Osmerus eperlanus (European smelt): 134007079
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Entry
134007079 CDS
T10927
Symbol
arid1ab
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
134007079 (arid1ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oep03000
]
134007079 (arid1ab)
03021 Transcription machinery [BR:
oep03021
]
134007079 (arid1ab)
03036 Chromosome and associated proteins [BR:
oep03036
]
134007079 (arid1ab)
Transcription factors [BR:
oep03000
]
Eukaryotic type
Helix-turn-helix
ARID
134007079 (arid1ab)
Transcription machinery [BR:
oep03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
134007079 (arid1ab)
Chromosome and associated proteins [BR:
oep03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
134007079 (arid1ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
134007079
NCBI-ProteinID:
XP_062302232
LinkDB
All DBs
Position
20:5370402..5404066
Genome browser
AA seq
2325 aa
AA seq
DB search
MAAQVASVATLNTSPPSELKKPDRDPQEESVPGEKQHENKEPGSDSGSPGQKELQDGAAG
GDVGGGGDPDMKNGNGNSSRVNNNNNSQNDTGGPEGNNHPGIGHHHPGPFPPPPYGYNQH
YSRAPFHQHGGQQSPGMAAAAGPAVQPGSMMDPYPPNSHEHGFPNHYNNYSPFPNRTPYQ
GQGYAMNSPRNSQPPAAGGQPGKQQPPGGTTAMAASYNNQRYNMGNPQPTSTPTLNQLLT
SPSSTRSYQNYPQGDYSNQEGASKGPADMGSSQYGGGHPGWQQRSHHPPPMSPGNTGQPL
NRNQPPTPMDQVGKIRGQPYPAANPYTQQQGQGQGQGQGQGPVQGQGQGQGQVPPPGPQQ
GGSYPGQGYGPTGPQRYPMGLQGRTPGSMGGMQYGQQMSAYGQQGPGGYGQQSQGYYGQH
GPPTHPGQQQPPYPGQSQSTPAAQGPYPQQGHPSQPPSQHSQAGPPYPQSQGTQAPPQGQ
PPYNQPPQSQPGQSPYAATQPQQPQQGPQSQQGPAQGQPSYPQPPGPGQPPQQAPSQQQG
TPQQQQPVPPPQAQQPPGHGQPQAQPQPQQGQPSPYSQTPPLQQQQSPFQRFPPPPQELS
QDSFSSQSSAPPSNQPNKSGQEDSMQGRPSSLPVQDLSGSIDDLPTGTEGALSPGVSTSG
VSSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVTPSRSGPLSPAAVPGNPIP
PRPPSVQSDGILHSSMNQSAMGQDRVYMRNPQMPPYGSPQSGSALSPRQSSGGQMHAGMG
SYPQNNSMGSYGPQGAQYGPQGNDPWREERKGIREERKGGEEAGSSRGYPRQPGYSGMPN
ANYTGPGMGGTMNPMPGQAGGAPYAGGMPPGRMGPGQMGPRPYGPGMGPNMAGMPPQVAS
GMCPPPGMNRKEAGAPMHHGPPNSIHNRPPGYPNMPQGMMAAGSPYGSGMNSMQGMMNQG
GPYPMGGNMANNTPGMAPSPEFGMDVKLNPAQKMNNKVEGAPKPETTTKKKSNSSTTTNE
KITRLYELGPEPERKMWVDRYLAFAEEKAMGMNNLPAVGRKPLDLFRLYVSVKEIGGLTQ
VNKNKKWRELATNLSVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFNTDAKKNQ
AKVQPPSPAGSGSLQGPQTPQSTSSSMAEGGELKPPTPASTPHSQMPPMPVVRSVNLQDP
FADGGDPAFARRNAMTPNSAYQPGMGGPEMMGRMGPYEPNKDPFGGMRKAGEQFMTPGPG
PNSGMGEQFPRGPPGPMGTMQMGQRQQFPYGPGYDRRQEPGMGPDGNMVPGTPQTNMMPA
GADTGMYSPSRPPQQQRLDSYGNQYPGQGAPPGGPYPNQQPGMYPQQQPNYKRPVDGGYG
PPAKRHEGEMYNVPFSAQQQQGPQPAGPQGQQDMYNQYNAYPGAERRPPGPQGQFSFPFG
RERGPASGGPNSQSPMPPQMMGSPMQSAPDGPQGPMWQGRNEMGYPNYPNRQGPPVPGQG
PGYHGMNRSEEMMPADQRMNHEGQWPGHVNPRQPPYGPGGSGPPMSRPLQSNYQSSQNHI
PQVSSPAPMPRPMESRTSPSKSPYMHSGIKMLKAAPPVPASHIGQAPVQPPLIRRDVAFP
PGSVEASQPLLKPRRRLTMKEIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSIS
TFNLCQLPGFLELVVEYFRRCLIEIFDILKEYEVGDPGQRTLIDPSAADEDSSDEEGPEQ
EAEDMEEGEEEEEEEEEDEKSGMDISSQVHIKQEKEESSQKDKPTQEEEEGREAASSSSA
EPGSGSAPDPSPPQEKPKQASKFDKLPIKVVRKKDLFLGGRSTKFGRRQSFDSGLVHWSI
GGGDTTEHIQTHLERRSDLAKQRKRTPAAAKARKKSASPEAPATGECPEKAEEEEASQRP
QSSASRRPTAEKEKGAPPLTGAPVTATIDDVLSARPGSVTEEAVRGGAEERKENGKFLFS
INPALQSRRNVKILEDEPHSKDETPLSTLSDWQDALARRCVCISNIVRSLSFIPGNDLEM
SKHPGLLLLLGRLVLLHHRHPERKQAPVTYEKEEEEDEGVSCERDEWWWDCLEVLRENCL
VTLANISGQLDLSVYPESICLPLLDGLLHWAVCPSAEALDPFPSLGPHGALSPQRLVLET
LSKLSIQDNNVDLILATPPFSRLEKLYGSLVRLVGERKVAVCREMAVVLLANLAQGDSLA
ARAIAVQKGSVGNLLGFLEDSLAATQYQQSQSSLLHMQGGAHFEPTSVDMMRRAARALHA
LAKVEENHSEFTLYESRLLDISVSPLMNSLVSHVICDVLFLIGQS
NT seq
6978 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgctagcgtagccactctcaacactagcccgccatccgaactaaaa
aaaccggatcgggacccacaggaggagtcggtaccgggggagaaacaacatgaaaataag
gagccgggatctgacagcggatctccgggacagaaggaactgcaggacggggccgctggt
ggagatgtagggggaggaggggatcctgatatgaagaacgggaacgggaattcgtccagg
gtgaataataataataacagccagaatgatacggggggacctgaggggaataaccatccc
ggaattgggcatcaccacccggggccctttcctccacctccttacggttacaaccagcac
tacagccgggccccttttcatcaacatggcggacaacaaagccctggcatggcagctgca
gcggggccggcagtgcagccaggcagcatgatggacccatacccacccaattcgcatgaa
cacggcttccctaaccattacaacaattacagcccatttccgaatcggactccttatcag
ggccaaggatacgccatgaactccccgcgtaatagtcagcctccggcggctggggggcag
ccaggcaagcaacagccaccaggaggaactacagctatggctgcctcttacaataatcag
aggtataacatggggaacccacaacctacgtctacccctactttaaatcagctcctaaca
tctcctagttctacaaggagctaccagaactatccacaaggagactatagtaaccaggaa
ggggccagcaagggaccagcagacatgggcagtagccagtatggtgggggccatccgggt
tggcaacaaaggagccaccatcctcctccaatgagcccgggaaacactggacaacctcta
aatagaaatcagccccccaccccgatggaccaggtagggaagattcgaggacagccgtac
ccggcggccaacccctacacccagcagcagggccagggccaggggcagggacagggccaa
ggcccggtccagggccaggggcagggacaggggcaggtcccgccaccgggaccccagcaa
ggaggctcgtaccctggccagggctacggccccacaggcccacagaggtaccccatgggt
ctgcagggtcgcacccctggaagcatgggaggaatgcagtatggacaacagatgtcagcc
tatggacagcagggtccagggggctatgggcagcagagccagggctactatgggcagcac
ggccctccaacccaccctggccagcagcagcccccctacccaggccagtcccagagcacc
ccagcagcccagggcccgtacccccagcagggccacccctctcagccgcccagccaacac
agccaggccggccccccctacccccagtcccagggcacgcaggcccccccccagggccag
cccccttacaaccagcccccccagtctcagcctggccaatcgccctacgccgcaacccag
cctcagcagccgcagcagggccctcagagccagcagggcccggcccagggccagcccagc
tacccacagcccccaggcccggggcagccccctcagcaggccccgtcgcagcagcaagga
accccccagcagcagcagcctgtacctcctccccaggcccagcagcctccaggccatggc
cagcctcaggcccagccccagccccagcagggacagccctcgccctactcccagacccct
cccctgcagcaacagcagtctcccttccagaggtttccccctcctccccaggagctatcc
caggattcctttagctcccagtccagcgctcccccctccaaccagcccaacaagagcggc
