Osmerus eperlanus (European smelt): 134009517
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Entry
134009517 CDS
T10927
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04512
ECM-receptor interaction
Brite
Lectins [BR:
oep04091
]
C-Type lectins
Lecticans
134009517 (frem1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134009517
NCBI-ProteinID:
XP_062305000
LinkDB
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Position
23:complement(4727522..4745946)
Genome browser
AA seq
2194 aa
AA seq
DB search
MVVLRGTPGWTLLSWLLVGLVQPSQGSLVKTNLGLRVKRGRSASLQEGDLQFLIPNKKDA
CKVEVVLNEPITQRVGTLSPQVFDCHYLADEVKYVHNGCPILKEDTVKLRLYRFTVSETH
VEVFSLHVVIMEPDCNIIKLGPKSLQVPEFYGLSNILDGNTVSFNYEKQTSLECSVRVTS
HESHLPGHGQLVTGEPDLPSIRGDEPESFITLHQQHDNKARAKCKADDCLKGLKLVKVTK
VTCDEFLVMGLRYQHIDPPSPDIDYITIRLDLTDSRSGSIYQSERAWIPVLISGAIPNQP
PKPAFMSMFILEVDQFILTPLSTATVDAEDGETPKQLLVFNVTRPPAEGFITHLSDHTKP
VSSFTWLDLNDMLICYQPPNSSHTQRRNYEVEFEVYDFFFEKSPPIVVHMSVRTADTNAP
RVSWNMGLSLLEGQSRPITWDQLQIVDNDNLRAVRIITVDGLQHGRLTLRGGKGFMFTID
DIRAGAVRYHHDDSDTTKDFIVFRITDGRHQTRHKFPINILPKDDSPPFLTTNMLLELSE
GQTALLRGAVLQASDMDSSDDYILYNITRPPQAGEIMKLPGPGLTGFPVHRFLQKDLFHS
VVYYRHLGGEVFHDSFEVVLSDFHDPPNLSEPQVILVHINPVPDQPPKEVPGVSRCLVVK
ETEVVHLTKKQLHFVDVESPDSELTFTVTSPPFYTGSSRNPDAGRLFLVDSVPKFTKDSN
APVLRLFTQHAVNFLKVAYMPPVLDIGPYAQHIQMILSVTNQQGGTVTGICFNITVMPVD
NLAPEVILSPLAVKEGEESPLGSEHLWLADRDSLEESLRVELRKQPQHGALSLDGFPMAP
GQAFTLQHLKTLKVRYRHDSSETVGDDIEFTATDGTNAIGFVLHVDVEPVNDELPVVMPG
LKPDLGCAEGQDVIITAEYIYATDTDSDDNGLTYLIARQPYHGVVRKNSVVVDHFHQEDI
IAGVITYKHTGNEIGLLPRHDTITFIISDGEVDNHSFCCKNRGDVPTDLKQSLPVYDLKV
TVYPVDNQPPSIITGDVFVVDEGGSAPVTLAHLSASDKDTSLEELVVSLVSPPQFGYIEN
TLPSPGFEKSNLGISIASFSYRDLLNGHVNYVQSRHQRMEPTADQMMLCVSDGKHDSAHV
PFYIIVSPTNDEVPEFIARNITVNEGQVKELDPTLINASDLDVPKNELLFSVVQPPRHGA
VMSHALGHGAPPAARSAQRRSAAGVVVQDFTMSDLRNGMALMYKHDDTENMEDSFTLQLS
DGKHSLQRRVMVRVLPVNDEEPQVIRNTGLEVEAGEARLISSAILLSKDRDTPSPEIMYV
FETVPTQGLLQIKTGSDWVTLSAGESCNQETVDMNQLRYLHTGPLGTSSQDFFVFHLLDG
KNRSPAQHFLISIKDMEKGNIALFVKPVKVSRGDRVVLTTDVLSATDGSNSPEELVYTIT
RVPSHGHVECIRNPGLAVHTFSQMDIAANLLGYVHDNRATSPVETFQFVVTNGKASRTGT
LEIAVEMVDRVLPSLSRNSGLNIPQGSSMAVTPDVLALSDPDTSPSHLYFLLTQAPQYGH
LLLAGTPLSAKSNFTQKDLEELDVVYKHDGGQAQIDRFAFSACDSTDRGFLLEGKVHTEP
VFFTIQIKSLDSSAPEIKQLQTLWRAELLPGHRYGIFLTSRELRAQDAHSREEDITFHIL
RAPYFGYLENTSTGGFVRQHFSQRDLSRRVIVYVIDPTQEALSDSLEFRVSDPLGNTGPS
HTLELRWSRVELSGSEYCVCEGQGSVSLDILRSGNTEESSYVTIKVSEISATSGKDFLLS
PSSLIQFDPGVSRRSWQIEVVQDHLEEAEETFDVTLESPEGTVLGHISKAKITIKDFGKG
