Oerskovia sp. KBS0722: FFI11_013705
Help
Entry
FFI11_013705 CDS
T06124
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
oek
Oerskovia sp. KBS0722
Pathway
oek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FFI11_013705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oek03019
]
FFI11_013705
03009 Ribosome biogenesis [BR:
oek03009
]
FFI11_013705
Enzymes [BR:
oek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FFI11_013705
Messenger RNA biogenesis [BR:
oek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FFI11_013705
Ribosome biogenesis [BR:
oek03009
]
Prokaryotic type
rRNA helicases
FFI11_013705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
FKRP_N
Cas3-like_C_2
adh_short
Motif
Other DBs
NCBI-ProteinID:
QDW63425
LinkDB
All DBs
Position
3053773..3055695
Genome browser
AA seq
640 aa
AA seq
DB search
MSLDTSAPSHVLDQLEAAQTPAPAEQSGPTFADLGLPSNILKAVTDLGFTIPSAIQERAI
PALLSGRDITGVAQTGTGKTAAFGLPMLAAIDPNLGRVQGLVLAPTRELAMQVAEAIESF
AKHVPGIEVVAVYGGSPYQPQQRALQRGAQIVVGTPGRVMDHLERRSLVLDDIRYLVLDE
ADEMLRMGFAEDVEKIFGQAPKERQVALFSATMPAPIRRVAAQHLNDPVEIAVTRQSSTV
TSVRQTYSVVPFRHKTGALVRVLATSDADAAIVFTRTRGAAEEVGSALVERGISAATISG
DVAQKDREKIVERLRSGALDVLVATDVAARGLDVDRIGLVVNFDLPGEPEAYVHRIGRTG
RAGRTGEALSFVTPGERNRLKFIEKTIRASLEEVDVPSPADVSAHKARRILGQVAERQAA
GRLSMYRDLVAAHVAESGIDPIDLAAVLVALSVGDDGPKAREEQELFEAQRAEAKNARRE
RESRPYGDRDSRGPREGGRGGERGIRRDAVGTRYRLAVGHTHGAQPSGIVGALTNEGGLN
GKDLGKIDIFPSFSLVDIATPLDAAMIDRISRARVAGKSLRIQVDQGAPQGARGPRTGGS
APRSGGYSGGHSGHGPAGRYDERGERGGERKAPRFRAGER
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttgacacctctgcgccctcgcacgtcctcgaccagctcgaggccgcccagacg
ccggccccggccgagcagtcgggccccactttcgcggacctcggtctgccctcgaacatc
ctgaaggccgtgacggacctcggcttcacgatcccctccgcgatccaggagcgcgcgatc
cccgcgctgctctccgggcgcgacatcacgggcgtcgcccagaccggcacgggcaagacc
gctgcgttcgggctgccgatgctcgccgcgatcgacccgaacctgggtcgcgtccagggc
ctggtcctcgccccgacccgtgagctcgcgatgcaggtggccgaggccatcgagtcgttc
gccaagcacgtgccgggcatcgaggtcgtcgcggtctacggcggttccccctaccagccc
cagcagcgcgcgctgcagcgtggcgcccagatcgtcgtcggtacccccggccgcgtgatg
gaccacctggagcgtcgcagcctcgtgctcgacgacatccgctacctggtcctggacgag
gcggacgagatgctccgcatggggttcgccgaggacgtcgagaagatcttcggccaggcc
cccaaggagcgtcaggtcgcgctgttctccgcgacgatgccggccccgatccgtcgggtc
gccgcccagcacctgaacgacccggtcgagatcgcggtgacgcgccagtcctcgacggtc
acgtcggtgcgccagacgtactcggtcgtgccgttccgccacaagaccggtgccctggtc
cgcgttctcgcgacctcggacgccgacgcggcgatcgtgttcacccgtacccgtggcgca
gccgaggaggtcgggtcggctctcgtcgagcgcggcatctcggcggccacgatctcgggt
gacgtggcacagaaggaccgcgagaagatcgtcgagcgcctgcgctccggcgccctggac
gtcctggtcgcgaccgacgtcgcggctcgtggtctggacgtggaccgtatcggcctggtc
gtgaacttcgacctgccgggcgagccggaggcctacgtgcaccgcatcggtcgtacgggg
cgtgccggtcgcacgggcgaggccctgagcttcgtgaccccgggcgagcgcaaccgcctg
aagttcatcgagaagaccatccgtgcgagcctcgaagaggtcgacgtgccctcccccgcg
gacgtctccgcgcacaaggctcgccgcatcctcgggcaggtcgccgagcgtcaggccgcc
ggtcgtctgtcgatgtaccgcgacctggtcgcggcgcacgtcgcggagtcgggcatcgac
ccgatcgacctcgcggccgtgctggtcgccctgtcggtcggtgacgacggccccaaggcg
cgcgaggagcaggagctcttcgaggctcagcgtgccgaggcgaagaacgcgcgccgtgag
cgcgagtcccgcccctacggtgaccgcgactcgcgtggcccccgcgagggtggtcgtggc
ggtgagcgcggcattcgtcgtgacgccgtcgggacgcgctaccgtctcgccgtcgggcac
acgcacggcgcccagccgtcgggcattgtcggcgcgctgacgaacgagggcggcctcaac
ggcaaggacctgggcaagatcgacatcttcccgagcttctcgctggtcgacatcgccacg
ccgctcgacgccgccatgatcgaccgcatctcgcgtgcccgtgtcgcgggcaagtccctg
cggatccaggtggaccagggcgcgccccagggtgcccgtggccctcgtacgggtggttct
gcgcctcgttcgggcggctactccggtggccactcgggccacggaccggcaggccgctac
gacgagcgtggcgagcgcggcggcgagcgcaaggctccccggttccgcgccggcgagcgc
tga
DBGET
integrated database retrieval system
