Oerskovia sp. KBS0722: FFI11_012595
Help
Entry
FFI11_012595 CDS
T06124
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
oek
Oerskovia sp. KBS0722
Brite
KEGG Orthology (KO) [BR:
oek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oek03016
]
FFI11_012595
Enzymes [BR:
oek01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FFI11_012595
Transfer RNA biogenesis [BR:
oek03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FFI11_012595
Prokaryotic type
tRNA splicing ligases
FFI11_012595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDW63237
LinkDB
All DBs
Position
2801748..2802953
Genome browser
AA seq
401 aa
AA seq
DB search
MTTNTRASKNAATRLTKTLWSWASILDDGAREQAERTSTMPFVHPHLALMPDAHLGLGAT
VGSVIPTLRSIIPAAVGVDIGCGMVAVRTQYTAADVAGSALRDLRLAIEKAVPTSAGSYN
QRLTDTATARVTELEALADKAGFAPARYAGNWRLQLGSLGSGNHFIEVSLDEEDRVWFFL
HSGSRGVGNKIAQHHIAVARELMARYWIDLPDKDLAYLVEGTDEFWAYIRELRWAQHFAL
LNREEMMDRVVAAFDAWSGLAPVEEAERINCHHNFTEQEHHFSKDVWVSRKGAIRAREGD
PGLIPGSMGTASYVVVGKGHPLALDSAPHGAGREYSRSKARKTFTHDQLREAMAGIEYRD
TDAFIDEIPAAYKSIDRVMEDAADLVEVRHILRQIVNVKGD
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgaacacccgggcgtccaagaacgcggcgacccgcctgaccaagaccctgtgg
agctgggcctcgatcctcgacgacggtgcgcgcgagcaggccgagcgtacgtcgaccatg
ccgttcgtccacccgcacctggccctcatgcccgacgcgcacctgggcctcggcgccacc
gtcggctccgtgatccccacgctgcgctcgatcatccccgccgccgtcggcgtcgacatc
ggctgtggcatggtcgccgtccgcacccagtacacggccgccgacgtcgcggggtccgcg
ctgcgcgacctgcggctcgcgatcgagaaggccgtgccgacgagcgccggctcctacaac
cagcgcctgaccgacaccgcgacggcccgcgtcaccgagctcgaggcgctcgcggacaag
gccgggttcgcccccgcgcggtacgccgggaactggcgcctgcagctcgggtcgctgggg
tccgggaaccacttcatcgaggtcagcctcgacgaggaggaccgggtctggttcttcctg
cactccgggtcgcgcggggtcggcaacaagatcgcgcagcaccacatcgcggtcgcgcgc
gagctcatggcccggtactggatcgacctgccggacaaggacctcgcgtacctcgtcgaa
ggcacggacgagttctgggcgtacatccgcgagctgcggtgggcccagcacttcgcgctg
ctcaaccgcgaggagatgatggaccgtgtcgtggcggcgttcgacgcatggtcggggctc
gccccggtcgaggaggccgagcgcatcaactgccaccacaacttcaccgagcaggagcac
cacttctccaaggacgtgtgggtctcgcgcaagggcgcgatccgtgcccgtgagggcgac
ccggggctcatcccggggtccatgggcacggcgtcgtacgtcgtcgtgggcaagggccac
ccgctcgcgctcgactccgcaccgcacggtgcggggcgcgagtactcgcggagcaaggcg
cgaaagaccttcacgcacgaccagctccgtgaggccatggccgggatcgagtaccgcgac
accgacgcgttcatcgacgagatcccggcggcctacaagtcgatcgaccgggtcatggag
gacgcggcggacctcgtcgaggtgcgccatatcctgcggcagatcgtcaacgtcaagggc
gactga
DBGET
integrated database retrieval system
