Osmerus eperlanus (European smelt): 134008570
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Entry
134008570 CDS
T10927
Symbol
slx4
Name
(RefSeq) LOW QUALITY PROTEIN: structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
134008570 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oep04121
]
134008570 (slx4)
03400 DNA repair and recombination proteins [BR:
oep03400
]
134008570 (slx4)
Ubiquitin system [BR:
oep04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
134008570 (slx4)
DNA repair and recombination proteins [BR:
oep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
134008570 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_4
zf-C2H2_6
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
134008570
NCBI-ProteinID:
XP_062303985
LinkDB
All DBs
Position
22:complement(11730705..11739846)
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AA seq
1908 aa
AA seq
DB search
MDCSDQEDFVDLCSKLLKRVRKKVGDPGEQRNAEPQPVITQTRATDLPKRRRRKNDVETA
STSKATAQTDCPTATSEPSLVDGNTAYQKQHLTNGGAELCAGVSGPSVSGADDEAVESGL
GAAQKVVRRMQQFKRRSPQKLSHGEMNQSSETRQHHQSVPTPLPLCQDPQESDQALAVRL
QEELDREAHLPPRGGLAVHLEEGGLFLCQLCHRDLSHMSPAGRTQHTNRCLDESEDSAPP
PLPAIPECPICGKVFKTLKSRSAHLKRCSSHMGVAPAVLLQALQRQAAEAPSDSSASQSV
QTGGSKRKGPKSDPSLPVRKKPRKRASNPDEDTMVALALSSSLLEQEREREVEREREVIP
AVPPGSVAALLRWQAHEGRGGKRRRRNGWAPRPPPLLLVQDPDVALLRLQDRVAALLLXA
PPPPPPTPTLRPSSLPARCSAGGGGGAPLWRKSALQDGGPGCTAEFYTAELREFISPPES
TEPEVASSDPSTSTSHTGPSPSPSTPDSSTQAGAGPAPGGESLPVGSQALADLLELAEEG
MTLTQWGYSSSGKGKESGVAPEADLCMCGFIPDDTHTPCQRDATHTPCQRDATHTPCQRD
ATHTPCQRDATHTPCQRDATRTGRPDLHTHGPQQRAVQTAGQPSVALSRLGSDLGSMVNN
PQLSDVQLQVDDGEVFFAHSFMLYARCPLLAQMVHDSGFGVQEEGVPAARRVLLMEVPGP
AVGVLLHYLYTAHCPLAPTLLPHLQELACRLDLPELQQLCRDHPGPTENQGEGQGEGQAW
EDNPDRELPSGAESGGDQAFMELLRSMWNEDEEDDDGGEDEGGGGDRGEMVTEEEHRGGR
VTLEDGETRGEEEEERVNEEEMEEIYEFAATQRKREEAKESTGEEGGAERKREEAKESTG
EEGGAEEEREEAGRNAGTTKDKEKAARPNVSGTENISSAVPDPDPEDLDRSYSRLFSDSW
GVYEDDDPPPQPPRSQPPWCPPHCSSPSPRAPPSVSQPPRPRAGRRQSETPCLHSSVSEV
IDLSVSPPAGWPCIPMPGLSPGEMSPAGARRGPSEGVGAGEVAEEERGGGPDHVAVSQER
VGSGEERLSPQRTAQGPRSAGLPRSPRPPPPPPPRASREPELIVLSDSSEEVEVGPPPGT
PPSPPPPPPPHPTQSQQDFTQIRPRAEPKSPGLDGKVKSACVRGPSVSSPPDGRLDGPGP
DPADQSPMMDFSPEVSWLIPATPLQPRTSTTSSTQTQSSMRRTRLFPKTCSSSSSSSSSR
SSNLQTSIDPPQASTRPAQTEGLISRVPSRESAPQVPSLALDLSPKRHSAGSRDTADDSS
QVSAAPSSHPGRSAPPSLTPSLPPPEPSTKATPLHSLPQPHSSTPLHPDPPEPRALPSAS
PLLCGGGERHAEWRRGGAHTQSPERTGLGTLRLSLSDSPSSPRMGSPSRGPDQRRPPAES
GDASSSGRRRMGTEGGKETRTRHAEGERREEERRLTSCGGEEEEEGMEVEEEVSGGYGFH
QSFMAMDEPPMAFDDSWGLNAGEGQREQEVCFSLRMDSTGAQSYITPPPPSPQMIPPSPS
PSPPPMTHVHPASPSTSSTARTLAIRPSSSCSPPPSTHAGPQGEPERGASLLGSKIWSDW
EEEEEEAVPLSQRVSTVALAQRVDQLKTPVASRRRGQLPLVAITPLPSYSDMDTPDLKNK
LNRFGVRPLPKRQMILKLKEIHQYTHQVVSSESDDEAPSLGRAPQARPQSSSTASRRPAS
SGGFKQPGAPPAASPVKQGRREEQEALSASQGSSTSSTTASEDSERSNPELCPLSDDGGS
DGDITPSQASSLLQDRLQAARRFILSDPELYGRVLQYQPLGLALLQARLKEAGITLGTAK
LMDFLDANCITFTTAKPGQGSRQRRRGGGVGRGRGGRRKKGVPPTVME
NT seq
5727 nt
NT seq
+upstream
nt +downstream
nt
atggactgttcagatcaagaagacttcgttgacctctgctccaagctgctaaagcgagta