RCRQAEAPVGPSLGGQEAQDGPYPQHGSIQLETLPLDSLVLETLTRGDGMSQPEPIESKK
RLRATGNRNTIRPSSVHRNGTDTVYTYHGIMSLQVEDETSLSRKGRKVNVQVTSRGQQQP
QQAVPNSNHAPVPQIKVIRNGKSAQPTGKKSPRGSSSPRGSSSPQPCSPELMGLLLLNQT
TRQLTRCNGVSWRPWTPTDEMVSAQSCPAGWSYHSGYCYFQSAKRRSSWSAAARACRESH
RSNLVSVLSKADLDWLWDFSGRKPFWIGLHDRESRGRWEWVGGEPVSYTNWRKTPPRSKK
KSSKKCALVWKRAKWQIRDCETGRAHHYVCYTKL
NT seq
6585 nt
NT seq
+upstream
nt +downstream
nt
atggtggttctcagaggaacaccaggatggacgttgctatcatggctgcttgtgggactg
gttcaaccatcccaggggtcgcttgtgaagaccaacctgggtctgagagtgaagaggggc
cggtcagcctccctccaggagggggacctccagttccttatccccaataagaaggacgcg
tgcaaggtggaggtggtcctgaatgagccaatcacacagcgagtggggacactctcgcca
caggtctttgactgccattatctggctgatgaagttaagtacgttcataatggctgtccc
atattaaaggaggacactgtcaagcttcgactgtacagattcaccgtgtcggagacgcac
gtcgaagtgttctccctccatgtggtcatcatggaacccgactgcaacatcatcaagctg
gggcccaaatccctgcaagtcccggaattctacggcctgtccaacattctggatgggaac
accgtgtctttcaactacgagaagcaaaccagcctggagtgcagcgtccgtgtgaccagc
cacgagtcgcacctcccaggacacggtcagctggtgactggagagcctgacctgccgtcc
atcagaggagacgagcctgagagctttatcactctgcaccagcaacatgacaataaagcc
agagctaagtgtaaggcggatgactgcttgaagggactaaagctggtgaaggtcaccaag
gttacgtgtgatgagttcctggtcatgggcctgaggtaccagcacatagaccccccatcc
cctgacatcgattacatcaccatcaggctggatctcactgacagcaggagtggaagcata
taccagtcagagcgtgcctggatccccgtcttgatatcgggcgccattcccaaccagccc
cccaagccagcgttcatgtccatgttcatcctggaggtggaccagttcatcctcaccccc
ctctccaccgccaccgtggacgcagaagacggggagacgccgaagcagctcctggtgttc
aacgtcaccaggcccccggccgagggcttcatcacccacctgtctgaccacaccaagccc
gtctcctccttcacctggctggacctcaacgacatgctcatctgctaccagccgcccaac
tcctctcacacgcagcgcaggaactacgaggtagaatttgaagtttatgatttcttcttt
gaaaaaagcccaccaatcgtggttcacatgtcagtgaggacggcagacaccaatgcaccc
agggtgtcctggaacatgggtcttagtcttttggagggccaatctcgtccaatcacctgg
gaccagctccagattgtagacaatgacaacttgagggctgtgcgcatcattacagtggac
gggctacagcacggaaggctgaccttgcgaggtggcaagggcttcatgttcaccatcgac
gacatccgagctggcgcggtgcgctatcaccacgacgacagcgacaccacgaaggacttc
atcgtcttccgcatcaccgacgggcgccaccagaccaggcacaagttccccatcaacatc
ctcccgaaggacgacagcccgcccttcctcaccaccaacatgctgctggagctgtcggag
ggccagacggccctgctccggggagcggtgctccaggcctcggacatggactccagcgac
gactacatcctctacaacatcacccgtccgccgcaggctggggagatcatgaagcttcct
ggtccaggcctcacaggcttccctgtccaccgtttcctgcaaaaggacctgttccactcg
gtggtctactaccgacatcttgggggcgaagtgttccacgactcttttgaggtggtgctc
tccgacttccatgacccgcccaacctctcagagccccaggttattctggtgcacatcaac
