Osmerus eperlanus (European smelt): 134008617
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Entry
134008617 CDS
T10927
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
oep01001
]
134008617 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
oep04054
]
134008617 (ciita)
Enzymes [BR:
oep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
134008617 (ciita)
Protein kinases [BR:
oep01001
]
Serine/threonine kinases: Other
TAF1 family
134008617 (ciita)
Pattern recognition receptors [BR:
oep04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
134008617 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
RsgA_GTPase
AAA_16
NLRC4_HD2
nSTAND3
NPHP3_N
LRR_Zer-1
VapE-like_dom
ABC_tran
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
134008617
NCBI-ProteinID:
XP_062304066
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All DBs
Position
2:5533868..5548145
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AA seq
1387 aa
AA seq
DB search
MAPFEEVLGLVRLALSCSSPWEIKAFLEALVELQVISRHYSSNLRSSLTPGSSRRQSGAA
LEWSQPGEEGHLDLLWSRLEPERKLSVGSYLPQQQDLERGTDRAEGVMENDNWRTGVEEQ
SQDQGRMEETWMEEQNGTEEMEEVIRRIALPLWQNWERGQRVLLPLLAWITSDTPTDRLT
VSMTTDKVTHNHKEEYEEEEQEVGETGTPVTHNRMQEVNEDLPPSLLLDYGEQFLKDLDT
IDIHSLLDSNGDFTDSFLDLLEYQGDGDGNLATAEPPPDVSEKKQKQSRRRRRGQGSEDS
PEMTVDSLSKRRRREGAGMEAKRKPRSRKLQEHTLPRESAGPPPAGVMDLPTSPLTVLQF
SPSLHPSTHSPIQLVPLLGSPMLGHSPPLLSLLLSMSTTPPTYILVPAPSQVTPPQVVPL
SPHDGAVAPDHMGSSPQGSLSDCTSKALSPASASPLSPNTGVSQRKGSPPSTSSAAMSGC
VKDYLQQAKAHMRETCQEMEAGLRLDSHYVDLQLVPKQILSNGSKSPDKDLVVMRDVEQN
LGWQGSSQMFQNTEESKAKRYIVLLGNSGMGKSTFIKKLSLDWSNGSLPQFDFMFVLDGK
ALALTEQTYSLQSLLLRLSSSAPHCHAPEAVFTRVLSSPKRVLLVFDGFDRSRDYEGLLL
SRAEDFQGRSRAQSYSVRQLYSGLLQRRLLASCSLLLCVRDRGVGSQLLRRADCLLELRG
FSSSDTQAYLDLYFPEPGPRAIAVEQLQKHRYLLSLCWNPGLCRAVCLVLEHHRGSEPLP
SSLTELWSRVLRVKLRNKRTQNGKLAKTGTLTHSVSHSNEDIHTPRQINGNTRINTRSHT
QIQTLMEAKEIGNGSGKEEEERKERKMEGELLSQMSSSAWEGLKGHSSVLSLDHTVSDRL
RRLGLRCGLVHSHSLRVSEGDKGERQRGLEPGGDEQVEERNRGRRGTEGITGDHILSWSH
SFLRSFLGGAHLTLSRAVSDRSLLFQAVPSQPRGRRRTQGEGLDLAQRFAIGLLFRNKEE
LQDLLAVDTGVMDIVLAKRSSMKAHLEGLNHGDLSPAHLLEVCHYVHETGDARLARHLVK
SLPEDLSFDKVPLHPPDAYVVWNLLKNHGTQRRKFCLRLEDTGIRICGLRALVSLRNVSS
YRACIADTTALWEELENNGEKELLEEAVNKLVINPFRAGQVCHIDHLAQLVHIHTHRRLP
GSQSVSVLAEGIPAVRDLYKLEYDLGPVYGPLALPKLLEVLPALHSLQHLDLENSKMGDS
GAEDLAKIITSLSSLQILNLSQNCIGDQGAERLAASLCTLPSLHCLSLYHNVISDGGAQS
LAAVLHQMASLTDLDVKYNKFTDVGAQHLACSLRKCPWIKSLGMWNEYIPYREFERLQEQ
DSRIHSL
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atggccccgtttgaggaggtgctgggcttggtgcggctggctctgagctgctcttctccc
tgggagatcaaggccttcctggaggccctggtggagctccaggtgatctccaggcactat
agcagcaacctgaggtccagcctgacccctggatcaagccgtcgccagagcggagcagcg
ctggagtggagccagcccggagaggaaggccatctcgacctcctgtggagcaggctggaa
ccagagaggaagctgagcgttggttcatacctgccacaacagcaggacctggagagaggc
acggacagggcggagggagtgatggagaatgacaactggaggactggggtggaggagcaa
agccaggaccagggaaggatggaggagacgtggatggaagagcagaatgggactgaggag
atggaggaggttattcgaaggatagctcttcctctgtggcagaactgggagagaggccag
agggtcttactgcccctactggcctggataacctctgacacccccactgataggctcact
gtgtctatgaccacagacaaggttacacacaaccacaaggaggaatatgaagaggaggag
caagaggttggagagacaggaacacctgtcacccataacaggatgcaggaagtaaatgag
gaccttcctccatccctcttgctggactatggggagcagtttttgaaagacctggacacc
attgacatccattcacttcttgatagcaatggtgacttcactgactccttcctggacctc
ctggagtaccagggcgatggtgatgggaacttggcaaccgccgaacccccacccgatgta
tcagagaagaaacagaaacagagcagacgaagaagaaggggccaaggctctgaagacagt
