Osmerus eperlanus (European smelt): 134008453
Help
Entry
134008453 CDS
T10927
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
134008453 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oep03021
]
134008453 (taf5)
03036 Chromosome and associated proteins [BR:
oep03036
]
134008453 (taf5)
Transcription machinery [BR:
oep03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
134008453 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
134008453 (taf5)
Chromosome and associated proteins [BR:
oep03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
134008453 (taf5)
STAGA complex
134008453 (taf5)
TFTC complex
134008453 (taf5)
SAGA complex
134008453 (taf5)
SLIK complex
134008453 (taf5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
Beta-prop_THOC3
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
WDR55
Beta-prop_VPS8
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
NBCH_WD40
DSE1_N
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_Aladin
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
PAC11
CFAP251_N
Beta-prop_Vps41
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_HPS5
ASA1
Beta-prop_SPT8
Beta-prop_DCAF12
Beta-prop_WDR19_1st
Beta-prop_NOL10_N
Tricorn_2nd
Beta-prop_Nup120_160
WD_LRWD1
PEP5_VPS11_N
LisH_PAC1
eIF2A
PROPPIN
LisH_TPL
Beta-prop_ACSF4
Motif
Other DBs
NCBI-GeneID:
134008453
NCBI-ProteinID:
XP_062303823
LinkDB
All DBs
Position
22:complement(10647726..10652908)
Genome browser
AA seq
756 aa
AA seq
DB search
MAAVQGGQIDPEGEKDIKTEPSNDGSGNNNANDGGVLSSSPGATSSSGTTKTLTAGAEDQ
QTLLAVLQFLKRNKLSESVDILRREAGLSDDADDSKVSDTAGSGLGSTVNVDAEGGDANS
LLNRVTIATAAPPATAAPAPTKVPASGGEDQPDVNVVLSAYSQQGDPPLYQVYYSGLKKF
IESVLDCHRAELSQVFYPLFVHMYLELVYNNHEMEAKAFFEKFSGDQECYYEEDLRILSS
LTKKEHMKGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDG
MPRSKGQIDAMSGSLAGEGKRDANKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKK
PKKDSMGNKSKKQDPNAPQQNRIPLPELKDSDKLDKIMNMKEATKKIRLGPDNLPSICFY
SFLNAYQGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRRVKSAADLSLIDKESDDVL
ERIMDEKTASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTYTCLVGYKGH
NYPVWDTQFSPYGYYFISGGHDRVARLWATDHYQPLRMFAGHLADITCTRFHPNSNYVAT
GSADRTIRLWDILTGNCVRILTGHKGPIHALAFSPNGKFMASGATDGRVLLWDIGHGLMI
GDLKGHTDTIYSLKFSRDGEILASASMDNTVKLWDSMKAFDELETDDFTMATGHIHLPEN
SKELLLGTYLTKSTPVIHLHFTRRNLLLAAGAYNPC
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtacaaggtggtcagatcgacccggagggtgaaaaagatattaaaacagaa
ccatcaaacgatgggtcaggaaacaataatgcaaacgatggaggagtactttcttcatct
cctggtgccacgtcttctagcggaacaacgaaaactttaactgcaggggccgaagatcag
cagaccttgctagcggtgttgcaatttctcaagagaaataaattgtcggagtctgtagac
attttgcggcgtgaagccggtttatcagatgatgcagatgattcaaaggtatcggatact
gcaggatcgggcttgggaagtaccgtgaatgttgatgctgaaggcggggatgccaactct
cttctgaaccgggtgaccatagccaccgccgctcccccagccacagcggcaccggcgcca
acaaaagtgccggcgtcaggcggtgaggatcaacccgacgtcaacgttgtcctgtctgca
tacagccagcagggggatcccccactataccaagtctactatagcggcttgaagaagttt
atcgagtctgttctcgattgtcaccgagctgagttgtcccaggtcttctaccctctcttc
gtccacatgtacctggaacttgtgtacaacaaccacgagatggaggcaaaggctttcttc
gaaaagttcagcggggaccaggagtgctactacgaggaggacctgcgtatcctctccagc
ctgaccaagaaggaacacatgaagggcaacgagaccctgctggacttcaggaccagcaag
ttcgtcctgaggatctccagggactcgtaccagctcctgaagaggcacctccaggagcgc
cagaacaaccagatttggaacatcatccaggagcacctctacatcgacatcttcgacggc
atgccgcgcagcaagggccagatcgacgccatgtccgggagtctggccggggagggcaag
agggatgcaaacaaagctaaggtgttctacggcctgctgaaggagccggagatcgaggtg
cccctggacgacgaggacgaggaggcggagaacgaggagggcaaacccaagaagaagaag
cccaagaaggacagcatgggcaacaagagcaagaagcaggaccccaacgccccccagcag
aacaggattcctctcccagagctgaaggactctgacaagctggacaaaatcatgaacatg
aaggaggctactaagaagatcagactggggccggacaacctgccctcaatctgcttctac
tctttcctcaacgcataccagggtctgacggcggtggacttcacggacgattccagcctg
attgcggggggcttcgcggactccaccgtcagggtgtggagcgtaacgcccaagaagctg
cgcagggtcaagtcagcagcagacctcagtctgatagacaaggagtctgacgatgtgctg
gagaggatcatggatgagaagacagccagcgagtccaaaatcctctacgggcacagcggg
ccagtttacggcatcagcttcagccctgacaggaactacctgctgtccagttccgaggac
ggcaccgtgcgactgtggagcctccagacgtacacctgtttggtggggtacaaaggacac
aactaccccgtctgggacacccagttctccccctacgggtactacttcatctctggaggg
cacgacagggtggcacgtttgtgggccactgatcactaccagccgctgcgtatgttcgcc
ggccacctggcggacatcacctgcacccgcttccaccccaactctaactacgtggccacc
ggctcggccgaccgcaccatccgcctctgggacatcctcacggggaactgcgtccgcatc
ttaaccggtcacaagggccctatccatgccctggccttctcacccaacgggaagttcatg
gcgtctggagccactgatggcagagtgctgctgtgggacattggccacggcctgatgata
ggagatctgaagggccacactgacaccatctactccctcaagttcagcagagacggagag
atcctcgcctcagcttccatggacaacaccgtcaagctatgggactccatgaaggcgttc
gacgagttggagaccgacgacttcaccatggccacgggtcacatccatttaccagagaac
tccaaggagcttctactgggcacctacctgaccaagtcgacccccgtcatacacctccac
ttcacccgtaggaatctactgctcgctgcaggcgcttacaacccctgctga
DBGET
integrated database retrieval system
