Osmerus eperlanus (European smelt): 134009946
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Entry
134009946 CDS
T10927
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134009946 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oep03019
]
134009946 (xab2)
03041 Spliceosome [BR:
oep03041
]
134009946 (xab2)
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
134009946 (xab2)
Spliceosome [BR:
oep03041
]
Complex B
Other components
Prp19-related factors
134009946 (xab2)
Complex C
134009946 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_19
TPR_12
TPR_8
TPR_2
TPR_15
ARM_TT21_C
NRDE-2
ARM_TT21
TPR_1
Tcf25
Motif
Other DBs
NCBI-GeneID:
134009946
NCBI-ProteinID:
XP_062305723
LinkDB
All DBs
Position
2:7268251..7274693
Genome browser
AA seq
848 aa
AA seq
DB search
MPSQNGKPDVMFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNGGKSILNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPTYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQSK
ITRCRRSFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLASVVNDESFVSKEGKSNYQLWHEMCDLISQNPDKVKSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGKDEDDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGKPRQIINTYTEAVQTVDPMKATGKPSSLWVSFAKFYEENEQLDDARTIFEKSTKVN
YKQVDDLAGVWCEYGEMELRHENYDQALRILRKATAIPSKKAEFFDTSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHSYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
FGLARHAMAVYERATEAVENDERHQMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDQHSR
DMCLRFADMESKLGEIDRARAIYSFCSQICDPRLTAHFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMTSQMMKATTLGAVSDLAPGQGSLDDMKMLEQRAQQLAAEAEQDK
LKPKEKILFVRSDTSRSELAELAKQANPDEIDIDEDEEDEDEEDQGPEEVQLEQKSVPTA
VFGGLKED
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccatcgcaaaatgggaaaccggatgtcatgtttgaagaagatgacctgccttacgag
gaagaaatcatcagaaacccttattcggtcaagtgctggatgcgttacattgagttcaaa
cagaatggtggcaaatccattctgaatatgatctacgaacgagcattgaaagaactacct
ggaagttacaagctatggtacaactacctgagggaaagacgaaaacaggtaaaggggaag
tgcatcacagagccaacttatgaggaggtcaacaactgccatgagagagcattggtgttt
atgcataagatgcctagaatatggctggactactgccagttcctggtgtcccagtctaag
atcacaaggtgtaggaggtcctttgaccgtgcgctcagagcccttccagtcacacagcat
cctcgcatatggcctctgtaccttcgctttgcacgcaacctgcccctgccagagacagcc
attcgggtttatcgcagataccttaagctgtctccagagaacgcagaggagtacatagat
tatctccgctctgttggccgtctggacgaagcagccgtgcgtctggcgtcggttgtcaac
gatgaaagctttgtgtccaaggagggaaagtcaaactaccagctttggcacgagatgtgc
gacctgatctcccagaaccctgacaaggtgaaatctctgaatgtcggcgccatcatccga
ggaggcctcacgcgtttcacggaccagctgggcaaactgtggtgctccctcgccgactac
tacatccgcagcgggcactttgagaaggctcgtgacgtctacgaggaagccatcctgacg
gtggtaacagtgagggacttcacccaggtgtttgacagctatgcccagtttgaggaaagc
atgatcgctgccaagatggaaacaacctcagagatgggcaaagacgaagatgatgacatc
gacctggagcttcggcttgctcgctttgagcagctgatcgcacggcggcccctcctgctg
aacagcgtactgctgcgtcagaacccacacaacgtccacgagtggcataaaagggtcaag
ctgtacgatggaaaaccgcgacagatcatcaacacctacacagaggcagtgcagactgtg
gatcctatgaaggccacagggaaaccttcctccctctgggtctccttcgcaaagttctac
gaagagaacgagcagcttgatgatgcacggaccatctttgagaagtccaccaaggtcaac
tacaagcaggtggatgaccttgcaggggtttggtgtgaatatggagagatggagctccgc
catgagaactatgatcaggcacttcgtattctgaggaaagctaccgccatcccatccaag
aaagcagagttcttcgatacatccgagccagtccagaatcgagtgtacaagtccctgaag
gtctggtccatgttggcagacctggaggagagtctcgggacattccagtctactaaggca
gtgtatgatcgcatcatagacctgcgcattgccacgcctcagatcataattaactacgcc
atgttccttgaagagcacagctattttgaggaaagctttaaggcatatgagcgtggcatc
gctctctttagatggcccaatgtgtatgacatctggaacacctatctcaccaagttcata
gaccggtatgggggcaagaagctggagagagccagagacctgtttgagcaggctctggac
ggctgcccagcaaagtttgccaagaccatctacttactgtatgccaaactggaagaggag
tttggtctcgctcgccatgccatggcagtctatgagagagccacagaggccgtggagaat
gacgaaagacaccaaatgttcaacatctacatcaagagagctgcagaaatctacggagtc
acctacaccagagctatttaccagaaagctatagaggtccttccagatcaacactccagg
gatatgtgcttgcgctttgctgacatggagagcaaactgggcgagatcgaccgcgccaga
gccatctattccttctgctcccagatctgtgatcccaggctgacggcccacttctggcag
acgtggaaggagtttgagatccgccacgggaacgaggacaccatcagggagatgctgaga
atcaagcgcagtgttcaggccacgtacaacactcaggtcaacttcatgacctcgcagatg
atgaaggccaccacccttggtgccgtctctgatcttgccccagggcagggaagtcttgac
gacatgaagatgctggagcagagggcacagcagctggcagccgaggccgagcaggacaaa
ctcaaacccaaggagaagattctcttcgtcaggagtgacacatctcgcagtgagctggct
gaactggcaaagcaagccaaccctgatgagattgacatcgatgaagatgaggaggatgaa
gacgaggaagatcagggtccagaggaagtgcagctggaacaaaagagtgtccccacagct
gtgttcggagggcttaaagaagactga
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