Oenococcus sp. UCMA 16435: DSM07_00310
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Entry
DSM07_00310 CDS
T05781
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
oen
Oenococcus sp. UCMA 16435
Pathway
oen03410
Base excision repair
oen03430
Mismatch repair
oen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DSM07_00310 (recJ)
03430 Mismatch repair
DSM07_00310 (recJ)
03440 Homologous recombination
DSM07_00310 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oen03400
]
DSM07_00310 (recJ)
DNA repair and recombination proteins [BR:
oen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DSM07_00310 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DSM07_00310 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DSM07_00310 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
ssDNA-exonuc_C
Motif
Other DBs
NCBI-ProteinID:
AZZ59882
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Position
60253..62121
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AA seq
622 aa
AA seq
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MLDNQFSWFKRSTDEQFIQKIEQHFSLGRLVSTVLAGRFSSIPTIEDFFSLDLNKLNDPS
RLYQIDLLKKRLIKAIDQQEKITIYGDYDADGITSTSILLRTLQILGAQVDYFIPNRFRD
GYGPNKLVYQHLINAGTKLIFAVDNGISGFDAVDLANQNQVDVLIADHHQLPEKLPDAKV
IIHSDLSTDYPFKNLSAAGIAFKIARYLLGTQKARQFLPLVAIGEIADVMPLINENRILI
QTGIDLIKSGENKGLQEVIKRADLKLESLTAQDIAFKIAPRLNSLGRMADGGIGVELLTS
DDPDEISKIAKQVEHLNKQRQKEADKTYRSASMQVSPQQKDIIIVSGENWHEGIIGIVAG
RLSAHFGRPAVVFSIKEGIAKGSARSIGDFDLYAVLNRARDLYISFGGHKQAAGLSLKAA
DLKRLNKILNADDYQFSVGKLAIDAMAKAKNLSIDSFKQLSKLAPFGEGNPEPVFDLDDV
ELSNLRILGSDKKHFKLKVKGFSGDILFFNRPDLIGKLQLGEKLSIVGTLSLNEWNHRQS
LQIIGKDLRSKDQVPDRNSFSRTYHYYCSENVLYSPNDFFQKVFLELGFVRIVNGVVFVV
PEAKHAELSQSYTYRKRAENGY
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgttggataaccaattttcttggtttaagagaagtacagatgaacaattcatccagaaa
atcgagcagcatttttcacttggcaggctggttagcacggttcttgcgggacgtttttct
tcgattccaacaattgaagacttttttagtttagatctaaataaactgaatgatccgagt
cgcttatatcagatagatcttttaaaaaaacgattaatcaaagcaattgatcagcaggaa
aaaatcacaatttatggcgattacgatgctgacggcatcacaagtacttcgattttatta
aggactttgcaaatacttggggctcaggtcgactattttattccgaatcgttttcgcgat
ggctatggaccgaataaacttgtttatcaacatttaatcaatgcaggtacaaaattgatt
tttgcagttgataatggtatttccggttttgatgcggttgatttggcaaatcaaaatcaa
gttgatgtcctaatcgctgatcatcatcaacttccggaaaaattgccagatgccaaagta
attattcattccgatctatcgacggattatcctttcaaaaatttatcagctgcgggaatt
gcgtttaaaattgctagatatttattagggactcaaaaagcccgacaattcctgccattg
gttgcgattggcgaaattgccgatgtaatgcctttgattaatgaaaatagaatcctgatt
caaaccggcattgatttaataaagagcggtgaaaataaaggtctccaagaggtaatcaaa
agagctgatttaaagctcgagagtcttactgcccaggatatagcatttaaaatcgctccg
cgtctgaattctttgggaaggatggcagatggtggaatcggtgtcgaattgcttactagt
gatgatcctgatgaaatatccaaaattgccaaacaggttgaacatttaaataagcagcgg
caaaaagaagctgataaaacttatcgatctgcgtcaatgcaggtttcgcctcagcaaaag
gacattattattgtttctggcgaaaattggcatgaaggaattatcggtatcgttgctggt
cgtttgtctgcacactttggtcgccctgcggttgttttttcgattaaagaaggaatcgcc
aagggatctgctcgcagtatcggagatttcgacctctatgcggttctgaatcgagctcgt
gatctttacatttcttttggtgggcataaacaagcggctggtttaagcttaaaggctgct
gacttaaaacgattgaataaaattctgaatgctgatgattatcaattttcggttggcaaa
cttgcgattgacgcgatggcaaaagcaaagaacttatcaattgattcctttaaacaatta
tcgaaacttgctccttttggcgaaggaaatccggaaccggtttttgacttggacgatgtt
gaattaagcaatttacgaattttaggatcggataagaaacattttaaattaaaagtaaaa
ggattttcgggtgatattttgtttttcaatcgacctgatttaattggaaaacttcaatta
ggtgaaaaactatcgattgttggaacactttctttaaatgaatggaatcatagacagtct
ttacaaattattggtaaagaccttagaagtaaggaccaagttcccgaccgaaactctttt
tcccgaacttatcactattattgttcggaaaatgttttatactctccaaatgatttcttc
caaaaagtttttttggaattaggatttgttagaattgtaaatggcgttgtttttgtcgtt
cctgaagcaaagcatgctgaattatctcaatcatatacatatcgaaagcgagctgaaaat
ggatattga
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