Oenococcus sp. UCMA 16435: DSM07_02665
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Entry
DSM07_02665 CDS
T05781
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
oen
Oenococcus sp. UCMA 16435
Pathway
oen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DSM07_02665 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oen03021
]
DSM07_02665 (rpoC)
03400 DNA repair and recombination proteins [BR:
oen03400
]
DSM07_02665 (rpoC)
Enzymes [BR:
oen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DSM07_02665 (rpoC)
Transcription machinery [BR:
oen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DSM07_02665 (rpoC)
DNA repair and recombination proteins [BR:
oen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DSM07_02665 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AZZ60291
LinkDB
All DBs
Position
complement(517550..521251)
Genome browser
AA seq
1233 aa
AA seq
DB search
MAIDVNKFESMQIGLASPAKIREWSYGEVKKPETINYRTLKAERDGLFDERIFGPIKDYE
CACGKYKRIRYKGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLILD
MSPRSLEEIIYFASYVVINPGNTPLEKKQLVTEAEYRQYQDQYGTDTFDAKMGAEAIKEL
LAEVDLEKQAKELKNELKDATGQKRTRAVRRLDIVEAFIQSGNKPEWMVMDVIPVIPPDL
RPMVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDN
GRRGRPVSGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPFLKMNQMGLP
RQMAVELFKPFIYNRLIELGTENGGANNLRSARRLVERHEDVVQDVLEEVVKEHPVLLNR
APTLHRLGIQAFEPVLVSGKAMRLHPLVTTAYNADFDGDQMAIHVPLSDEAQAEARLLML
AASHILAPKDGKPIVAPSQDMTIGNYYLTTEEAGIKGEGMIFSSADEVKMALQNHEVELH
TRIGIAASSFDKAKPFTDHQRARIMVTTVGKVIFNEILPDDFPYINEPKPENFNGIDDRF
FLDPGTDIIEWFKNESLNGPFKSGFLSDIIAQIYARYQVTRTSVLLDDMKDLGYDISTRS
GLTVAMSDVTELPEKAAVLKEAHEKVAKITKQFRRGLLTDDERYIQVTQTWSDAQDKIKS
MLIASFDSKNPIFMMSDSGARGNISNFVQLAGMRGLMAAPNGKVIELPVTANFREGLSVL
EMFISTHGARKGMTDTALKTANSGYLTRRLVDVAQEVIVREEDCGTDRGLDVSAIMDGNE
VIEPLYDRILGRYAMKPVIDPKTGEVIAKQNEMIDEHVAGQIIDAGIQTVTIRSIFTCRT
EHGVCVKCYGRNMATGDIVEVGEAVGTVAAQSIGEPGTQLTMRTFHTGGVALSEDITQGL
PRVQEIFEARNPKGRAEISEVTGKVTSIEENPADRTKTVTIEGETDTREYILPISARLRV
AEGDEIHRSEAINEGPLDPKELIKVSSALKTENYMLAEVQKVYRMQGVGIADKHVEVMVR
QMLRKVRVMDPGQTDLLPGELLDIADFRRANTKAILSGQMAATSRPVLLGITKASLETNS
FLSAASFQETTRVLTDAAIRGKNDPLVGLKENVIIGKVIPAGTGVAEYRHIKDEVVAAPV
EPLEKIPTLDELQKTFDKEPASSTVNKAGNNTK
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
ttggcaatagacgttaacaaatttgaatctatgcaaattggtttagcatcgccagctaag
atccgtgagtggtcttatggtgaagttaaaaaaccagaaacgatcaactatcgtacttta
aaagctgagcgtgatggtctctttgacgaacgaatttttggaccgattaaagattacgaa
tgtgcttgtggaaaatataagcggattcgttataagggaattgtttgtgaccgttgtggc
gttgaagttacttcttcgaaggttcgtcgtgaaagaatgggccatatcgaattagccgct
cctgttacacacatttggtactttaaaggaattccaagtcggatgggcttgattttggat
atgagccctcgttctcttgaagaaattatttattttgccagctacgttgtaataaatcct
ggtaatacaccgcttgaaaaaaagcaattagtcaccgaggccgaatatcgtcaatatcaa
gatcagtatggtactgatacttttgatgcgaagatgggcgccgaggctatcaaggaatta
ttagctgaagttgatcttgaaaaacaagctaaggaattaaaaaatgaattaaaggatgca
accggacaaaaacggactcgtgctgttcgtcgcttggacattgtcgaagcctttatccaa
tctggcaacaaaccagagtggatggttatggatgttattccggtcattcctcccgatttg
cgtccaatggtccaattggaaggtggccgttttgctacttccgatttaaacgacctgtat
