Osmerus eperlanus (European smelt): 134009139
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Entry
134009139 CDS
T10927
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03015
mRNA surveillance pathway
oep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134009139
09123 Folding, sorting and degradation
03018 RNA degradation
134009139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oep03019
]
134009139
03041 Spliceosome [BR:
oep03041
]
134009139
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
134009139
mRNA cycle factors
Stress granule specific factors
134009139
Spliceosome [BR:
oep03041
]
Complex C
Other components
Complex C specific factors
134009139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_5
RRM_occluded
RRM_3
RRM_DEAH11
DUF7287
Motif
Other DBs
NCBI-GeneID:
134009139
NCBI-ProteinID:
XP_062304847
LinkDB
All DBs
Position
22:2622595..2634255
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AA seq
472 aa
AA seq
DB search
MNQRPSSRPKASLYVGDIHQHVTEAMLYNHFSPAGTIHSIRVCRDRVNKRSLGYAYVNFK
RSVDAEHALDFLNFKLTDGSPIRVTWAHQRDPTMTKSGVGKVFIKNLDTSIDNENLYDTF
SGFGKILSSKIACGNNGSKGYGFVQFETAEAAEKSIERLDGMLFNDRKAFVGRFKSRKER
QAERFGSCAKFTNIYIKNFGQDVDEQKLTEVFSKYGKITSVCVMKDENGKSRGFGFVNFE
RHEDAQKAVDDMKGMQISGKLIYVGRAQKRLERQSKLKRWFQQNQARMTCPSKQLFTNIY
IKNFGQDVDEQKLTEVFSKYGKITSVCVMKDENGKSRGFGFVNFERHEDAQKAVDDMKGM
QISGKLIYVGRAQKRLERQSKLKRWFQQNQARMTCPSKQLQHMSAQIHSKTKAQVKVQTL
TQENAQVETQPKDCTVGEKTYGGILHAENITSMKAAASAVKNGDADQFPTTL
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagcgtccttctagtcgtccaaaagcttccttgtatgttggagacatacaccaa
catgttaccgaggcaatgctctacaaccacttcagtcccgccgggaccatccactctatc
cgcgtctgcagagacagggtcaacaagcgctctctgggttatgcctatgtcaacttcaag
aggtcagtggatgccgagcacgccttagatttcttgaattttaaactgactgatggctct
ccgattcgtgtaacttgggcccaccagcgcgacccgaccatgacaaagagcggtgtgggt
aaagtctttattaagaacctggacacgtcaatagataacgaaaatctatacgacaccttc
tctggcttcggcaaaatcttgtcgagcaagattgcatgtggtaacaatggctcaaagggc
tatggttttgttcaatttgagaccgcggaggctgccgagaaatctatagaaagattggac
ggtatgctgtttaatgacagaaaagcatttgtgggccgcttcaaatctcgcaaggagcgc
caagctgagcgatttggttcatgcgcaaagttcaccaatatctacatcaagaactttgga
caggatgtggatgagcagaagctgacagaggtgttcagcaagtatggaaagatcacgagc
gtctgtgtcatgaaggatgagaatggcaagtcccgagggttcggctttgtgaactttgag
aggcacgaggatgcgcaaaaagctgtggatgacatgaaaggaatgcaaattagcggcaag
ctgatctatgttggccgcgcccagaagaggttagagcgtcagtccaagctcaagcgttgg
ttccagcagaaccaggctcgcatgacatgcccttctaagcagctgttcaccaatatctac
atcaagaactttggacaggatgtggatgagcagaagctgacagaggtgttcagcaagtat
ggaaagatcacgagcgtctgtgtcatgaaggatgagaatggcaagtcccgagggttcggc
tttgtgaactttgagaggcacgaggatgcgcaaaaagctgtggatgacatgaaaggaatg
caaattagcggcaagctgatctatgttggccgcgcccagaagaggttagagcgtcagtcc
aagctcaagcgttggttccagcagaaccaggctcgcatgacatgcccttctaagcagctg
cagcacatgagtgcccagatccactccaagaccaaagcccaggtcaaggtccagaccctg
acccaggaaaatgcccaggtcgagacccagcctaaggattgcactgtgggtgagaagacc
tatggtggaatcttacatgcagagaacatcacctccatgaaagctgctgcatctgcagtg
aagaatggagatgctgatcagtttcccactactctgtaa
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integrated database retrieval system
