Osmerus eperlanus (European smelt): 134009535
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Entry
134009535 CDS
T10927
Name
(RefSeq) LOW QUALITY PROTEIN: phospholipid-transporting ATPase ABCA1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep02010
ABC transporters
oep04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
134009535
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
134009535
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
oep02000
]
134009535
Transporters [BR:
oep02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
134009535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC2_membrane_3
ABC_tran
R1_ABCA1
AAA_21
AAA_15
DUF4162
AAA_23
AAA_29
Motif
Other DBs
NCBI-GeneID:
134009535
NCBI-ProteinID:
XP_062305027
LinkDB
All DBs
Position
23:6878815..6996743
Genome browser
AA seq
2253 aa
AA seq
DB search
MGLLTQLGLLLWKNFILRKRQKIRLVVELIWPLFLFFILVGVRSTNKPIYKGQCHYPNKA
MPSAGVLPWLQGMMCNINNPCVSHPTAGETPGQVNNFNGSIIAGLLIELQTLVVERSILT
KAQRLSGDLDQWALILEKSNPANGQPIALRNVLNDDERFTAYLRGNLSVPSSVVDGLMSS
QLRMNPGMGTSSPDNLKTALCDGTSLDRYVLFTSPADKQAFQNISCSLTPQQLTGARRAF
LENLDSRKVFSAIPQTLALDPRETFNLLSKTSMDAIPVIGEIAALQNSDVLKAAYELNFS
EDMFGSINTLLCGQQPDSNSTNTTSAFQGFGGRQNNTDGNGTLAGAGSRNSSVFCQTLVE
TLEGTPGLRVVWSTFRPLLQGKVLYTPDTPATRRMVKEANSTFNALAMLRELADAWDVLG
PRLWNFLQDGRQVNALRSLLANPLFAVGLNQQLTSSRFSAEQLANFLYNGPPEERPAGMP
PSDWRDMFNTTSQVLELLKQFIGCLDLNKFEAVPSEKHLVNKAQELLKEDKYWAGIVFQD
LKNDTSTPPPHVKYKIRMDIDEVERTNKLKERSWSPGARDNAFNDLRYIWGGFAYLQDMM
DHGIIRTQTATAQPLGVFVQQMPYPCYVDDAFVQSIGAILPMFLVLSFMYSICMMIKGLV
LEKELRLKEVLRAVGVRNGALWLAWFVENLALLAVPCVLMSVLLKYGKVLQYSDPSVIFV
FLLVFCLSTIMQCFFISVFFSKANLAAACGGLIYFVLYLPHVLCYAWRDVMGFGAKIAVS
LLSCVAFGYGCENFSKYEEQGIGIQWSNIRRSPEDGERYSFIVSIFMMLVDSLLYWFLTW
YIENVFPGQYGIPKPWYFPFTTSYWCGTTSASDADLTLLKENGQYNDRLEKPAPEMKAGV
SIRNLVKIYKTGKKLAVDGLSVDFYENQITSFLGHNGAGKTTTMSILTGLFAPTSGTAFV
NGLDIRTDMDTIRKHLGMCPQHNVLFNDLTVEEHIYFYGRLKGRSRAEVNMEIHQMLADV
GLPHKRKELAKNLSGGMQRKLSVAIAFVGGSNIVILDEPTAGVDPYARRGIWDLLLKYKQ
GRTIILSTHHMDEADILGDRIAIISHGKMCCCGSSLFLKKCFGSGYYLTLVKVAEGGTSQ
RPASTHTQVKEEEACPSMNSSVDEGIDSQSWTNSSEPSDLTAINRLVRRHIPEAVFLENI
GQEITYILPYSGARDGTFALLFKELDLEMGDLGVSTYGISDTTLEEIFLKVAEDTGVDVE
EPAKNEALVRDWKRSSRESKRNSVANVRTDSDQVPMKSEDFKGRFTRKVEASEKVANTNG
KGSVVITGWELIRRQFLALFIKRFHYARRSRKGLVAQVVLPAVFVCLSLIFSLIVPPFSE
YPSLELQPWMYGLPQTTFFSNDGPDKMEVSRVVDSLVNKPGFGTRCMTGDPIPKLPCALN
ASDWLTPSVDPSISDIFLNGNWTMANPSPSCQCSTPQRTIMLPDCLPGAGGLPPPQRIQN
TTDTLQDLTGRNVTDFLLKKYGQSGRSRYGGISVGGVNSQVRMTAPEIEAVTRDLKILFN
SSMDNTTDQILQNAETLLKELGTRDNVKVWFYNEAWHSLVSFLSVANNAILRGNLSMGQS
PRDYGISTSSHPLNLTKEQLSMALATTSTDVVVSICVIFAMSFIPASFVLFLIQERVSKA
