Osmerus eperlanus (European smelt): 134007144
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Entry
134007144 CDS
T10927
Symbol
trim25l
Name
(RefSeq) tripartite motif-containing protein 16
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
134007144 (trim25l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oep04121
]
134007144 (trim25l)
Enzymes [BR:
oep01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134007144 (trim25l)
Ubiquitin system [BR:
oep04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
134007144 (trim25l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRIM_CC
PRY
SPRY
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_3
zf-RING_UBOX
zf-B_box
zf-C3HC4_2
RING_XB3-XBAT31
zf-RING_2
ANCHR-like_BBOX
zf-RING_5
Tweety
Trypan_PARP
zf-RING_6
U-box
Snf7
Fes1
ALMT
Motif
Other DBs
NCBI-GeneID:
134007144
NCBI-ProteinID:
XP_062302334
LinkDB
All DBs
Position
21:7747582..7753307
Genome browser
AA seq
809 aa
AA seq
DB search
MSKLWTDEQFNCPVCLDLPRDPVTIPCGHSYCMACIKDYWSKDDPKGAYSCPQCRQSFSP
KPSLSRNTMLAEAVEQLRKGSLSSALRESVRSTLRPSSSASSGARAGWARSAGLSPSAVP
CDMCPGEQRAAVKSCLACMSSYCEAHLKPHRTKEALKNHELIPPMGQLAQKICTQHKYLQ
EFYCRQCQMYVCWLCTSNEHKGHDSASTKAVRMERQKELSGVQTENHQRLKEREAELKEM
KKTVEAMKRSAARVHEDAELTLSDLQLSLEKLQELVEEVMDSTGREKVVEAQEVVDKLED
EITERRRRDVEMKDLVRCEDNIYFLETFESLSSPLEAGHLPSVLANPEASYEPVRDFILD
LREKVEDLCNQELDKITKTVNDTTLFTLGDSAKNGDQKMGGFLKLLSGLGTRDTNNSRPQ
PPTPSVSVGVRGPERRGQGVGRRAQDVRSRDGPRVDRGNKSPPRTRDKQRREEKEPAPSP
RPSPSPIPSRRESRSLWNRPEPTQVFHTPDPAPAPTPAPTPAPTPAPAPQASSGFSRMAS
ISSLFRSNRRTATPAQPAASTPAANSWGMGTVVETPTEVNPSLFLDSPVDTPSFPGLREI
SLDCIQAPEPRTREEFLQHVCNLVLDSNTAHRRLSLSEGKTKATLQGATQPYPDIPQRFD
GWTQVLCLNPLSAQRCYWEVEWRGRGSSIGVAYGALRRKGSDSKAGLGYNAQSWSLELSD
TCCSAMHDNEKKDIPVAYSPRVGLFLDAAAGTLSFYGVAESMEHLHTFRANFTQPLYAAF
GVGSGVGVGLDFALGQFSSHSDSIKICPM
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagctgtggacagacgagcagttcaactgccccgtgtgtctggacctgcccagg
gaccccgtcaccatcccctgcggccacagctactgcatggcctgcatcaaggactactgg
agcaaggacgaccccaagggcgcgtacagctgcccccagtgccggcagtccttcagcccc
aagccctcgctctccaggaacaccatgctggccgaggccgtggagcagctccgcaagggc
tccctcagctccgccctgcgggagtcggtgaggagcaccctccgcccctcgtcctccgcc
tcgtccggcgcccgcgcggggtgggcccgctccgccgggctgtcgccctcggcggtgccg
tgcgacatgtgccccggcgagcagcgcgctgccgtgaagagctgcctggcgtgcatgagc
tcgtactgcgaggcccacctgaagccgcaccggaccaaggaggcactgaagaaccatgag
ctcatccctcccatgggtcagctggcccagaagatctgcacccagcacaagtacctccag
gagttctactgtcgccagtgtcagatgtacgtgtgctggctgtgcaccagtaacgagcac
aaggggcacgacagcgcctccaccaaggctgtgcgcatggagagacagaaagagctgtcg
ggggtgcagactgagaaccaccagaggctgaaggagagagaggcggagctgaaggagatg
aagaagaccgtggaggccatgaagcgctcggcagcgagggtccacgaggatgcggagctc
accctgtcggacctccagctctccctggagaagctgcaggagctggtggaggaggtgatg
gactccaccgggcgggagaaggtcgtggaggcccaggaggtggtggacaagctggaggat
gagatcaccgagcggaggagaagggacgtggagatgaaggacctggtcaggtgcgaagac
aacatctacttcctggagacgtttgagtccctcagcagtccgttggaggcgggacacctc
cccagtgtgctggccaatcccgaggcttcctacgagcccgtgcgtgacttcatcctggac
ctgagagaaaaggtggaagacttgtgtaaccaggagctggacaagattaccaagacagtg
aatgacacaacactgttcactttgggagacagtgccaagaatggggaccagaaaatggga
ggtttcttaaaattgctgtctggcctgggcacccgggacacaaacaacagccgtcctcaa
cctccgacaccaagtgtttcggttggggttcgggggccagagaggcgggggcaaggtgtg
ggtcggagagcccaagatgtccgatcccgtgacgggccgagagttgacagaggaaacaaa
agtccaccaagaaccagagacaagcagaggagagaagagaaagagccagcccccagccct
aggcctagccccagccctatccccagccgcagagagtcacgttctctgtggaaccgacct
gagcctacccaggtcttccacacacctgatcctgccccagccccgaccccagccccgacc
ccagccccgaccccagccccagcacctcaagcctcatcaggtttcagtcggatggcctcc
atatcgagtctgttccgctccaatcgccgcacggccacaccagcgcagcctgcagccagc
actcctgcagccaactcctggggaatgggcactgtggttgaaacaccaaccgaagttaat
cccagccttttcttggattctccagtcgacaccccatccttccctggattgagggagatc
agcctagactgtatccaggccccagaacccaggaccagagaagagttcctgcaacacgtc
tgtaacctggtcctggactccaacacggcccaccggcgcctcagcctgtcggagggcaaa
accaaggccaccctccagggggcgacgcagccctaccccgacatcccccagcgcttcgac
ggctggacccaagtgctgtgcctcaaccccctctccgcccagcgctgctactgggaggtg
gagtggagggggagaggctcctccataggcgtggcctacggcgccctgaggaggaagggg
tccgactcgaaggcggggctgggctacaacgcccagtcgtggagcctggagctgtcggac
acctgctgctcggccatgcacgacaacgagaagaaggacatccccgtggcctactcgccc
cgcgtgggcctgttcctggacgccgcggcgggaacgctctccttctacggcgtggccgag
agcatggagcacctgcacactttccgcgctaacttcacccagcccctgtacgcggccttt
ggggtgggcagcggggtgggtgtgggcctggactttgctctgggtcagttcagctcccac
tcggacagcatcaaaatctgccccatgtga
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