ccagagatgacagtagactcactctcaaaacgtaggagaagagaaggtgctggcatggag
gccaagaggaagccaaggagcaggaagttacaagaacacacacttcccagggagagcgct
ggtcctcccccagctggagtcatggatcttcctacctctcctctcacggttcttcagttc
agtccatccctccatccttctacccactcccctatccagctggttcccctccttgggtcc
cctatgttgggtcactctcctcccctcctcagcttgctactctccatgtccaccacccca
cccacatacatactggtccctgctccctcccaagtcaccccaccccaagtcgtccctctc
tccccacatgatggtgccgtagctccagaccacatgggatcgtcacctcaaggctctctt
tcagactgcacaagcaaagccttgagtcctgcctctgcctcccccctgtcccccaacaca
ggtgtgtctcaacgcaagggaagtccaccctctacatcctctgctgcgatgtctgggtgt
gtgaaggactacctacagcaagccaaagctcacatgagggaaacttgtcaggagatggag
gcgggccttcgtctggactcccactatgtggacttgcaattggtcccgaagcagatcctg
agtaatggcagcaaatccccagacaaggacctggttgtcatgagagacgtggagcagaac
cttggctggcaggggagtagtcagatgttccagaacactgaggaatccaaagccaagcgt
tatattgtgttgctaggcaactctggcatgggcaaaagcaccttcatcaagaagctcagc
ctggattggtcaaacggatccttgcctcagtttgacttcatgttcgtattggacgggaag
gctctagcgctgacagagcagacctacagcctgcagtccctcctcttacgcctgtcctcc
tccgcccctcactgccacgcccccgaggctgtcttcacccgggtcctctcttcgccgaag
cgcgtgctgctggtctttgacggctttgacaggtccagggactacgagggtctgctgctg
tcgcgagctgaggacttccagggcaggagcagggcacagagctacagcgtgaggcagctg
tactcagggctgctccagaggaggctgctggccagctgctccctgctcctctgtgtccgg
gaccgtggggtgggcagccagctgctgcgtcgggccgactgcctcctggagctccgtggc
ttctcctcctctgacacccaggcctacctggacctgtacttccctgaaccaggcccacgg
gccatcgctgtggagcagctgcagaagcacaggtacctcctcagcctctgctggaaccca
gggctctgcagggccgtgtgtctggttctggaacaccatcgcggatcagaaccactacct
tcctccctcacggagctgtggagcagagtgctccgggtgaagctgaggaacaaacgcacg
cagaacggcaagctggcaaaaacaggaactctcactcactcagtcagccatagcaacgaa
gacatacatacgcccagacagattaacgggaacactcgcataaacacacgctctcacacc
caaatccaaactctaatggaagcaaaggaaataggtaatggctccggaaaagaggaagag
gagaggaaggagagaaaaatggagggggagcttctgtcccaaatgagctcatcagcctgg
gaggggcttaaaggtcactcctccgtcctctctctggatcataccgtctctgacagactc
cggaggcttggactaagatgtggactagtccactctcactctctgagggtgagtgaaggg
gataaaggagagagacagagaggtctagagccaggaggggatgagcaagtagaggagagg
aacagagggagaagaggcactgaaggcatcaccggtgaccacatcctgtcctggtcccac
tctttcctgcgcagcttcctgggcggggctcacctgaccctctccagggcagtgtccgac
cgcagcttactgtttcaggcagtcccctcacagccaagggggcggagacggacgcagggg
gaggggctagacctggcgcaacggtttgccatcggtctgctgttccgaaacaaggaggag
ttgcaggacctgcttgctgtggatacaggggtcatggatatcgtgcttgccaaaaggagc
tctatgaaggcgcacctggagggacttaaccatggtgacctgagccccgcccacctcctg
gaagtatgtcactacgtgcatgagactggcgacgcacggctggccagacacctggtgaag
agcctccctgaggacctgtccttcgacaaagttccgctgcaccctcccgatgcctacgta
gtgtggaacctgctgaagaaccatggtactcaaaggagaaagttctgtctgcggctggag
gacacaggaatcaggatctgtggactccgagctctggtgagcctccgtaacgtcagttcc
tacagggcctgcattgctgacactacagctctgtgggaggagctggagaacaatggggag
aaggagcttttagaagaggctgtgaacaaacttgtcatcaaccctttcagagctgggcag
gtgtgccacattgaccatctggcccaactggtccatatacacacacataggagactacct
gggagccaatcagtgtctgtcttggcggagggaataccagccgtcagagacctctacaag
ctagagtatgacctgggtccggtgtatggccccctggccctccctaagctcctggaggtc
ctgcctgctctccacagtctgcagcatctggatctcgagaacagtaagatgggggactcg
ggagcagaagacttggctaagatcattacatccctctcttccttacagatactcaatctc
tctcagaactgtataggagaccagggagcagagagactggcagcctccctgtgcaccctg
ccctccctgcactgtctcagtctgtaccataacgtgatctctgacggtggggcacagagt
ctggctgcagtccttcatcagatggcctccctcacagacctggatgtgaagtataacaag
ttcactgatgtgggagcgcagcacctggcctgcagtctgaggaagtgtccttggattaag
agtctgggtatgtggaacgaatatattccataccgggagtttgaacgtctgcaagagcaa
gactccaggatccattcactctag
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integrated database retrieval system