KHLQFVSGVNPAVYWLANFAWDMCNYIVPCVIVIVIFLCFQQKSYVSPANLPALILLLLL
YGWSITPMMYPAAFFFTVPSTAYVVLTCINLFIGINGSVATFVMELFDDENISNINNIVK
QVLLIFPHFCLGRGLIDMAKNQAMATLFSSFGEDRFKNPLGWDMVGKNLCAMCIXGLVMF
TITLLIQYNFFFKPRLVSGESLPKGDEDVDVARERQRVHQGGGKNDLLRICDLTKVYRGK
KVPAVDRVCVGVPAAECFGLLGINGAGKTTTFKMLTGDIAVSGGEAFLNGYSIRTQMRDV
HQNMGYCPQFDAINDLLTGREHLEFYARLRGVAEKEVATVAEWGIQKLGLVKYSNKSAGT
YSGGNKRKLSTAMALIGCPPVVFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSM
EECEALCTRMAIMVNGRFMCLGSIQHLKSRFGEGYTLIVRVGGSPPTLAPVEEFVQETFP
GSVLKEKHHNTLQYQLPHSEGALATIFSQFTTHQERLAVEDYSVSQTTLDQVFVNFAKHQ
HDESGPVTYDNPVDTSDEVPMEAMKTSLAAENV
NT seq
6762 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctgacacagctgggcctgctactctggaagaacttcattctccggaagaga
caaaagatccgcctggtggtcgagctgatatggccgctgttcctgttcttcatcctggtc
ggcgttcgctccaccaacaagcccatctacaaaggccagtgtcattaccctaacaaagcc
atgccctccgctggcgtgttgccgtggttacaagggatgatgtgcaacatcaacaatccc
tgcgtgagccacccgacggcgggagagaccccgggtcaggtcaacaacttcaacggctcc
ataatcgcagggcttctgattgagcttcagacccttgtggtcgagcgatccatcctgacc
aaggctcagcgtctctctggggatctggaccaatgggctttgatcttggagaagtcgaat
ccagccaatggtcagcccatcgccctgaggaacgttctgaatgacgacgaaaggttcacc
gcgtatctgagagggaacttatccgtgccctcgtccgtcgtagatgggctgatgtcttca
cagctccgcatgaatccgggcatgggcacatcgagcccagacaacctgaagactgcgctg
tgtgacggcaccagtctggacagatatgtgctcttcaccagccccgctgacaagcaggcc
tttcagaacatcagctgctctctcacccctcagcagctgacaggagccaggcgcgctttc
ctggagaacctggactcgaggaaagtcttctctgctataccacaaaccttggctctggat
ccaagagagacatttaacttgctgtccaaaacatccatggatgcaataccagtgatcgga
gagatagccgcactgcaaaactcggatgtcctgaaggctgcgtacgagctgaatttcagt
gaagacatgtttggcagcatcaacacgctgctatgtggtcaacaaccagacagcaactcc
accaacacgaccagcgctttccaagggttcggagggaggcagaacaacacagacggcaac
ggcacgttagccggcgctggaagtcgaaattccagtgtgttttgccagaccttggtggag
accctggaggggacccctggtctccgggtcgtctggagcaccttcaggcctctgctgcag
ggcaaggtcctctacactccagacacacctgcaacccgacgaatggtgaaagaggcaaat
agtacattcaacgccttggccatgttgagggagctggcggacgcctgggacgttcttgga
cctcggctttggaacttccttcaagatggccgccaagtcaatgcactgcggagcctgttg
gctaatccgctgtttgccgtcggcctcaaccagcaactgaccagctcaagattttcggcc
gagcagctggccaacttcctgtacaacgggcccccggaggagcggcccgcgggcatgccg
ccctcagactggcgcgacatgttcaacaccaccagccaagtcctggagctcctcaagcag
ttcattgggtgtctggacctgaataagtttgaggctgtccccagtgagaagcatctggtg
aacaaagcccaggagcttctgaaggaggacaaatactgggccggtatcgtgttccaagac
ctgaagaacgataccagcaccccccctcctcacgtcaagtacaaaatccgcatggatatc
gacgaggtggaacgcacgaataagttaaaagaaaggtcatggtccccgggggccagagac
aacgccttcaacgacctgcgctacatttggggaggatttgcctacctccaggacatgatg
gaccacggtatcatacgcactcaaacagccacagcccagcccctcggtgtgtttgtccag
