Oerskovia sp. KBS0722: FFI11_015915
Help
Entry
FFI11_015915 CDS
T06124
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
oek
Oerskovia sp. KBS0722
Pathway
oek03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
oek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FFI11_015915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oek03400
]
FFI11_015915
Enzymes [BR:
oek01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FFI11_015915
DNA repair and recombination proteins [BR:
oek03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FFI11_015915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QDW63792
LinkDB
All DBs
Position
3538945..3541554
Genome browser
AA seq
869 aa
AA seq
DB search
MASSTAAQTVSVGGHRLKLTNLDKVLYPATGTTKGEVLAYLAAVADVLLPHASNRPATRK
RWPGGVEGPVFFQKNLDAGTPTWVRRRTIQHKDHANEYPLVNDLATLTWLGQVAALEIHV
PQWQFGRTGVQKNPDRLVLDLDPGEGAGLPECAEVARLARDVLRGMDLNPLPVTSGSKGI
HLYAALDGHQSTDEVSAVAHELARYLEAEHPDLVVSDMKKALRGGKVLVDWSQNNGNKTT
IAPYSLRGRSRPTVAAPRTWDELDDPDLAHLDKDQVMERVQSMGDPLAALTAGHLASLEP
TPERMATFARKGAAPSGGGSTDDGGPDSTPGDAPRRDRLETYRAKRDASRTPEPVPGSGE
PPDGSPEGNSFVIQEHHARRLHWDFRLEHDGVLVSWALPRGEPTDPQQNHLAVQTEDHPL
AYGSFEGTIPAGEYGGGEVTIWDAGTYELEKWRDDEEVIVTLHGEQHGTRRLALIHTGGH
GSSGKGEENNWLIHLMAPRDEGRAPQRATHHAAPRGRTSGQPTEPDDEPAGASLPRPMLA
TSGTVETLTAEGDPDDWAYEMKWDGFRVVAQVTGGAAAPGSTDAPTVRLVSRSGKDMTVT
YPELADLASRVRAEDLPVVVDGEIVALDARGRPSFRRLQHRANLTRAGDVAAARAKVGVE
LMLFDVLSVGGRSLVRRTYDERREILEGLVDGSGIVHVPPAFDGDLAGAVATSRQLALEG
VVAKRRTSTYTAGRRSRSWIKVKHSHTQEVVVVGWRPGHGDRSHLVGSLLLAVPDDEGLR
YVGRVGSGFTEKDRRDLVTRLGRIERVTNPALDVPAADASDARWVTPHLVGEVDYADWTS
APEGDGKLRHAVWRGWRPDKSPEDVRRER
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcgacggcggcgcagaccgtgagcgtcggcggtcaccgcctcaagctcacc
aacctggacaaggtcctgtacccggccacgggcacgacgaagggggaggtcctggcctac
ctcgcggcggtcgcggacgtcctgctcccccacgcctcgaaccgccctgccacgcgcaag
cgttggccgggcggcgtcgaggggcccgtgttcttccagaagaacctcgacgccggcacg
cccacctgggtcaggcgtcgcacgatccagcacaaggaccacgcgaacgagtacccgctc
gtcaacgacctcgcgaccctcacgtggctcgggcaggtcgccgccctggagatccacgtg
ccgcagtggcagttcggccggacaggcgtccagaagaaccccgaccggctcgtcctcgac
ctcgacccgggcgaaggcgcggggctgcccgagtgcgccgaggtcgcccgcctggcccgc
gacgtgctgcgcggcatggacctgaaccccctgcccgtgacgagcgggtccaagggcatc
cacctgtacgccgcgctcgacggtcaccagagcaccgacgaggtcagcgcggtcgcgcac
gagctcgcccgctacctcgaggccgagcaccccgacctcgtcgtgagcgacatgaagaag
gcgctgcgcggcggcaaggtgctcgtcgactggagccagaacaacggcaacaagaccacc
atcgcgccctactcgctgcggggccgctcccgtccgaccgtcgcggccccgcgcacgtgg
gacgagctcgacgaccccgacctcgcgcacctcgacaaggaccaggtcatggaacgcgtc
cagagcatgggcgacccgctcgcggccctcacggccggccacctggcctcgctcgaaccc
acgcccgagcgcatggcgacgttcgcgcgcaagggtgcggcgccgtcgggcggcgggagc
acggacgacggtgggcccgacagcacaccaggagacgcaccccgccgcgaccgcctcgag
acctaccgcgccaagcgcgacgcctcccggacccccgagccggtcccgggatcgggcgag
ccgcccgacgggtcaccagagggcaacagcttcgtgatccaggagcaccacgcgcgccgc
ctgcactgggacttccgcctggagcacgacggcgtcctcgtgagctgggccctgccgcgc
ggtgagccgaccgacccgcagcagaaccacctggcggtccagaccgaggaccacccgctc
gcgtacggctcgttcgaggggaccatcccggcgggcgagtacggcggcggcgaggtgacc
atctgggacgcaggcacgtacgagctcgagaagtggcgcgacgacgaggaggtcatcgtc
acgctgcacggcgagcagcacgggacacggcggctcgcgctcatccacacggggggccac
gggtcctccggcaagggagaggagaacaactggctcatccacctcatggccccgcgcgac
gaggggcgggcgccacagcgcgcgacgcatcacgccgcgccccgcggcaggacttccgga
cagcccaccgagcctgacgacgagcccgcaggcgcatccctgccccgcccgatgctcgcg
acctccgggacggtcgagacgctcacggcagagggcgaccccgacgactgggcctacgag
atgaagtgggacggcttccgggtggtcgcgcaggtcaccggcggcgctgcggcgcccggc
agcaccgacgccccgaccgtccgcctcgtgagccgcagcggcaaggacatgaccgtgacc
taccccgagctcgcggacctcgcgtcccgcgtccgcgccgaggacctgcccgtggtcgtg
gacggcgagatcgtggcgctcgacgcgcgcggtcgcccgagcttccggcggctccagcac
cgcgcgaacctcaccagggcgggggacgtcgcggcggcgcgcgccaaggtcggggtcgag
ctcatgctcttcgacgtcctgtctgtcggcggtcgctcgctcgtgcggcgcacctacgac
gagcgtcgcgagatcctcgagggcctggtcgacgggtcggggatcgtgcacgtgccgccc
gcgttcgacggcgacctcgcgggggcggtcgcgacgagcaggcagctcgccctcgagggc
gtggtggccaagcgccgcacgagcacgtacacggccgggcggcgctcgcggagctggatc
aaggtcaagcactcgcacacccaggaggtcgtggtggtcggctggcgcccggggcacggg
gacaggtcgcacctggtcggctcgttgctgctcgcggtgcccgacgacgagggcctgcgc
tacgtgggccgcgtcgggtcgggcttcacggagaaggaccggcgggacctcgtgacacgg
ctcggtcggatcgagcgggtcacgaacccggccctcgacgtcccggccgcggacgcctcg
gacgcccgctgggtcacgccacacctggtcggcgaggtcgactacgcggactggacgagc
gccccggagggcgacggcaagctgcggcacgcggtgtggcggggctggcggcccgacaag
tctcccgaggacgtgcgccgggagcgctga
DBGET
integrated database retrieval system