caggaagacagcatgcagggccggccttctagcttgccggtccaggacctgtcgggctcc
atcgacgacctgcccacggggacggagggcgccctgagccccggggtcagcacgtcgggc
gtgtccagcagccagggcgagcagagcaaccccgcccagtcgcccttctccccccacacc
tcgccgcacttgcccgggatccggggcccgtcgccctcccccgtgggctcccccgccagc
gtcaccccctctcgctccggacccctgtcccccgcggctgtgccaggtaacccgattcct
cccaggccacctagtgtccagtcggatgggatcctgcactcttccatgaaccagtcagcc
atggggcaggacagggtgtacatgcggaaccctcagatgcctccgtacggctccccccag
tctggctctgccttatccccacgccagtcatcgggaggccagatgcatgcagggatgggg
tcctacccccagaacaactccatgggcagctacggccctcagggcgcccagtacggaccg
caaggtaacgacccctggagggaggagaggaaaggaatcagagaggagaggaaaggaggg
gaggaagcagggagtagcagaggatacccacggcagcccggctacagcgggatgcccaac
gccaactacacgggccccggcatgggcggcaccatgaaccccatgccgggccaggccgga
ggggctccgtacgcggggggcatgccccccggcaggatgggccccgggcagatggggccg
cgcccctacggccccgggatgggccccaacatggccggcatgccccctcaggtggcctcc
gggatgtgtccccctccgggcatgaacaggaaggaggctggcgcccccatgcaccacggc
ccccccaactccatacacaacaggccgccgggctaccccaacatgccccagggcatgatg
gccgccggctccccctacgggtcgggcatgaacagcatgcagggcatgatgaaccaggga
gggccctaccccatggggggcaacatggccaacaacacccccggcatggcgcccagcccg
gagttcggcatggacgtcaaactcaaccccgcccagaagatgaacaacaaagtggagggc
gcccccaaacccgagacgaccacgaaaaagaagtcgaactcctccacgacgaccaacgag
aagatcacgcgcctgtacgagctgggcccggagccggagaggaagatgtgggtggaccgc
tacctggcctttgccgaggagaaggccatggggatgaacaacctgccggcggtggggcgc
aaacccctggatctcttcaggctctacgtgtctgtcaaggagatcggaggcctcacgcag
gtgaacaagaacaagaagtggcgcgagctggccaccaacctgagcgtgggcacgtccagc
agcgcggccagctccctgaagaagcagtacatccagtgtctgtacgccttcgagtgcaag
atcgaacgcggcgaggacccgccgccggacatcttcaacacggacgccaaaaagaaccag
gccaaggtccagcctcccagcccagctggctctggatctctgcagggcccccaaacgccc
cagtccaccagtagttccatggcggaggggggtgagctgaagcccccgacccccgcctcc
accccccacagccagatgccccccatgcctgtggtcaggagtgtgaacttgcaggacccc
tttgctgatggcggagaccctgcctttgccaggcggaacgccatgacccccaactcagcc
taccagcccgggatgggcgggccggagatgatgggccgcatgggcccctacgagcccaac
aaggaccccttcggtggcatgaggaaagctggagagcagtttatgactccaggccccggc
cccaacagtgggatgggggagcagttcccccgtggccccccagggcccatggggaccatg
cagatgggccagaggcagcagttcccctacgggccaggatacgacaggagacaggagccc
ggcatgggccccgatggcaacatggtccccggaacgccccaaaccaacatgatgcccgct
ggtgccgacacagggatgtactctcccagccgccccccccagcagcaacggcttgattcc
tatggtaatcagtaccctggccaaggagcaccccctggtggaccgtaccccaatcagcag
ccaggaatgtatccacagcaacaaccgaactacaagcggcctgtggacgggggctacggc
cctccagccaagcgccacgagggggagatgtacaacgtccccttcagcgctcagcagcaa
cagggcccccagcccgcgggcccccagggccaacaggacatgtacaaccagtacaacgcc
tacccaggggccgagcggaggccccccggcccccagggacagttctccttccccttcggc
cgggagcgggggccggcctccggaggacccaactcccagtcccccatgcctccccagatg
atgggcagccccatgcagtcggccccggacggcccccagggtccaatgtggcagggccgc