caaatgccatacccctgctatgtggatgacgccttcgtccagagcatcggagccatcctc
cccatgttcctggtgctgtcctttatgtactccatctgcatgatgatcaaaggcctggtc
ctggagaaggagctcaggctcaaggaggtcctgcgggccgtcggcgtccgcaacggagct
ctgtggctcgcctggttcgtcgagaacttggcactgctcgcggtgccgtgcgttctaatg
agtgtcctgcttaagtacggcaaggtgctgcagtacagcgacccctcggtgatcttcgtc
ttcctgctggtcttctgcctgtccaccatcatgcagtgcttcttcatcagcgtcttcttc
tccaaggccaacctggcggccgcctgcggaggcctcatctacttcgtcctctacctgccg
cacgtcctctgctacgcctggcgagacgtcatgggcttcggcgccaagatcgctgtgagt
ctgctgtcgtgtgtggccttcgggtacggctgtgagaacttctccaagtatgaggagcag
ggcatcgggatccagtggagcaacatccgcagaagcccagaagacggagagcgctacagc
ttcattgtgtccatcttcatgatgctggtggattcccttctttactggtttctgacttgg
tacatcgagaatgtgtttccaggccaatatggaatccccaagccctggtactttcctttc
accacctcctattggtgtgggacgacctccgccagtgacgctgacctcactttgctcaag
gagaacggacagtataacgatcgcctggaaaagccggctcctgagatgaaggcaggggtt
tcaattaggaaccttgtgaagatctacaaaacgggtaaaaaacttgctgtggacggcctg
agtgtggacttctatgaaaaccagatcacttcattcctcggtcacaatggggccgggaaa
acaaccaccatgtcaatcctgacaggcctttttgcccctacatctgggacggcgttcgtt
aacggacttgatatccggacagacatggacaccatcaggaagcacttgggaatgtgtcca
cagcacaatgttttatttaatgacttgactgtcgaggagcacatctacttctacggccgt
ctgaaggggcgcagccgcgccgaggtgaacatggagatccaccagatgctcgcagacgtg
ggcctgccgcacaagcgaaaggaactggccaagaacctgtcaggtgggatgcagaggaaa
ctgtccgtagccatcgcttttgtgggcggctccaacatcgtcatcctggatgagcccacg
gcaggagtggacccctacgcccgcagggggatctgggacctgctgctcaagtacaaacaa
ggccgcacaatcatcctctccacacaccacatggacgaggcggacatcttgggagaccgc
atcgccatcatctcccacgggaagatgtgctgctgtggctcctccctcttcctgaagaag
tgcttcggcagcgggtactacctgaccctggtgaaggtggcagagggggggacatcccag
cgcccagcatccacgcacactcaggtcaaagaggaggaggcctgtccctccatgaacagc
agtgtggatgaggggatcgacagccagagctggaccaactcttcggagccctcagacctt
acagccattaataggctggtgcgcaggcacatacccgaggcagtgtttctggagaacatc
ggccaggagattacctacatcctcccctacagcggggcccgggacggcactttcgccctg
ctctttaaagagctggatctggagatgggcgacctgggagtctccacatatggaatctcc
gacacaacactggaggagattttcctgaaggtagcggaggacacgggtgttgatgtggag
gagccagctaaaaatgaagcattggtacgagactggaaaaggagttcccgtgaatccaag
cggaacagtgtggctaatgtcaggacagattcagaccaagtccccatgaaaagtgaggat
tttaaggggcggtttaccagaaaagtggaagcctcggagaaggtggccaacaccaatggc
aagggctccgtggtgatcaccggctgggagctgatccgccgccagttcctggcgctcttc
atcaagcgcttccactacgccaggaggagccgcaagggactcgtcgcccaggtggtcctg
ccagccgtgttcgtctgcctgtctctcatcttctccctgatcgtcccccccttctccgag
taccccagcctggagctccagccctggatgtacggcctccctcagaccaccttcttcagc
aatgacgggcctgataagatggaggtgtctcgtgtggtcgactcgttggtaaacaagcct
ggatttggaactcgctgcatgactggggaccccataccgaagttgccgtgtgccttaaac
