Osmerus eperlanus (European smelt): 134007118
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Entry
134007118 CDS
T10927
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oep04040
]
134007118 (scn1lab)
Ion channels [BR:
oep04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
134007118 (scn1lab)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
IQ
ATP-synt_B
New_glue
Spem1
FUT8_N_cat
DICT
Motif
Other DBs
NCBI-GeneID:
134007118
NCBI-ProteinID:
XP_062302271
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All DBs
Position
21:1219666..1249431
Genome browser
AA seq
2018 aa
AA seq
DB search
MAQLLVPPGPDSFRLFCPESLAAIERRIAEEEARRPRGERRGDSDDENGPKPNSDLEAGK
SLPFIYGDVPSGMGSTPLEDLDTFYCNQKTFIVLNRGKAIFRFNATPALYILSPFNPLRR
ISIKVLVHSMFSMLIMFTILTNCAFMTLSHPPDWAKNVEYTFTGIYTFESLIKILARGFC
VGKFTFLRDPWNWLDFSVISMAYITEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRMPRNDTNEDPYLNGTMLDLN
GTMLDLNGTDLNFTNPFNWTEYISDESNYYYLPTRRDALLCGNGSGSGDCPEGFSCIKAG
RNPDYGYTSFDTFSWAFLSLFRLMTQDFWEGLYQQTLRAAGKPYMMFFVLVIFLGSFYLV
NLILAVVAMAYDEQNQATIEEALQKEEEFQAMLEQLKRQQEEAQVAAAAATESGEYSGRG
GQSESSSGTSKLSSKSAKERRNRRRKRKQREEEEERGVRDKFHKSESEDSIKRSFRFSID
ANRLSYEKRCSSPNQSLLSIRGSLFSPRRNSRASLFSFRGRARDVGSENDFADDEHSTFE
DSDSRRGSLFVPRRSERRCSTVSQTSLAAPRILLPANGKMHCAVDCNGVVSLVGGTSVPT
SPVGLLLPEGTTTDTDLKRRRSRQPSMDYLEEPGVRQRAMSVASILTNTMEELEESRQKC
PPCWYKFANTYLIWDCCPQWLKVKEIVNMVVMDPFVDLAITICIVLNTLFMAMEHYPMTK
EFNDVLSVGNLVFTGIFTAEMCFKIIALDPYYYFQEGWNIFDGIIVSLSLMELGLANVEG
LSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGK
SYRDCVCKIADNCKLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQGMCLIVFMM
VMVIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQIAVGRMGRGFAFIKSALRHFL
QSLCLGGAGKGGSAEESKPLDELHHSNGKGNCISNHTTVEITKEPAAYLKEGNGRPGGGL
GLGVVVGGDGSGMEKFPLEECDYMSFIHNPSLTVTVPIAVGESDFENLNTEEFSSDSSDV
EGSREKLAEPTHLSSSEGSTVDIQPPGDGGESIELEPEESLDPEACFTEGCVSRFQCCQV
NIEEGRWKMWWNLRKTCFIIVEHNWFETFIIFMILLSSGALAFEDIYIEQRKNIKTVLEF
ADKVFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVANALGYSELTAIKS
LRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYY
YCVNTTNDETIPVSLVNNKSECLALVNDSARWKNVKINFDNVGAGYLALLQVATFKGWMD
IMYAAVDSRNVEDQPEYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQ
DIFMTEEQKKYYNAMKKLGSKKPQKPIPRPTNAFQGCVFDFITKQAFDIVIMILICLNMV
TMMVETDNQTEDMDNILDWINLVFIVLFTGECVLKMISLRHYYFTIGWNVFDFVVIILSI
VGMFLSELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLL
LFLVMFIYAIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQITTSAGWDSLLAPILNK
REPDCDSQMEHPGNLYKGNCGNPSVAIFFFVSYIIICFLIVVNMYIAVILENFSVATEES
AEPLSEDDFEMFYEVWERFDPDATQFMEYGKLSDFADALDPPLRIAKPNKIQLISMDLPM
VSGERIHCLDILFAFTKRVLGEGGEMDVLRGQMEERFMASNPSKVSYEPITTTLRRKQED
MSAIIIQRNFRSYLLRRTIKKASIIYREQQRDGLRDLEKEVLVVSKFNENSTSDKMDMTP
STASPPSYNSVTKSEKDKYEKDKREKEDKEKDLREKKK
NT seq
6057 nt
NT seq
+upstream
nt +downstream
nt
atggcccagctgcttgtaccgcccggaccagacagcttccgtctcttctgccccgagtcg
ctggccgctatcgagaggcgcatcgccgaggaggaggcccggagaccgcggggggagcgc
cgcggcgacagcgatgacgagaacgggcctaagcccaacagtgacctggaggcgggaaag
tcgctccccttcatctacggggacgtcccctcagggatgggctccacccccctggaggac