cgtaaaaaggtgggtgaccccggagagcagaggaacgcagagccccagcccgtcatcaca
cagaccagagccacagacctccccaagagaaggcggaggaagaacgatgtcgagacggca
agcacaagcaaggccaccgcgcaaaccgattgcccaaccgctacttccgaacctagcctg
gttgacgggaacacagcatatcaaaagcaacaccttactaacggcggagcggagctctgc
gctggagtaagcggtccatcggtgtccggtgcggatgacgaggccgttgagagtgggctg
ggggctgcacagaaggtggttaggagaatgcagcagttcaagagacgcagtcctcagaaa
ctgagccacggtgagatgaaccagtcttccgagaccagacagcatcaccaaagtgttcct
actcccctgcctctatgtcaagacccccaggagagcgaccaggccctggctgtgaggctg
caggaggaactggacagggaggcacatctcccccccagaggaggcctggcggtacacctg
gaggagggaggcctgttcctctgtcagctctgtcaccgtgacctgtcccacatgagcccg
gcaggacgcacacagcacaccaacaggtgtctggatgagagtgaggacagtgccccgccc
cctctccccgccatcccagaatgccctatctgcgggaaggtcttcaagaccctgaagagt
cgctccgcccacctgaagcgttgctcctcccacatgggcgtggccccggccgtgcttctg
caggccctgcagagacaggctgccgaggcgccgagtgacagttcagccagccaatcagtg
cagactgggggctccaagaggaaaggccccaagtcagaccccagcctcccagtgaggaag
aagcccaggaagagagcctccaacccagatgaggacaccatggtggccctggccctctcc
tcctccctcctggagcaggagagggagagggaggtggagagggaaagggaggtgattcct
gctgtacctcctggttctgtggctgctctgttgaggtggcaagcccacgaaggacgcggg
ggcaagaggaggaggaggaacggctgggccccccgcccccctcccctcctcctggtccag
gaccccgacgtggccctgctgaggctccaggacagggtggccgccctcctgctcnncgcg
ccccctcccccccccccgacccccaccctgcgccccagctccctgcccgcccggtgctcg
gcagggggcggcggaggcgcccccctgtggaggaagagcgccctgcaggacggaggaccc
ggctgcacggcggagttctacactgctgagctgagagagttcatctctccgcccgagtcg
acagagcctgaggtggccagctcggatccttccacctccacctcccatacaggcccctct
ccttccccctccaccccagacagcagcacccaggctggggcggggccagcaccaggcggg
gagtccctccctgtgggcagccaggccctggctgacctactggaactggcagaggagggc
atgaccctcacccagtgggggtactccagctctgggaaagggaaagagagcggcgtcgcc
cccgaggctgacctgtgcatgtgtggcttcatccctgacgacacacacacaccctgtcag
agggacgccacacacacaccctgtcagagggacgccacacacacaccctgtcagagggac
gccacacacacaccctgtcagagggacgccacacacacaccctgtcagagggacgccaca
cgcactggaagacccgacctgcacacccacgggcctcagcaaagggccgtccagacggcg
ggccaaccttcggtggcgctgtccagactgggctcagacctgggcagcatggtgaacaac
ccccagctcagtgacgtgcagctccaggtggacgatggcgaggtgttcttcgcccattcg
ttcatgctgtacgcacgctgccccctgctggcccagatggtccatgacagtgggttcggg
gtgcaggaggagggcgtgccggcggcccggcgggtgcttctgatggaggtgcccggcccg
gccgtgggcgtcctgctccactacctctacaccgcccactgccccctcgcacccaccctg
ctgccccacctccaggagctggcctgcaggttggacctgccggagctacagcagctgtgt
cgggatcacccaggacccacagagaaccagggagaggggcagggagaggggcaggcctgg
gaagacaacccagaccgggagcttccgtccggggcggagagcggcggggaccaggccttc
atggagctcctccgctccatgtggaacgaagacgaggaggatgacgacggtggtgaggac
gaaggggggggtggagacagaggagagatggtgacggaggaggagcacagaggggggcgc
gtgactctggaggacggcgagacgcgcggcgaagaagaagaagaaagggtgaacgaggag
gagatggaggagatctacgagtttgccgccacgcagagaaagagggaggaggcgaaggag
agcacaggagaagaggggggggcagagagaaagagggaggaggcgaaggagagcacagga
gaagaggggggggcagaggaagagagggaggaagcgggaaggaacgcaggaacaacaaag
gacaaggagaaagcagcccgaccgaacgtttcgggaacggagaatatctcatccgcggtg
ccagatcccgaccccgaagacctcgacaggagctacagccgcctcttctccgactcctgg
ggggtctacgaagacgacgacccccctcctcagcccccgaggtcccaacccccttggtgc
