KEGG   Osmerus eperlanus (European smelt): 134009230
Entry
134009230         CDS       T10927                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
oep  Osmerus eperlanus (European smelt)
Pathway
oep03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:oep00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    134009230 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oep03021]
    134009230 (taf5l)
   03036 Chromosome and associated proteins [BR:oep03036]
    134009230 (taf5l)
Transcription machinery [BR:oep03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     134009230 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     134009230 (taf5l)
Chromosome and associated proteins [BR:oep03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     134009230 (taf5l)
    STAGA complex
     134009230 (taf5l)
    TFTC complex
     134009230 (taf5l)
    SAGA complex
     134009230 (taf5l)
    SLIK complex
     134009230 (taf5l)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_TEP1_2nd TFIID_NTD2 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_TEP1_C WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_Aladin ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_RIG_2nd Beta-prop_WDR41 Tricorn_2nd RMC1_N Beta-prop_EIPR1 Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_VPS8 Beta-prop_WDR19_1st Beta-prop_DCAF4 PROPPIN PEP5_VPS11_N WD_LRWD1 DUF7165 Nbas_N Beta-prop_NWD2_C
Other DBs
NCBI-GeneID: 134009230
NCBI-ProteinID: XP_062304945
LinkDB
Position
22:complement(6833184..6837550)
AA seq 601 aa
MKRVRTEQIQYTVAQYLKRRQYVDTEGALKGAKLSQSAEEMAANLTVQTESGCANIVSAA
PCQSDPQQYEVQFSRLRNFLSEAEVSWGKEVSCVLYPLFVYLHLDMVRCGLKGTVDSFYS
RFHGMFLQDAEQRATVEQLRHVLTSQDVSANPKLCAFLDHKYVVHLTEPAYSYLLRYLQS
EDNSALCRALSTHLQVEVTTSPRTDYQLYGTGGGAATAPNSTSSWAGVDGAEGGEGVEVP
AGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFHHTEQLLNAAEVSADSRLLAGGFDT
SAVKLWSLRARKLKAKPHRVDVSHVRLACDMLEEEADEEDGSGSEIKTLRGHSGPVFRTA
FLTDSSGLLTCSEDTSIRYWDLGSFTNTVLYQGHAYPVWDLDVSPCSLYFASGSHDRTAR
LWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVRLFTGHRG
PVLALAFSPNGKYLASAGEDQRVKLWDLASGALYKDLRGHSDSVTSLSFSPDSSLVASSS
TDNSVRVWDIRSSHGGGAPSDGSSGEMVGLYTGHTSNVLNVQFMACNLLMVTGTAQEKQE
P
NT seq 1806 nt   +upstreamnt  +downstreamnt
atgaagcgggttcgaactgagcagatccagtacaccgtggctcagtacctgaagcggagg
cagtatgtggacactgagggtgccctgaagggggcgaaactgtcccaatctgctgaagag
atggctgccaacctgacagtacagacagagtcaggatgtgccaacattgtgtctgccgcc
ccttgtcagtcggacccccaacagtacgaggttcagttctctagactacggaactttctc
tcagaagcagaggtatcttggggtaaggaggtgagctgcgtcctctacccgctcttcgtc
tacctccacctggacatggtgcgctgcggcctgaaggggacggtagacagcttttacagc
cgcttccacggcatgttcctccaggacgccgagcagcgcgccaccgtcgagcagctccgc
cacgtgctcacctcgcaggacgtgtcggccaaccccaagctctgcgccttcctcgaccac
aagtacgtggtgcacctgacggagccggcctacagctacctgctgcgctacctgcagagc
gaggacaacagcgccctctgcagggccctgagcactcacctgcaggtggaggtcactacc
tcgccgcgcacagactaccagctctacgggacgggcggcggggccgccacggcccccaac
tccacctcgtcctgggcgggcgtggatggggcggagggaggggagggcgtggaggtgcct
gcagggatcccgcagagcgaagcggctctggaggcgctgcaggactgcattaagaaggtg
cgcgaggggccgccgtcgctcaccaccgtgtgcttctacgccttccaccacacggagcag
ctgctgaacgcggcggaggtgtcggccgacagcaggctgctggccggcggcttcgacacc
tcggccgtcaagctgtggagcctgagggcccggaagctgaaggccaagccgcaccgggtc
gacgtgtcgcacgtccgtctggcctgcgacatgctggaggaggaggcggatgaggaagac
ggctcgggaagcgagatcaagaccctgcgaggccacagcggccccgtgttccgcacagcc
ttcctcacggacagctcgggcctgctgacctgctccgaggacacgtccatccgctactgg
gacctcggcagcttcaccaacacggtgctctaccagggccacgcctaccccgtgtgggac
ctggacgtcagcccctgcagcctgtacttcgccagcggctcccacgaccggactgcgcgc
ctctggaccttctcgcgcacctaccccctgcggctgtacgccggccacttggccgacgtg
gactgcgtcaagttccaccccaactccaactacctggccacaggctccaccgacaagacc
gtccgcctgtggagcacccagcagggggcgtcggtgcgcctcttcaccggccaccgcggc
ccggtgttggcactggccttctctcccaacgggaagtacctggcgtcggccggcgaggac
cagagggtgaagctgtgggatttggcctcgggggccctgtacaaggacctgcgagggcac
tcggacagcgtgaccagcctgtccttcagccccgacagcagcctggtggcgtcctcctcc
acggacaactcggtcagggtgtgggacatccgcagctcgcacggcgggggggcgccgtcc
gacggctcgtccggcgagatggtggggctctacacgggtcacaccagcaacgtgctcaac
gtccagttcatggcctgcaatctcctcatggtgaccgggaccgcgcaggagaaacaggaa
ccgtag

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