Osmerus eperlanus (European smelt): 134009230
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Entry
134009230 CDS
T10927
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
134009230 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oep03021
]
134009230 (taf5l)
03036 Chromosome and associated proteins [BR:
oep03036
]
134009230 (taf5l)
Transcription machinery [BR:
oep03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
134009230 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
134009230 (taf5l)
Chromosome and associated proteins [BR:
oep03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
134009230 (taf5l)
STAGA complex
134009230 (taf5l)
TFTC complex
134009230 (taf5l)
SAGA complex
134009230 (taf5l)
SLIK complex
134009230 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
TFIID_NTD2
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
RMC1_N
Beta-prop_EIPR1
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_DCAF4
PROPPIN
PEP5_VPS11_N
Ge1_WD40
WD_LRWD1
DUF7165
Nbas_N
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
134009230
NCBI-ProteinID:
XP_062304945
LinkDB
All DBs
Position
22:complement(6833184..6837550)
Genome browser
AA seq
601 aa
AA seq
DB search
MKRVRTEQIQYTVAQYLKRRQYVDTEGALKGAKLSQSAEEMAANLTVQTESGCANIVSAA
PCQSDPQQYEVQFSRLRNFLSEAEVSWGKEVSCVLYPLFVYLHLDMVRCGLKGTVDSFYS
RFHGMFLQDAEQRATVEQLRHVLTSQDVSANPKLCAFLDHKYVVHLTEPAYSYLLRYLQS
EDNSALCRALSTHLQVEVTTSPRTDYQLYGTGGGAATAPNSTSSWAGVDGAEGGEGVEVP
AGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFHHTEQLLNAAEVSADSRLLAGGFDT
SAVKLWSLRARKLKAKPHRVDVSHVRLACDMLEEEADEEDGSGSEIKTLRGHSGPVFRTA
FLTDSSGLLTCSEDTSIRYWDLGSFTNTVLYQGHAYPVWDLDVSPCSLYFASGSHDRTAR
LWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVRLFTGHRG
PVLALAFSPNGKYLASAGEDQRVKLWDLASGALYKDLRGHSDSVTSLSFSPDSSLVASSS
TDNSVRVWDIRSSHGGGAPSDGSSGEMVGLYTGHTSNVLNVQFMACNLLMVTGTAQEKQE
P
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgggttcgaactgagcagatccagtacaccgtggctcagtacctgaagcggagg
cagtatgtggacactgagggtgccctgaagggggcgaaactgtcccaatctgctgaagag
atggctgccaacctgacagtacagacagagtcaggatgtgccaacattgtgtctgccgcc
ccttgtcagtcggacccccaacagtacgaggttcagttctctagactacggaactttctc
tcagaagcagaggtatcttggggtaaggaggtgagctgcgtcctctacccgctcttcgtc
tacctccacctggacatggtgcgctgcggcctgaaggggacggtagacagcttttacagc
cgcttccacggcatgttcctccaggacgccgagcagcgcgccaccgtcgagcagctccgc
cacgtgctcacctcgcaggacgtgtcggccaaccccaagctctgcgccttcctcgaccac
aagtacgtggtgcacctgacggagccggcctacagctacctgctgcgctacctgcagagc
gaggacaacagcgccctctgcagggccctgagcactcacctgcaggtggaggtcactacc
tcgccgcgcacagactaccagctctacgggacgggcggcggggccgccacggcccccaac
tccacctcgtcctgggcgggcgtggatggggcggagggaggggagggcgtggaggtgcct
gcagggatcccgcagagcgaagcggctctggaggcgctgcaggactgcattaagaaggtg
cgcgaggggccgccgtcgctcaccaccgtgtgcttctacgccttccaccacacggagcag
ctgctgaacgcggcggaggtgtcggccgacagcaggctgctggccggcggcttcgacacc
tcggccgtcaagctgtggagcctgagggcccggaagctgaaggccaagccgcaccgggtc
gacgtgtcgcacgtccgtctggcctgcgacatgctggaggaggaggcggatgaggaagac
ggctcgggaagcgagatcaagaccctgcgaggccacagcggccccgtgttccgcacagcc
ttcctcacggacagctcgggcctgctgacctgctccgaggacacgtccatccgctactgg
gacctcggcagcttcaccaacacggtgctctaccagggccacgcctaccccgtgtgggac
ctggacgtcagcccctgcagcctgtacttcgccagcggctcccacgaccggactgcgcgc
ctctggaccttctcgcgcacctaccccctgcggctgtacgccggccacttggccgacgtg
gactgcgtcaagttccaccccaactccaactacctggccacaggctccaccgacaagacc
gtccgcctgtggagcacccagcagggggcgtcggtgcgcctcttcaccggccaccgcggc
ccggtgttggcactggccttctctcccaacgggaagtacctggcgtcggccggcgaggac
cagagggtgaagctgtgggatttggcctcgggggccctgtacaaggacctgcgagggcac
tcggacagcgtgaccagcctgtccttcagccccgacagcagcctggtggcgtcctcctcc
acggacaactcggtcagggtgtgggacatccgcagctcgcacggcgggggggcgccgtcc
gacggctcgtccggcgagatggtggggctctacacgggtcacaccagcaacgtgctcaac
gtccagttcatggcctgcaatctcctcatggtgaccgggaccgcgcaggagaaacaggaa
ccgtag
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