Osmerus eperlanus (European smelt): 134008535
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Entry
134008535 CDS
T10927
Symbol
shoc2
Name
(RefSeq) leucine-rich repeat protein SHOC-2
KO
K19613
leucine-rich repeat protein SHOC2
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
134008535 (shoc2)
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GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_14
LRR_LRWD1
LRR_9
LRR_13
LRR_At5g56370
LRR_NLRC4
Motif
Other DBs
NCBI-GeneID:
134008535
NCBI-ProteinID:
XP_062303930
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Position
22:complement(11463120..11475125)
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AA seq
586 aa
AA seq
DB search
MSSTLGKDKDLKEKDPKGGLAVGRERDKEAKATLASFGGGKDGGKEPKTKGKDAKEGKKD
AGSAPPAVAFSVDDKIKRPNPAPGTRKKSSNAEVIKELNKCREENSMRLDLSKRSIHMLP
TSIKELTQLAELYLYSNKLQSLPGEVGCLSGLVTLALSENSLTSLPDSLDSLKKLRMLDL
RHNKLREIPAVVYRVTSLTTLYLRFNRITAVERDIQNLAKLTMLSIRENKIKQLPAEIGE
LCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPETIGNLLSINRLGLRYNRL
SAIPRSLAKCRELEELNLENNNISVLPEGLLSSLVNLTSLTLARNCFQSYPVGGPSQFST
IYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTK
IPEDVCGLVSIEVLILSNNLLKKLPHGIGNLRKLRELDLEENKLESLPNEIAYLKDLQKL
VLTNNQLTTLPRGIGHLTNLTHLGLGENLLQHLPEEIGTLENLEELYLNDNPNLHSLPFE
LALCSKLSIMSIENCPLSHLPPQIVAGGPSFIIQFLKMQGPYRAMV
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtactttaggcaaagacaaagacttgaaagagaaggacccgaagggaggtctg
gcggtagggagagaaagggacaaagaggccaaggcgaccctcgccagcttcggaggaggc
aaggacggaggcaaggagcccaagaccaaagggaaagatgccaaagaaggaaagaaggat
gccgggagcgcgccaccggcagtcgccttctccgtcgacgacaagataaagcggcccaac
ccggcgccgggcacacgcaagaagtcgagcaatgccgaggtgatcaaagagctgaacaag
tgccgtgaggagaactccatgaggcttgacctgtccaagaggtccatccacatgctgccc
acctccatcaaggagctcacccagctggctgaactctacctgtacagcaacaagctgcag
agtctccctggggaggtgggttgtctttcaggcctggtcacgctggcgcttagcgagaac
tctctgaccagcctgccggactctctggactctctgaagaagctgaggatgctggaccta
cgtcacaacaagctgcgggagatcccggcggtggtgtaccgggtgacgtcgctcaccacg
ctgtacctgcgcttcaaccgcatcacagccgtggagagggacatccagaacctggccaag
ctcaccatgttgagcatccgcgagaacaagatcaaacagctgcctgccgagataggggag
ctctgtaacctcatcactctggacgtggcccacaaccagctggaacaccttcccaaggag
attggcaactgcacacagatcaccaacctagacctacagcacaacgagctgctggacctc
cccgaaaccataggtaacttgttgagcatcaaccgcttgggcctccgatataaccgtctc
tccgccataccgcggtcgttagccaagtgccgggagctggaggagctgaacctggagaat
aacaacatctcggtgttaccagagggcctcctctccagcctggtgaacctgacgagcctc
acgctggccaggaactgcttccagtcgtacccggtgggcgggccctctcagttctccacc
atctactccctgaacatggagcacaaccggatcaacaagatccccttcgggatcttctcc
agggccaaggtgctcagcaagctcaacatgaaggacaaccagttgacgtctttgcccctt
gactttggcacgtggaccagcatggtggagctgaacctggcgaccaatcagctgaccaag
atcccggaggacgtctgtggattggtgtccatagaggtgttgattttgtccaacaacctc
ctgaagaagttgccccatggtattgggaacctgagaaagctgcgagagttggatttggaa
gagaacaagttggaatccctccccaatgaaatcgcttaccttaaagatttacagaaactt
gtgttgaccaataatcagctgaccacgttgccaagggggatcggtcacctcaccaatctg
acgcacctgggtctgggggagaacctgctccagcacctgcctgaggagatcggtacactg
gagaacttggaggagctgtacctcaacgacaaccccaacctgcacagcctcccctttgag
ctggcgctgtgcagcaagctgtccatcatgagcatagagaactgtccactcagccacctg
cccccgcagatcgtcgcaggggggccttccttcatcatccagttcctcaagatgcaagga
ccctaccgtgccatggtctaa
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