ccccctcattgctcctccccctctcccagagccccaccctccgtctcccagcctcccagg
cccagagccgggcgcaggcagtcagagactccctgtctccactcctccgtgagcgaggtc
atagacctgtccgtcagtcctccggccggctggccctgcatccccatgcccgggctgtcc
ccaggggagatgagccccgctggggcgaggagaggcccctctgagggggtgggagctgga
gaggtcgcagaagaagaaagaggaggagggccagatcatgtggctgtatcccaggagagg
gttggttctggtgaagagaggctgtctccgcagagaacggcgcagggccctcgcagtgca
ggcctgcctcgctcgccccgtcctcctcctcctcctcctcccagagccagcagagaacca
gagttgatagttctgtctgactcgagtgaggaggtggaggtcggcccccccccggggacc
ccccccagccccccccctccacctcctcctcaccccacccagagccagcaggacttcacc
cagatcagacccagagcggaacccaagagccccggtttggacggaaaggtgaaaagcgct
tgcgtgcgtggccccagcgtgtcgtcaccccctgacgggcgtctggacgggcctggtcct
gatcctgcggaccagagccccatgatggacttctctccagaggtgtcctggctgatcccg
gccactcctctccagcccaggacgagcaccaccagctccacccagacccagagcagcatg
cgtcgcactcgactcttccccaaaacctgctcatcttcatcctcatcatcatcttccagg
agcagtaacctccagacctccatcgacccgccccaagcctccacgcgccctgcccagaca
gaaggcctcatctccagggtgccgtcccgggaatctgccccccaagttcccagcctggct
cttgatctctcacctaagagacacagcgcgggcagtcgggacacagcggacgactcctcc
caagtatctgcggccccctcctcccaccccgggcggtctgctccccccagcctgaccccc
tctctccccccaccagagccctccaccaaggcaacccctctccacagcctcccccagcct
cacagcagcactcccctgcacccggatccacccgagccccgtgctctgccctcggcctcc
cctctactctgtgggggcggcgagagacatgcagagtggcgacgagggggggcgcacacc
cagagccctgagaggacggggctggggaccctgcgcctctccctctccgactccccctcc
tccccccgtatggggtctcccagcaggggccccgaccaacgcagaccccccgctgagtcg
ggcgatgctagcagttcggggaggagaaggatgggaacggagggagggaaggagacgagg
acaagacacgcagaaggggaaaggagagaggaggagaggaggttaaccagctgtggagga
gaggaggaggaagaagggatggaggtggaagaggaggtgtctgggggctacggcttccat
caaagcttcatggcgatggacgagcccccgatggcgttcgacgactcgtgggggctgaac
gccggggaggggcagagggaacaggaggtgtgtttcagcctgagaatggacagcacggga
gcccagtcctacatcacccctcctcctccatcaccccaaatgatccctccgtccccctct
ccctctcctccgcccatgactcacgtccacccagcctccccttctacctcaagcaccgcc
cgcaccctcgccatccgtccttcctcctcctgttctcctccaccctccacccacgccggc
ccccagggcgaacccgagcgaggagccagcctcctgggctccaagatctggtctgactgg
gaggaggaggaggaagaggctgtccctctctcccagagggtcagcactgtcgccctggct
cagagagtggaccagctcaaaaccccagtggcgtcccgtaggagaggccagctccccctg
gtggccatcaccccgctgcccagctactctgacatggacactcctgacctcaagaacaag
ctcaacaggtttggggtgcgtcccctccccaagcgccagatgatcctaaagctgaaggag
atccaccagtacacccatcaggtggtcagctccgagtccgacgacgaggctccttctctg
ggcagggcccctcaggcgaggccccagtctagttccacggcctccagaaggccagcgtcc
tcgggggggtttaagcagcctggggcgccccccgctgcctctcctgtgaagcagggcagg
agggaggaacaggaggctctctctgcatcgcaaggctcctccacatcctccactactgcc
agtgaagactcagagaggtcgaacccagagctgtgccctctctctgacgacggcggctcc
gacggcgacatcactccctcgcaggcatcctccctcctccaggaccggctccaggcggcg
cgccgcttcatcctgtccgacccagagctgtacggccgggtcctgcagtaccagccgctg
ggcctggccctgctccaggcccgcctcaaggaggccggcatcacgctgggcactgccaag
ctcatggacttcctggacgccaactgcatcaccttcaccaccgccaagccgggccagggc
agcaggcagcggagacgaggagggggggtggggagaggaagaggagggaggagaaagaaa
ggcgtaccgcccacagtgatggagtga
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integrated database retrieval system
