Oerskovia sp. KBS0722: FFI11_017690
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Entry
FFI11_017690 CDS
T06124
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
oek
Oerskovia sp. KBS0722
Pathway
oek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FFI11_017690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oek03021
]
FFI11_017690
03019 Messenger RNA biogenesis [BR:
oek03019
]
FFI11_017690
Transcription machinery [BR:
oek03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FFI11_017690
Messenger RNA biogenesis [BR:
oek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FFI11_017690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
VAD1-2
Spore_III_AA
NACHT
ResIII
Motif
Other DBs
NCBI-ProteinID:
QDW64093
LinkDB
All DBs
Position
complement(3958586..3960658)
Genome browser
AA seq
690 aa
AA seq
DB search
MTDTTDTARAGALSTLRLPELQALASQLGVKGTSKMRKSDLVDVIRSTSGEKSAPERTAG
ASAAARRAPEKDTQTEKVVVQPAVEVPVRTATENVDRAERPRRERGQRSARADQAADIVA
PLLEQGSRAARVDADRAAGGETPDERAARAAAAVGLVTGTAPERGSRRAGRGAGAPRGGE
GETARESAPDAAGAGGGRQERQREQREQQGQGERQNGQQGQGNQQGGQRQQGQGNQQGGQ
RDQQGQGNRQADEYDERGGRRRRGRDRNRDRDRKRGRTRGGNIDVVGLDEIEVSEDDVLL
PVAGILDVLDQYAFVRTSGYLPGPNDVYVSLGQVKKSGLRRGDAIVGAVRQPRDGESFQQ
TGPRNQKFNALVRLDSVNGMSPEAARNRAEFNKLTPLYPQERLRLETGEVGRLTPRVIDI
VAPIGKGQRGLIVAPPKAGKTIIMQQIANAITTNNPEVHLMVVLVDERPEEVTDMERTVK
GEVIASTFDRPASDHTIVAELAIERAKRLVELGQDVVVLLDSLTRLSRAYNLAAPASGRI
LSGGVDASALYPPKRFFGAARNIENGGSLTILASALVETGSKMDEVIFEEFKGTGNMELR
LSRSLADKRIFPAVDVNASGTRREEILMPQDELRIVYKLRRVMGALDQQQAIELLLGKLK
ETKSNVEFLLQVQKTTPGGINNDEEVGRAV
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
gtgacagacaccaccgacaccgcccgtgcaggcgcactctcgacgctgcgcctccccgag
ctgcaggcactcgcctcgcagctcggtgtgaagggcacgtccaagatgcgcaagagcgat
cttgtcgacgtcatccgttccacctccggcgagaagagcgctcccgagcgcaccgccggg
gcgtccgccgccgcgcgtcgcgcgccggagaaggacacccagaccgagaaggtcgtcgtg
cagccggccgtcgaggtccccgtgcgcacggcgaccgagaacgtcgaccgcgccgagcgc
ccccgccgcgagcggggccagcgttccgcacgcgccgaccaggccgccgacatcgtcgcc
ccgctcctggagcagggcagccgcgccgcccgcgtcgacgccgaccgtgccgccggggga
gagaccccggacgagcgcgccgctcgtgcagccgccgccgtcggcctggtgaccggcacg
gcccccgagcgtggttcgcgccgcgccggacggggcgccggtgccccgcgcggcggcgag
ggcgagaccgctcgtgagtcggctcccgatgccgccggagcgggcggcggacgccaggag
cgtcagcgcgagcagcgcgagcagcagggccagggcgagcgccagaacggccagcagggc
cagggcaaccagcagggcggccagcgccagcagggccagggcaaccagcagggcggccag
cgcgaccagcagggtcagggcaaccgtcaggcggacgagtacgacgagcgcggcggacgc
cgccgtcgtgggcgcgaccgcaaccgcgaccgggaccgcaagcgcggccgcacccgcggc
gggaacatcgacgtcgtgggcctcgacgagatcgaggtgtccgaggacgacgtgctgctg
cccgtggccggcatcctcgacgtgctcgaccagtacgcgttcgtgcggaccagcggctac
ctgcccggcccgaacgacgtctacgtctcgctcggccaggtcaagaagtcgggcctgcgt
cgcggtgacgcgatcgtcggcgcggtgcgtcagccccgcgacggggagtcgttccagcag
accggaccgcgcaaccagaagttcaacgcgctggtccggctcgactcggtcaacggcatg
tctcccgaggcggcccgcaaccgtgccgagttcaacaagctgaccccgctctacccgcag
gagcgtctgcgcctggagacgggcgaggtcggtcgtctcacgccgcgcgtgatcgacatc
gtcgccccgatcggcaagggccagcgtggtctgatcgtcgctccgcccaaggcgggcaag
acgatcatcatgcagcagatcgcgaacgcgatcacgacgaacaaccctgaggtccacctc
atggtcgtgctcgtggacgagcgacctgaagaggtcacggacatggagcgcaccgtcaag
ggcgaggtcatcgcctcgacgttcgaccgtccggcctccgaccacacgatcgtcgccgag
ctcgcgatcgagcgcgccaagcgtctcgtggagctgggccaggacgtcgtcgtgctgctc
gactcgctcacgcgactgtcgcgtgcgtacaacctcgcggccccggcgtccgggcgcatc
ctgtccggtggtgtcgacgcctcggcgctctacccgcccaagcgcttcttcggcgcggcg
cgcaacatcgagaacggcgggtcgctcacgatcctcgcctcggcgctcgtcgagaccggc
tccaagatggacgaggtcatcttcgaggagttcaagggcaccgggaacatggagctccgg
ctctcccgctcgctcgcggacaagcgcatcttcccggccgtggacgtcaacgcgtccggt
acgcgccgcgaggagatcctcatgccgcaggacgagctccgcatcgtctacaagctgcgc
cgcgtgatgggtgcgctcgaccagcagcaggccatcgagctgctgctcggcaagctcaag
gagacgaagtccaacgtcgagttcctgctccaggtgcagaagaccacacctggcggcatc
aacaacgacgaagaggtcggccgcgccgtctga
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