Osmerus eperlanus (European smelt): 134006987
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Entry
134006987 CDS
T10927
Symbol
vps50
Name
(RefSeq) LOW QUALITY PROTEIN: syndetin
KO
K23288
syndetin
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oep04131
]
134006987 (vps50)
Membrane trafficking [BR:
oep04131
]
Protein recycling
Others
EARP complex
134006987 (vps50)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndetin_C
Vps54_N
Motif
Other DBs
NCBI-GeneID:
134006987
NCBI-ProteinID:
XP_062302084
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All DBs
Position
20:12980840..13036648
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AA seq
908 aa
AA seq
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MPVLQKRPLSSDKSDDPDTATSNPAATEPVFVFGMFYDSPDQEGRSSHGRSRKRSFVSTR
RAGEVTSLQTNLQLAAVICTNARRQLSSAKEGFTEASXGLLANQRRRQLLTGLLKSLRTI
KTLQRTDVRLSEMLEEEDYPGAIHLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQL
DVALSKTCKNFDVAHYTKVQLAYTLLGKTQTAMDQLHMHFTQAIHNMVFQVVLGYVELCA
GNADTKFQKMQYKDLCTHITSDSYLPCLSDLCKALWEVMLSYHRTMCWHGEHDLEEPPAA
DEAPSRAAVCDEAVDHSYVKKKLEHGLTRIWQDVQLKVKAYILGTDMSNFKYDDFIVVLD
VISRLMQVGEEFCGSKSEVLQESIKRQSVNYFKNYHRTRLEELRMFLENETWELCPVKSN
FSMAQLHEFRFMGQGRSPSVSPSRQALCVGGPGQEKPSLFQQFSQEGNPFERLIHNQEDD
TEDVLASNGYESDELDKNIYQEYDSDSDVADELKQDYVDEQTGDVPLKSASRDTARSRKK
SDYNLNKSSAPILTNTTLNVIRLVGKYIQMMNILKPISFDVIHCVSQLFDYYLYAVYTFF
GRNDMYESSGLGLISSRLRTTLNRIQESLIDLEVVGESVVVSSEDRKEKVPSPHLSQVVD
LSNCRTLHGLAQRVVATESLVFLAEQFDFLQTHLDSMMPPAKKPFLQQFYSQTVSTASEL
RKPIYWIVAAKAIDYEQMLLLMSGVKWDIREIMSQHNVYVDVLLKEFEEFNRRLGEASRQ
VRIPLAVSNVLWEHCIRLANRTLVEGYANVKKCSNEGRALMQLDFQQFLTKLEKLSDLRP
VPDKEFVETYIKAYYLTENDMEQFIKNHREYSMKQLANLVNVCLGSHINKKARQKLLAAI
DDIDRPRR
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgccagtcttacagaagcgccctctttcctcggataaatccgatgatccagacaccgcc
acatcaaacccggccgcaacagagccggtgtttgtgtttggcatgttctacgactcccca
gatcaggaggggagatcctctcacggccgcagcagaaagagatcatttgtgagcactcgc
cgagctggagaggtgacatctctgcagacgaacctgcagctggcagcagtgatctgcacc
aacgccaggaggcagctgagctctgccaaggagggcttcactgaggccagtnctgggctg
ctggccaatcagaggagacgacagctactgactggcctgctcaagtccctcaggaccatc
aagactctgcaaaggacagacgtaagactcagcgagatgctggaggaggaggactatcct
ggagccatccacctgtgtctggagtgccagaaggctgccagcaccttcaaacactacagc
tgcatcagtgagttgaactccaaactccaagacaccctggagcaaatcgaggaacagctg
gacgtggctctgtcgaagacctgcaagaacttcgatgtggctcactacaccaaggtccag
ctggcatacacactcctgggcaagactcagactgccatggaccagctgcacatgcacttc
acccaggccatccacaacatggtgttccaggtggtgctggggtacgtggagctctgcgct
ggcaacgctgacaccaagttccagaagatgcagtacaaggacctgtgtacgcacatcact
tcagacagctacctgccgtgcctgagtgacttgtgcaaggcattgtgggaggtgatgctg
agctaccacaggacgatgtgctggcacggggagcacgacctggaggagccccctgctgca
gatgaggcgcccagcagggcggcggtgtgtgatgaggcggtggaccacagctacgtgaag
aagaaactggagcacggactgacccgtatctggcaggacgttcagctgaaggtgaaggcc
tacatcctgggcaccgacatgtccaacttcaaatatgacgacttcattgtggtgctggac
gtcatcagcaggctgatgcaggtgggagaggagttctgtggcagcaagtcagaggtgctc
caggagtccatcaaacgccagagtgtcaactacttcaagaactaccacaggacccgtctg
gaggagttgaggatgtttctggaaaacgagacgtgggaactttgtcccgtcaagtccaac
ttcagcatggctcagctacatgagttcaggttcatgggccagggcagatctccgtccgtg
tcccccagcaggcaggctctgtgtgtgggtgggccaggccaggagaagccctccctgttc
cagcagttcagccaggaggggaaccccttcgagaggctcatccacaaccaggaggacgac
accgaggatgtgctggcctccaacgggtacgagtcagacgagctggacaagaacatctac
caggagtacgacagcgacagcgatgtggccgacgaactcaagcaggactacgtggatgaa
cagaccggagacgttcccctcaagagtgcctccagggacactgcgaggagcaggaagaag
tcagactacaacctgaacaagagctccgcccccatcctgaccaacaccaccctcaatgtg
atccgtctggtcgggaagtacatccagatgatgaacatcctgaagcccatctccttcgat
gtgatccactgtgtctcccagctgttcgactactacctgtatgcagtctacaccttcttc
ggacgcaacgacatgtatgagtcatcaggcctgggcctgatcagcagcagactgaggacc
accctgaacagaatccaggagagcctcatcgatctggaggtggttggggagagcgtggtg
gtttcgtccgaggacaggaaggagaaggtgcccagtcctcacctcagccaggtggtggac
ctgtccaactgcaggaccctccacggcctggctcagcgcgtggtggccacagagtcactg
gtgttcctggcagagcagtttgacttcttgcagacccacctggactccatgatgcctcca
gctaagaaacccttcctgcagcagttctactctcagactgtgtccacagccagtgagctg
aggaagcccatatactggatcgtagcagccaaggccatcgactatgagcaaatgctgctg
ctgatgtctggagtcaagtgggacatcagagagatcatgtcccagcacaacgtctacgtg
gacgtgctgctgaaggagttcgaggagtttaaccggcgtcttggcgaggcgtccagacag
gttcgaatcccgctggcagtgtccaacgtgctgtgggagcactgcatccgcctggccaac
cgcaccctggtggagggctatgctaatgtgaagaagtgcagtaacgaggggcgagccctg
atgcagctggacttccagcagttcctcaccaagctggagaagctgagcgacctgcggccc
gtccctgacaaggagtttgtggagacctacatcaaggcctactatctgaccgagaacgac
atggagcagttcatcaagaaccaccgggagtactctatgaagcagctggctaacctggtg
aacgtgtgtctgggctctcacatcaacaagaaggctcgtcagaaactgctggctgccatc
gacgacatcgaccgaccacggagatag
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