ctggacaccttctactgcaatcagaaaacctttatagtattgaatcgtgggaaagccatc
ttccgtttcaacgccacccctgccttgtacatcttaagtcccttcaaccccctgaggaga
atatcaattaaagttctagttcactcgatgttcagcatgttgattatgttcaccatcttg
accaactgtgctttcatgactctgagtcacccgccagactgggctaagaatgtagagtac
acattcacagggatttacacgtttgagtccctcatcaagatcctggcacgaggcttttgt
gtggggaagttcaccttcctgcgggacccatggaactggctggacttcagtgtaatctcc
atggcgtatataacagagtttgtaaacctaggcaatgtttcagctctgcgcacgttcaga
gtattgagagctttgaaaactatctcagttattccaggcctgaagaccatcgtgggcgct
ctgatccagtcagtgaagaagctgtctgacgtcatgatcctcaccgtgttctgcctcagt
gtcttcgctctgattggcctgcagctcttcatggggaacctgaggcaaaagtgtgtccgc
atgccacgtaacgacaccaatgaggacccgtacctcaacggcaccatgctggacctcaac
ggcactatgctggacctcaacgggacagacctaaacttcaccaaccctttcaactggacc
gagtacatcagcgacgagagtaattactattaccttccgacccgcagggatgctctcctc
tgtgggaacggcagtggttctggggattgtcccgagggcttcagctgcatcaaagcgggc
cgtaaccctgactacggctacaccagcttcgacacgttcagctgggccttcctgtctctg
ttcaggctaatgactcaggacttctgggaaggcctctaccagcagactctccgggcggca
gggaagccctacatgatgttcttcgtgctggtcatcttcctgggctcgttctacctggtg
aacctgatcctggccgtggtggccatggcgtacgacgagcagaaccaggccaccatcgag
gaggccctgcagaaggaggaggagttccaggccatgctggagcagctgaaacgacagcag
gaagaagcccaggttgccgcggcagcagccacggagagcggagagtacagcgggagaggg
ggccaatcagaatcgtcctccgggacttcgaagctcagctctaaaagcgccaaggagaga
cgcaaccggcgcaggaagaggaagcagagggaggaggaggaggagaggggtgtccgcgac
aagttccacaagtccgagtcagaggacagcatcaagaggtccttccgcttctctatcgat
gccaaccggctgtcgtacgagaagaggtgctcctctcccaaccagtctctcctcagtatc
cgaggctctctcttctctcctcggaggaacagccgcgccagcctcttcagcttccgaggc
cgtgcccgtgacgtgggctccgagaacgactttgccgacgacgagcacagcaccttcgag
gacagcgacagccgtcgggggtctctgttcgtgccgcggcgctctgagcggcgctgcagc
accgtgagccagaccagcctggccgctcccaggattctgctccccgccaacgggaagatg
cactgtgccgtggactgtaacggggtggtgtccctggtgggaggcacctccgtgccaacc
tcgcctgtcggcctcctgctgcctgaggggacgaccactgacacggacctgaagagacgg
cgctcgcgtcagccctccatggactacctggaggagccaggagtgcgccagagggccatg
agcgtggccagcatcctcaccaacaccatggaggagctggaggagtccagacagaagtgt
cctccttgctggtacaagtttgccaacacgtacttgatctgggactgctgtccccagtgg
ctgaaggtcaaggagatcgtgaacatggtggtcatggatccgtttgtggacctggccatc
accatctgcatcgtgctcaacaccctgttcatggccatggagcactatcccatgaccaag
gagttcaacgacgtcctgtccgtggggaacctggtgttcacaggcattttcacggctgaa
atgtgcttcaagatcattgctctggatccctactactacttccaggagggctggaacata
tttgacggcatcatcgtcagcttgagcctgatggagctgggcctggctaacgtggagggg
ctgtcggtgctgaggtccttccggctgctgagagtgttcaagctggctaagtcgtggccc
accctcaacatgctgatcaagatcatcgggaactctgtgggcgccctgggtaacctgact
ctggtcctggccatcatcgtgttcatcttcgccgtggtgggcatgcagctgtttgggaag
agctacagggactgtgtgtgtaagattgccgacaactgcaagctgcctcgctggcacatg
cacgacttcttccactcgttcctgatcgtgttccgggtgctgtgcggggagtggatcgag
accatgtgggactgcatggaggtggccggccagggcatgtgtctgatcgtcttcatgatg
gtcatggtcatcggcaacctggtggtcctcaacctgttcctggccttgctgctcagcagt
tttagcgctgacaacctggccgccaccgacgacgacagtgagatgaacaacctgcagatc
gccgtgggccgcatgggccgcggcttcgccttcatcaagtccgcgctgcgccacttcctc
cagagcctgtgtttgggcggtgcggggaaagggggctccgccgaggagagcaaacccctg
gacgagctccaccacagcaacggcaagggcaactgcatctccaaccacaccactgtggag
