Osmerus eperlanus (European smelt): 134008822
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Entry
134008822 CDS
T10927
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134008822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oep03041
]
134008822
03009 Ribosome biogenesis [BR:
oep03009
]
134008822
Enzymes [BR:
oep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134008822
Spliceosome [BR:
oep03041
]
Complex A
U1 snRNP components
U1 related factors
134008822
Complex B
134008822
Ribosome biogenesis [BR:
oep03009
]
Eukaryotic type
Pre-60S particles
Helicases
134008822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
134008822
NCBI-ProteinID:
XP_062304353
LinkDB
All DBs
Position
22:9388611..9394270
Genome browser
AA seq
624 aa
AA seq
DB search
MPGFSDRDRGSRDRGYGGPPRFGGGGNRGGSSQGKFGNPGERLRKKHWNLDELPKFQKNF
YQEHPEVTRRQPQEVELFRRTKEVTVKGRDCPKPIIKFNEAQFPSYVMDVINKLNWSEPT
PIQSQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPTRE
LAQQVQQVAAEYGRASRLKTTCIYGGAPKGPQLRDLERGVEICIATPGRLIDFLEAGKTN
LRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYV
QINVGALQLSANHNILQIVDVCNDMEKEDKLLRLLEEIMSEKENKTIIFVETKRRCDEIT
RRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYDY
PNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQATDLISVLREANQAINPKLLQMADDR
GGRGGRGGRGGYKDDRRDRYSGGRRDFGGGYRDSDRGFASGPKSAFGTKTQNGSGYGGNS
GSSSSSYGNSYGGNGQASFGVTSQVGAFGGQSFQAPPFAGAQVASQNGMSHAQFPFTAQP
PQQTQQPPPPPPMVPYPMPPPFPL
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttctgacagagaccgtggaagtcgagacagagggtatggtggcccaccc
cgttttggcggtggagggaatagaggcggatcttcacaaggaaagtttggtaaccctggt
gaaaggcttcgcaaaaaacactggaaccttgatgaacttcctaagttccagaagaacttc
tatcaggagcacccagaagtcacccgcagacagcctcaagaggttgagctattccgcaga
accaaagaagtcacagtgaagggcagggattgccccaaacccattataaaattcaacgag
gcccagtttccaagttatgtgatggatgtgatcaacaagttaaactggtctgagccaacc
cctattcagtcccaggggtggcctctggcgttgagtggcaaagacatggttggcattgct
cagacagggtctggcaaaactcttgcatacctgctgcctgcaatcgtgcacatccaacac
cagccattcctggagcatggggatggacctatttgcctggttttggctcccacccgcgag
ttggcccagcaggtgcagcaggtggctgcagagtacggcagggcgtctcgcctcaagacc
acgtgcatctacggaggagcccccaaaggcccccagctcagagacctggagagaggtgtg
gagatctgcatcgccacccctgggcgtctcatcgacttcctggaggcggggaagaccaac
ctgcgccgctgcacctacctggtcctggacgaggccgaccgcatgctggacatgggcttc
gagccccagatccgcaagatcgtggaccagatcaggcccgacaggcagaccctgatgtgg
agcgccacctggcccaaggaggtgcgccagctggcggaggacttcctgaaggagtacgtg
cagatcaacgtgggcgccctgcagctgagcgccaaccacaacatcctgcagatcgtggac
gtctgcaacgacatggagaaggaggacaaacttctccgactcctggaggagatcatgagc
gagaaggagaacaagaccatcatctttgtggagaccaagaggcgttgtgacgagatcacc
agaaggatgagacgagacgggtggccagccatgggcattcatggagacaagagccaacag
gagagggattgggttctcaatgagttcaagtacggcaaggcccccatcttgattgcgaca
gacgtggcctcccgcggcctagatgtggaggatgtgaaatttgtcatcaattatgactac
cctaactcctctgaggactatatccaccgcattggacgcacggcccgcagtcaaaaaacg
ggcacggcctacaccttcttcacccccaacaacatgaaacaggccaccgacctgatctct
gtgctccgcgaggccaaccaggccatcaaccccaagctgctccagatggcggacgacaga
ggaggtcgtggaggacgggggggaagaggtggctacaaggatgaccggcgggataggtat
tccgggggaaggagggatttcggtggtggttacagggacagcgatagggggttcgctagt
ggaccaaaaagtgcgttcggcaccaaaacccaaaatggcagcggctatgggggtaacagc
ggtagctctagcagtagctacggcaacagctacggcggcaacggacaggctagctttggc
gtcaccagtcaggtgggtgcttttggcgggcagagcttccaggctccgccctttgctggc
gctcaggtggcctcccagaacggaatgagccacgcccagttccccttcacagctcagccg
ccgcaacagacccaacaaccaccacccccaccacccatggtaccttaccccatgccaccc
cccttcccactgtag
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