ccagtgcctgaccagccccctaaagaggttcctggtgtgtcccgttgtctggtcgtcaag
gagacagaggttgtccacctgactaaaaagcagctccacttcgtggacgtggagtctccc
gacagtgagctcacgttcacggtcaccagtcctcccttctacaccggctcctccaggaat
cccgacgcaggaagactgttcctcgtggacagcgtccccaaattcaccaaagattccaac
gctcctgtgctcaggttgttcacacagcatgcagtcaactttttgaaagtagcgtacatg
cctcccgtcctggacatcggcccatacgctcagcacatccagatgatactttctgtcacc
aatcagcaaggaggcacggtcaccggcatatgtttcaacatcactgtgatgcctgttgat
aacctggctccagaggtgatcctgagtcccctggctgtgaaggagggagaggagagcccg
ctgggctcggagcacctctggctggcggaccgggactccctggaggagtccttaagggtg
gaactgagaaagcagccccagcacggagcgctctcgctggacggcttccccatggcccct
gggcaagccttcaccctccagcatctgaaaaccctaaaagttaggtatcgtcacgacagc
tctgagactgtgggagacgacattgagttcacagctactgacggcaccaatgctatcggc
tttgttttgcacgtcgatgtggaaccagtaaatgacgagttgccagttgtcatgcctggc
ttgaaaccagatctcggctgcgcagagggacaagacgttatcatcacagcagagtacatt
tatgccacagacacggacagtgacgacaacggtctgacctacctgattgcgcgtcagcct
taccacggagtggtccgcaaaaacagcgttgtggtggatcacttccatcaggaagatatc
atcgctggagtgatcacctataaacacaccggtaatgaaattggactacttccccgtcat
gacaccattaccttcataatatctgacggagaggtggacaatcattctttctgctgcaag
aacagaggagatgttccgaccgacctcaagcagagcctgcctgtttacgacctcaaagtc
acagtgtatcctgtggacaatcagccaccttccattattaccggggatgtgttcgtggtg
gatgaaggtggttcagcccccgtcaccctggcccatctcagcgcctcggataaagacacc
agtctggaagagctggtggtcagcctggtctctcctcctcagtttggctacatcgaaaac
accctgcccagtcccggctttgagaaaagcaacttgggcataagcattgcctccttctcc
tacagggacctcctgaacggccatgtgaactatgtgcagtccagacaccagaggatggag
cccaccgctgaccagatgatgctctgcgtgtctgacggcaagcacgactccgcccacgtt
cccttctacatcatcgtcagccccaccaatgacgaggtccctgagtttatcgctaggaac
atcaccgtgaacgagggccaggtgaaggagctggaccctactttgataaatgcgtcggac
ctggacgtccctaagaacgagctgctgttcagcgtggtgcagcctcccaggcacggggct
gtcatgagccatgccctcggccacggagccccgcccgcggcgaggtcggcccagcgccgc
agcgccgcaggggtggtggtgcaggacttcaccatgtcggacctgaggaacggtatggct
ctgatgtacaagcacgatgacactgagaacatggaggacagtttcaccctccagctgagc
gatgggaaacacagtctccagaggagggtgatggtcagagtgcttcctgtcaatgatgag
gaaccacaagtgatcagaaatactggtctggaggtggaagctggggaggccagactgata
tccagcgctatcctcctctctaaagacagagacactccctctccggaaatcatgtacgtg
tttgagactgtccccacccaggggcttcttcagatcaagacgggcagtgactgggtgact
ttaagtgccggggagagctgcaaccaggagacagttgatatgaaccagctgaggtacctg
cacacagggcccctggggaccagcagtcaggacttctttgtctttcacctgctggatggg
aagaatcgctcacctgctcagcacttcctgatctccatcaaggatatggagaaaggtaac
atcgccctctttgtgaaacctgttaaagtcagtcgaggagaccgtgtcgttctgacaacc