atcaccaaggagcccgccgcttacctcaaggagggcaacgggcgtcctggagggggactg
gggctcggggtggtggtcgggggagacggctcagggatggagaagttccccctggaggag
tgcgactacatgtcgttcatccacaaccccagcctgacggtgacggtgcccatcgccgtg
ggcgagtcggactttgagaacctgaacacggaggagttcagcagcgactcgtcagatgtg
gagggcagcagagagaagctagcggagcccactcacctcagctcctctgagggcagcacg
gtggacatacaaccacctggagacggaggggagtccatagagctggagccagaggagtcc
ctggacccggaggcctgcttcaccgaggggtgtgtgagcaggttccagtgctgtcaggtg
aatatagaggagggcaggtggaagatgtggtggaatctaagaaagacctgcttcatcatc
gtggaacacaactggtttgaaacattcatcatcttcatgattctgcttagcagtggagcc
ctggcgtttgaagacatctacatcgaacagaggaagaacattaagaccgttttggagttt
gctgataaagtgttcacctatatcttcatcttggagatgcttctcaaatgggtggcctac
ggatttgtcaaatacttcactaacgcctggtgctggctcgacttcctcatagtagacgtg
tctctggtgagtctcgtagccaacgccctgggctactctgagctgactgccatcaagtcc
ctgcggacgctgcgtgccttgcggccactcagggccctgtcacgattcgaggggatgagg
gtggttgtgaacgctctgctgggggccatcccctccatcatgaacgtgctgctggtgtgc
ctgatcttctggctcatcttcagcatcatgggcgtcaacctgtttgctgggaagtactac
tactgtgtgaacaccaccaacgatgagaccatccccgtcagcctggtcaacaacaagagc
gagtgtctggctctggtcaacgacagcgcccgctggaagaacgtcaagatcaacttcgac
aacgtgggggcggggtacctggccctgctgcaggtggcaacgtttaaaggctggatggac
attatgtacgcagctgtggactcccgcaatgtggaggatcagccggagtatgaggtcaac
ctctacatgtatctctactttgtcatcttcatcatcttcggctccttcttcaccctcaac
ctcttcatcggcgtgatcatcgacaacttcaaccagcagaagaaaaagtttggaggtcag
gacatcttcatgacggaggaacagaagaagtactacaatgccatgaagaagctgggctcc
aagaagccccagaagcccatccccagacccacgaacgcgtttcaaggctgtgtttttgac
ttcatcacaaagcaagcctttgatattgtcatcatgattctcatctgccttaacatggtc
accatgatggtagagacggacaaccagactgaagacatggacaatattctggactggata
aacctggtcttcatagttctgttcacgggcgaatgtgtgctgaaaatgatctcactacgt
cattactacttcactattggctggaatgtattcgactttgtggttataattctgtccatt
gtaggcatgtttttatcagaactgatagagaagtactttgtgtctcctacgttgttccgt
gtcatacgtctggctcggatcggtcgcatcctccgtctcatcaaaggagccaagggcatc
cggacgcttctatttgccttgatgatgtcacttcccgccttgttcaacatcggcctcctg
cttttcctggtcatgttcatttacgccatcttcggcatgtccaacttcgcctacgtcaaa
cgggaggcgggcatcgacgacatgttcaacttcgagacgttcggcaacagcatgatctgc
ctgttccagatcaccacctctgccggctgggacagcctgctggcacccatcctgaacaag
agggagcctgactgtgacagtcagatggaacaccccggcaacctgtacaaggggaactgc
ggcaacccctcagtggccatcttcttcttcgtcagctacatcatcatctgcttcctcatc
gtggtcaacatgtacatcgccgtcatcctggagaacttcagcgtggcgaccgaggagagc
gccgagcccctcagcgaggacgactttgagatgttctacgaggtgtgggagcgcttcgac
cccgacgccacgcagttcatggagtacggcaagctgtcggacttcgcggacgccctggac
cctccgctgcgcatagcgaagcccaacaagatccagctgatctccatggacctgcccatg
gtgagcggcgagaggatccactgcctggacatcctgttcgccttcaccaagcgcgtcctg
ggcgagggaggagagatggacgtgctccgcgggcagatggaggagcgcttcatggcatcc
aacccctccaaggtgtcctacgagcccatcaccaccacgctgcgacgcaagcaggaggac
atgtcggcgatcatcatccagaggaacttccggagctacctgctccgtcgcaccatcaag
aaagcctccatcatttacagggagcagcagcgtgacggcctgcgggacctggagaaggag
gtgctggtggtcagcaagttcaacgagaactccacctcggacaagatggacatgacgcct
tccacggcctcgccgccctcctacaacagcgtgaccaagtcggaaaaagacaaatacgag
aaggacaagagggagaaggaggataaggagaaagacttgagggagaagaagaaataa
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