Oenococcus sp. UCMA 16435: DSM07_04150
Help
Entry
DSM07_04150 CDS
T05781
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
oen
Oenococcus sp. UCMA 16435
Pathway
oen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSM07_04150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oen03019
]
DSM07_04150
03009 Ribosome biogenesis [BR:
oen03009
]
DSM07_04150
Enzymes [BR:
oen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DSM07_04150
Messenger RNA biogenesis [BR:
oen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSM07_04150
Ribosome biogenesis [BR:
oen03009
]
Prokaryotic type
rRNA helicases
DSM07_04150
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
AZZ60563
LinkDB
All DBs
Position
complement(830924..832480)
Genome browser
AA seq
518 aa
AA seq
DB search
MKFEEFGLSPELLSAVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPIL
EEVDPKNPQIQALVISPTRELAMQTEEELNKLGSDKHVKTQVVFGGYDIRRQIHALKEHP
QILVGTPGRLIDHLNRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQTLLF
SATMPEDIKKIGVKFMEDPEEVHIASKGLTIDLVDQYLVNTREYEKFDAMTRLFDVQQPE
LAIVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLIATDVAA
RGLDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEIDYLRAIEKLINK
RMAALKPPSAEEAHVARLKNAKAETYAVLGKTTVDNVEDEATEIASQYDAKLLAAALLHA
LSKDDERTRPVDIAQEKPLPRRHSSSDHSHNFRSGRSNGNRGRSNGNRGGRRGGFKEEFV
IDRGHKPADRRNQRIQARPKGVAKAAPKKREFKIVKKS
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttgaagaatttggacttagtccagaacttttgtctgcggtcaaaaagcatggt
tatgatgaagcaaccccaattcaggaaaaaacaattccgttgattatacagggtgttgat
gttattggccaagcacagactggtacaggcaagacggcagcttttggcttgccgatttta
gaagaagtggatccaaagaatccacagatccaagctttggttatcagtccgacacgcgag
ctagccatgcagaccgaagaagaacttaacaaacttggttctgacaaacatgtaaaaact
caggttgtttttggtggatatgatattcgccgacagatccatgcactaaaagagcatccg
caaatccttgttggtactcctggtcgattgattgatcatttaaatcgtcatacgatcgat
tttcgtggcgttaaaaccttggtgattgacgaagccgatgaaatgttgaacatgggcttt
ttggaagatatcgagacaattgttcattacacaccggatgatcgtcaaactttgcttttt
tctgcaacgatgcctgaagatattaagaaaattggcgttaaatttatggaagatccagaa
gaagttcatattgcttctaaaggattaacgattgatttggttgatcaatatctggttaat
actcgcgaatatgaaaagtttgatgcaatgacacgtttgtttgatgtacaacagcccgaa
ctggcaattgtctttggtcggacaaaacgtcgtgttgacgagttgaccaaggctttgcag
ctccgtggctataaagccgctggaattcatggcgatttggaccaagcagcccgcatgcgg
actttgcgttcctttaaaaaaggagaattgcagttcttaattgcaactgatgttgcagct
cgtggtcttgatatttccggagttacacatgtttataactacgatgttccgcaagatcct
gaatcttatgttcatcggatcggccgtaccggccgtgccggacaccatggcgtttctgtg
acttttgttgttcgtggtgaaatcgattatcttcgtgcaattgaaaaattgattaataag
cggatggctgctttgaaaccaccttcggctgaagaagcacatgttgctcgtctgaaaaat
gctaaagcagagacttatgccgtcttgggcaaaacgactgttgataacgttgaagatgaa
gcaactgaaattgccagtcaatacgatgctaaattattagcagctgcactattgcatgct
ttgtctaaagacgatgaaagaactcgacctgttgatatcgcacaggaaaagcctcttcca
cgccgccatagttcatcagatcacagtcacaatttccgtagtggacgctctaatggtaat
cgtggccgcagcaatggtaatcgtggcggtcgtcgtggcggttttaaagaagaattcgta
attgatcgtggccataaaccggcagatcgtcgtaatcaacggattcaagcgcgtccaaag
ggtgttgcaaaagcagctccaaaaaagcgtgagtttaaaattgtcaaaaagtcatga
DBGET
integrated database retrieval system