gacgtcctgtcagcgacggatggttcaaacagcccagaggagctggtttacaccatcacc
agagtcccctctcacggccatgtggagtgcatcagaaaccctgggctggccgtgcacacg
ttcagccagatggacattgctgccaacctcctgggttacgtccatgacaacagagccact
tcacctgtggagactttccagtttgtcgtcaccaacggaaaggcctcccgcactggcacc
ctggagatcgccgtggagatggtggaccgtgtcctgccttccctgtctcgtaacagcgga
ctgaacatccctcagggttcctccatggctgtgacccccgacgtcctggccctgtccgac
cccgacacctcgcccagccacctctacttcctcctgacccaggccccacagtacggacac
ctgctcctcgctggcaccccgctctccgccaagtccaacttcactcagaaagacttggag
gagctggatgtggtttataagcacgatggcggacaggcgcagatagaccgctttgccttc
tctgcttgtgatagcacggacaggggctttctgctggaggggaaagtgcacacagagcct
gtcttcttcaccattcagattaagtcgttggacagctctgctcctgagatcaagcagctc
cagacactgtggagggcagagcttctacccggccaccgttacgggatcttcctgacgtcc
cgggagctgagggcacaggacgcccactcgcgagaggaagacatcaccttccacatcctc
cgagcgccctactttggctacctggagaacactagcacaggaggatttgtccggcagcat
ttctctcagagggacctgagcaggagggtcatcgtctatgtgattgatccaacgcaggaa
gccctgtctgacagtctggagttcagagtgtcagatcctctgggaaacaccggaccctcc
cacacactggagttgcgctggtctcgtgttgagctgtctgggtctgagtactgcgtctgt
gagggtcaaggatccgtttcccttgacatcctgcgtagcggcaacacagaggaatcctca
tacgtcaccatcaaggtgagtgagatctcagcaacttctggaaaagatttcctattgagc
ccctccagcttaatccagtttgatcctggagtgtccagaaggagctggcagattgaggtg
gttcaggatcatctggaggaggcagaggagacgtttgatgtgacactagagtctcctgaa
ggcacagttctgggccacatctccaaagccaaaatcaccatcaaggactttgggaaagga
cggtgtcggcaggcggaggctcccgtcgggcccagtctgggagggcaagaggctcaggat
gggccctacccccagcatggctccatccagctggagaccctgcccctcgatagcctggtc
ctggagaccctgacccggggtgacggcatgtcacagccagagcccatcgagtccaagaag
agactcagagccacaggcaacagaaacactattagaccatcgtcagttcatcgcaacggg
acggacactgtgtacacttaccatgggatcatgtcacttcaagtggaggatgaaacatcg
ctgtccaggaagggtcgaaaagtgaacgtgcaagtcaccagcagggggcagcaacagcca
caacaagcagtgcccaactctaaccatgcacctgtccctcaaataaaggttatcaggaat
ggaaaatctgctcagcccactgggaaaaagagccctcggggcagctccagccctcggggc
agctccagccctcagccctgcagtcctgagttgatgggcctgctgctcctcaaccagacc
acccgccagctcactcgctgcaacggggtctcctggagaccatggacacccacagatgag
atggtcagcgctcagtcctgccctgcaggctggagctatcacagcggctactgctacttc
cagagcgccaaacgcagatcctcatggtccgctgctgccagagcatgcagggagagccac
cgatccaatcttgttagtgttctctccaaggctgatctggactggctgtgggatttcagt
ggaaggaaaccattttggataggtctgcacgacagggagagccgcgggcggtgggagtgg
gtgggaggagagcccgtcagctacaccaactggaggaagaccccacccagatctaagaag
aagagcagtaagaagtgtgccctggtgtggaagagagccaagtggcaaatcagagactgt
gaaacaggcagggctcatcactacgtgtgttacaccaagctgtga
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