gcctctgattggctcaccccctctgtggatccatccatcagcgacatcttcctcaacggg
aactggaccatggctaacccctccccttcctgtcagtgcagcacccctcaacgcaccatc
atgctgcctgactgccttccaggggctggaggtctcccccctcctcagaggatacagaac
accacagacacactgcaggacctgacgggaaggaatgtgactgacttcctgctcaagaag
tacggacagtcaggccgaagcaggtacggagggatctccgtaggaggggtcaactcccag
gtgcggatgacggcgccggaaattgaagccgtgaccagggatttgaagatcctgttcaat
tcctccatggataataccactgatcagatcctgcagaatgccgagaccctgctgaaggag
ctgggaacgcgggacaacgtcaaggtgtggttctacaacgaggcgtggcacagcctggtg
tccttcctcagcgtggccaacaacgccatcctgaggggcaacctgtcgatgggccagagc
ccgcgggactacggcatctccacctccagccaccctctcaacctcaccaaggagcagctc
tccatggcactagcgacgacctccaccgacgttgtggtgtccatctgcgtgatcttcgcc
atgtccttcatcccggccagcttcgtcctcttcctcatccaggagcgggtctccaaggcc
aagcacctgcagtttgtcagcggggtcaaccccgccgtctactggctggctaacttcgcc
tgggacatgtgcaactacatcgtcccgtgtgtcatcgtcatcgtcatcttcctgtgcttc
caacaaaagtcctacgtgtcaccggccaacctgccggcgttgatcctgctgctgctgctg
tatgggtggtccatcacccccatgatgtaccctgccgcgttcttcttcaccgtccccagc
acggcctacgtggttctcacctgcatcaacctcttcatcggcatcaacggcagcgtggcc
accttcgtcatggagctctttgacgacgagaacatctccaacatcaacaacatcgtgaag
caggtgctgctgatcttccctcacttctgtctgggccgaggcctcatcgacatggccaag
aaccaggccatggccactctgttcagcagcttcggggaagaccgttttaaaaaccctctg
ggctgggacatggtggggaagaacctgtgtgccatgtgcatcncaggactggtcatgttc
accatcacactcctcatccagtacaatttcttcttcaaacccagactcgtttccggcgag
tcgctgcccaagggggatgaggacgtggatgtggctcgggagcgacaacgcgtgcaccaa
ggcggcggcaaaaacgacctcctgcgaatctgtgatctcaccaaggtgtaccgagggaag
aaggttcccgctgtggacagggtgtgtgtgggcgtgcccgccgctgagtgcttcggcttg
cttggaatcaacggcgcgggaaaaaccaccacctttaagatgctgactggagacatcgct
gtctccggaggcgaggccttcctaaacggatacagcatccgcacgcagatgcgggacgtg
caccagaacatgggctactgcccgcagttcgacgccatcaacgacctcctgactggacgc
gagcacctggagttctacgcccgcctgcgcggcgtagcggagaaggaggttgccacggtt
gccgaatgggggatccaaaagctgggccttgtcaaatattccaacaagtcggccggaacc
tacagcggcgggaacaaacgcaagctctccaccgccatggctctgattggctgccccccc
gtggtcttcctggacgagccgacgacaggaatggaccccaaagctcgcaggttcctgtgg
gactgcatcctgagtgtcatcaaagaaggacgctcggtcattctgacgtcgcacagcatg
gaggagtgtgaggctctgtgcacccgcatggccatcatggtgaacggacgcttcatgtgt
ctgggcagcatccagcacctgaagagcaggttcggcgaaggctacacactgatcgtgcgc
gtcggagggtctccgcctaccctggcccccgtggaggagtttgtccaggagaccttcccc
ggcagcgtcctgaaggagaagcaccacaacaccctgcagtaccagctcccacacagcgag
ggcgccctggccaccatcttcagccagttcaccacccaccaggagagactggccgtggag
gactactcggtgtcgcagaccaccctggatcaggtcttcgtgaactttgcgaaacaccag
catgacgagagcggtcctgtgacctacgacaaccctgtggacacgtcagacgaggtgccc
atggaggccatgaagacatcactggcggcagaaaatgtctaa
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integrated database retrieval system
