Oenococcus sp. UCMA 16435: DSM07_04305
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Entry
DSM07_04305 CDS
T05781
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
oen
Oenococcus sp. UCMA 16435
Brite
KEGG Orthology (KO) [BR:
oen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oen03009
]
DSM07_04305 (rlmD)
Enzymes [BR:
oen01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
DSM07_04305 (rlmD)
Ribosome biogenesis [BR:
oen03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
DSM07_04305 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Cons_hypoth95
MTS
Methyltransf_15
TRAM
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_4
Methyltransf_25
PrmA
Methyltransf_16
Post_transc_reg
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
AZZ60593
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Position
complement(862960..864336)
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AA seq
458 aa
AA seq
DB search
MSRRTYSKLIKNQELTGDVVDLTYEGLGVIKVDDFPVFIVNSLPGERIKFAITRVLNSYA
FGRVVEIIKESPDRVRADHSEMIASGIAPLVNLAYPAQLEFKRKQIKQLFHKVGIDDLEI
LPTLGMKNPTHYRNKTVVPVKFQDGKLVTGFYRRGSHKLVPIDDYYLNDPKIDIVVGIVR
DVLNDFHISAYNEITREGIVRYLMVRRGYHSGQTMLAIVATKKTLPYEKEIIKKINQRIP
DLTSFLLNYNPKQTNVQLGLNNRVLSGQQVIHDTLLGLDFEIGVNSFYQVNPQTTAVLYT
KAAELAELKGNELVIDAYSGIGTIGLSIAKKVKKVIGVEVVVPAVEDAKKNMSANRIKNA
EYIAADAPQQFIKWANNGIKPDVVFVDPPRKGLTVDLIRALGMMAPLKFVYISCNPATLA
RDAVLIKEQGYRISKAVLPIDQFPQTMHVESITVFEKE
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagaagaacttattcaaaattaataaaaaatcaggaattaaccggagatgtagtt
gatttgacttacgagggattgggcgttatcaaagtcgatgactttccggtttttattgtt
aactcacttcctggcgaacgaattaaatttgcaatcactcgagttttaaactcttacgct
tttggacgagtagttgaaattattaaagaatccccagatcgtgttcgagctgatcattcg
gaaatgattgctagtggaattgctccactggtgaatttggcttatccagctcaattggaa
tttaaacgtaaacaaatcaaacagttattccataaagttggtattgatgatctcgaaatt
ttgccaactctggggatgaaaaatccaactcattatcgaaacaaaacggttgtcccggta
aaatttcaggatggtaaattggtgactggtttttatcgtcgtggttcccacaaattggtt
ccgattgatgattattatttgaatgatccgaaaattgatattgttgttggaattgtccgg
gatgttttgaatgattttcacatttctgcctataacgaaattactcgagaaggtattgtt
cgttatttaatggttcgtcgtggttatcatagtgggcagacaatgctcgcaattgtagca
acgaaaaaaactttaccgtatgaaaaagaaattattaaaaaaattaatcaaaggattccg
gatttaaccagttttttattgaattacaatcccaaacagacgaatgttcaattaggactg
aataaccgtgttttatctggtcaacaggtcattcacgatactttgctgggacttgatttt
gaaattggcgttaactctttttatcaagtcaacccacagacaactgccgtgttgtatacc
aaagcggctgaattggccgaattaaagggcaatgaactggtgattgatgcttattctgga
attggtacaatcggtctttcgattgctaaaaaagttaaaaaagttattggtgtcgaggtt
gttgttccggctgttgaagatgcaaaaaagaatatgtcggctaatcggattaaaaatgcc
gaatatattgctgccgatgcaccgcaacagtttattaaatgggccaataatggcattaaa
ccggatgtggtttttgttgatccaccaaggaaaggattgaccgttgatttaattcgagca
cttggtatgatggcaccattgaaatttgtttatatttcttgcaatccggccacacttgcc
cgtgatgctgttttaattaaagaacagggatatcgcatttccaaagcagttttgccgatt
gatcaatttccacagacaatgcatgttgaatcgattacggtttttgaaaaagagtaa
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