aacgagatgggctaccccaactaccccaaccgccaaggccctccggtgccgggccagggc
cccggctaccacggcatgaaccgctccgaggagatgatgccggccgaccagcgcatgaac
cacgagggccagtggcctggccacgtcaacccgaggcagcccccctacgggccggggggc
tcgggtcctcccatgtccaggcccctgcagtccaactaccagtcctcccagaaccacatt
ccccaggtgtccagcccggcgcccatgccccggcccatggagagcaggacgtcgcccagc
aagtcgccctacatgcactcgggcatcaagatgctgaaagccgcgccccccgtgcccgcc
tcgcacataggccaggcccccgtgcagcccccgctcatcaggcgggacgtggcattcccc
ccgggctccgtggaggcctcccagcccctcctcaagccccgcagaaggctcaccatgaaa
gagatcggcacaccagaagcttggcgagtgatgatgtccctaaaatcaggcttactagct
gaaagcacttgggccttggacacgataaacattctgctgtatgacgacaacagcatctcc
actttcaacctctgtcagcttcccggtttcctggagctggtggtggagtacttccgacgc
tgcctcatcgagatcttcgacatcctgaaggagtacgaggtgggcgaccccggccagcgg
accctcatcgaccccagcgccgccgacgaagacagctccgacgaggagggtccagaacag
gaagcggaagacatggaggaaggcgaggaggaggaggaggaggaggaggaggacgagaag
agcggcatggacatctcatcgcaggtccacatcaagcaggagaaggaggagagctcgcag
aaggacaagcccacgcaggaggaggaggaagggcgggaagcagcgtcttcgtcctccgcg
gagcccggctccggctcggccccggaccccagcccgcctcaggagaagcccaagcaggcc
agcaagttcgacaagctccccatcaaggtggtccggaagaaagacctgttcctggggggg
cgctccaccaagttcggcaggcggcagagcttcgacagcgggctggtccactggagcatc
ggcgggggcgacaccacggagcacatccagacccacttagagaggcggtcggacctcgcc
aagcagcggaaacgaacgccggccgccgccaaggccaggaagaagagcgcgtcgcccgag
gcgccggcgacgggcgagtgcccggagaaagccgaggaggaggaggcgtcccagcggccc
cagtcctccgcgtcccgacgccccaccgcggagaaagagaagggcgcccccccactcacc
ggcgcccccgtcaccgccaccatcgacgacgtcctgtcggcccggccgggctccgtgacg
gaggaggcggtgcgcggcggcgccgaggagcggaaggagaacggcaagttcctgttcagc
atcaacccggcgctgcagagccggcgcaacgtcaaaatcctggaggacgagccgcacagt
aaggacgagacgcccctgagcacgctgtcggactggcaggacgcgctcgcccggcgctgc
gtctgcatctccaacatcgtccggagcctctccttcatccccggcaacgacctggaaatg
tccaaacacccgggcctgctgctgctgctgggccgcctggtgctgctccaccacaggcac
ccggagcgcaagcaggcacccgtcacctacgagaaggaggaggaggaggacgagggcgtg
agctgcgagcgggacgagtggtggtgggactgcctggaggtgctgcgggagaactgcctc
gtcaccctggccaacatctccggccagctcgacctctccgtctacccggagagcatctgc
ctgccgctgctggacggcctgctccactgggccgtctgcccctcggccgaggccctggac
cccttcccctccctggggccccacggggcgctgtccccccagagactggtcctcgagacc
ctcagcaagctcagcatccaggacaacaacgtcgacctcattctggccacgccgcccttc
agccgcctggagaagctgtacggctcgctggtgcgcctcgtcggggagcgcaaggtggcc
gtctgccgggagatggcggtggtcctgctggccaacctggcccagggcgacagcctggcg
gcccgcgccatcgcggtgcagaagggcagcgtggggaacctgctgggcttcctggaggac
agcctggcggccactcagtaccagcagagccagagctccctgctgcacatgcagggcggg
gctcactttgagcccaccagcgtggacatgatgcggcgagccgcccgggccctgcacgcc
ctggccaaggtggaggagaaccactcggagttcacgctgtacgagtcgcggctcctggac
atctccgtgtcgcccctcatgaactcgctggtgtcccacgtgatctgtgacgtactgttt
ctgatcggccagtcatga
DBGET
integrated database retrieval system