cgtcgggttatcaatcgtaataaccgtcttaagcgtttattggacttaaatgctcctgga
atcattgttcaaaacgaaaaacgtatgcttcaggaagctgttgatgctttgattgataat
ggacgtcgtggacgtccggtttctggacctggtaatcgtcctttgaagtcgctttcccac
ttactaaaaggtaagcaaggacgtttccgtcaaaacttgttaggaaaacgtgttgattat
tccggtcgttcggttatcgatgttgggcctttcttgaaaatgaaccaaatgggtcttcct
cgccaaatggctgtcgaattgtttaagcctttcatttataatcgcttaattgaattggga
acagaaaatggtggcgcaaataatcttcgttccgctcgtcgcttggttgaacgtcatgaa
gatgttgttcaggatgtcttagaagaagttgttaaagaacatccggttttgcttaatcgt
gcaccgactttacatcgtcttggcatccaggcttttgaacctgttcttgtatctggtaaa
gcgatgcgtttgcacccattggttacgacggcttataatgctgatttcgatggtgaccaa
atggcaattcatgttcctttgtccgatgaagctcaagctgaagcacgtttgttgatgctg
gctgcttctcatatcctggcacctaaggatggaaaaccaattgttgctccttcacaggat
atgacaattggaaactattatttaaccactgaagaagccggcatcaaaggcgaggggatg
atcttctcttctgctgatgaagtcaaaatggctttacagaatcacgaagtggaattgcac
actcgcattggtattgcagcttctagttttgataaagcaaagccgtttactgatcaccag
cgcgcaagaattatggtaacaacggttggtaaagttattttcaatgaaattttgccagat
gatttcccgtatattaatgaaccaaaaccggaaaactttaacggcatcgacgatcgattc
ttcctcgatcctggtacggatattatcgaatggtttaaaaacgaatcattgaacggacca
tttaagtctggattcttatcagatatcattgctcaaatttatgcccgttaccaagtaact
cggacttctgttttgcttgatgatatgaaagatcttggatatgatatttcaactcgttct
ggcttgaccgttgccatgtcggacgttacagaacttcctgaaaaggccgcagtgcttaag
gaagcccatgaaaaagttgctaaaatcactaaacaattccgtcgtggtttgttgactgat
gacgagcgttatattcaagttactcagacctggtcggacgctcaagacaagatcaaatca
atgctgattgcctcctttgattcaaagaatccaatctttatgatgagtgattctggtgcc
cgtggaaacatttccaacttcgttcaattggctggtatgcgtggcttaatggccgctcct
aacggtaaggttattgaacttcctgttactgccaatttccgtgagggcctttctgttttg
gaaatgtttatttctactcatggtgcacgtaaaggaatgaccgatacggctttgaaaacg
gctaactctggatatctgacccgtcgtttggttgacgttgctcaagaagttatcgttcgt
gaagaagattgtggtacggatcgtggccttgatgtttcggcaattatggatggtaatgaa
gttattgaaccactttatgatcgtatcttaggccgatatgcaatgaaaccggttattgat
ccaaaaaccggcgaagtgattgccaaacaaaatgaaatgattgacgaacatgtcgctggc
caaatcattgatgccggcattcaaacagttacaatccgatcgatctttacttgccgtacc
gaacatggtgtttgtgttaaatgctatggccgcaatatggcaactggtgacattgttgaa
gttggtgaggctgtcggtacagttgccgctcagtccattggagaacctggtactcaattg
acgatgcgtactttccataccggtggtgttgctttgtctgaagatattacccaaggtctt
cctcgtgttcaggaaattttcgaggcccgtaatcctaaaggccgtgcggagatttccgaa
gtaactggtaaggttacaagtatcgaggagaatccggccgatcgtactaaaacagttacg
attgagggagaaaccgatacacgtgaatatattctaccgatttctgctcgtttgcgagtt
gccgaaggtgatgaaattcatcgttcggaagccatcaatgaaggtcctttggatcctaag
gaacttataaaagtttctagtgctttaaagactgagaattacatgctggccgaagttcaa
aaagtttaccgtatgcaaggtgttggcattgccgataagcatgttgaggttatggttcgt
caaatgctccgcaaggttcgtgtgatggatcctggccaaacagacttgcttcctggtgaa
ttgttggatattgctgacttccgtcgtgcaaataccaaagcaattctttcaggccaaatg
gctgccacgtcgcgtccggttctgcttggtattacaaaagcttctctagagactaattca
ttcttgtctgccgcatcattccaagagactacccgtgtcttaacggatgctgctattcgt
ggcaaaaatgatcctctggttggtttaaaggaaaatgtcattatcggtaaggttattcct
gccggaaccggtgtggccgaatatcgtcatattaaagacgaagtcgttgctgctccagtt
gaaccattggaaaaaatccctacattggatgaattgcaaaagacatttgataaagaacct
gcttcttcgactgtgaataaagcaggtaataacactaagtaa
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