Osmerus eperlanus (European smelt): 134010053
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Entry
134010053 CDS
T10927
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03020
RNA polymerase
oep03420
Nucleotide excision repair
Brite
Enzymes [BR:
oep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
134010053 (polr2a)
Transcription machinery [BR:
oep03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
134010053 (polr2a)
DNA repair and recombination proteins [BR:
oep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
134010053 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134010053
NCBI-ProteinID:
XP_062305903
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Position
23:complement(7792434..7808917)
Genome browser
AA seq
1968 aa
AA seq
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MHGPPSGDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFMTKIMKVLRCVCFFCSKLLVDSN
NPKIKDILSKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQQETEEDISKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLNPERVHEIFKRISDEEDVILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMIDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPFWTGKQIFSLIIPGHINV
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DVTRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVE
FQNMATLKPSNKAFEKKFKFDCSNERALRRTLQEDVVKDVMTNALVQSTLEKEFEKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTATDLNPLRVVEGVQDLSKKLVI
VNGEDPLSRQAQQNATLLFNIHLRSTLSSRRMTEEFRLTTEAFDWLLGEIESKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVTEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVGLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTSRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYS
PTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPSSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPS
YSPSSPRFTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPT
SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKY
SPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEENN
NT seq
5907 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcatcatcagcccagatgagcttaaacggatgtctgttacggaaggggggattaag
taccctgaaaccacagaaggagggcgtcccaaacttggtggccttatggacccaagacaa
ggggtcatagaacgatctggaaggtgtcagacatgtgcaggtaacatgacagaatgtcca
ggtcactttggccacatagaactggccaagcctgtgttccatgtgggcttcatgacaaag
atcatgaaggttctacggtgtgtctgcttcttctgctccaaactcctcgtcgattcgaat
aaccccaagatcaaagacatcctatccaagtcgaaggggcagcctcggaagaggctgacc
catgtgtacgacctgtgtaaaggaaaaaacatctgtgaaggcggggaggaaatggacaac
aagttcggagtagagcagcaggagaccgaggaggacatctctaaggaaaagggccacggt
ggctgcgggcgctaccagccccgcatccgccgctccggcctggagctgtacgccgagtgg
aagcacgtcaacgaggactcccaggagaagaagatcctgctgaaccccgagcgcgtccac
gagatcttcaagcgcatctccgacgaggaggacgtcatcctgggcatggaccccaagttc
gcccggcccgagtggatgatcgtcaccgtcctccccgtgcctcctctggccgtccgcccc
gccgtggtcatgcaggggtcggctcgcaaccaggacgacttgacgcacaaactcgcggac
atcgtcaagataaacaaccagctgcgccggaacgagcagagcggcgcggcggcccacgtc
atcgccgaggacgtcaagctgctccagttccacgttgccaccatgattgacaacgagcta
ccgggcctgcctagggcaatgcaaaagtctggccggccgctcaagtccctcaagcagcgg
ctgaaggggaaggagggccgtgtccgggggaacctgatggggaagcgtgtggacttctcc
gcccggacggtcatcacccccgacccgaacctgcagatcgaccaagtcggtgtgccgcgg
tcaatcgccgccaacatgacctttccggaaatcgtgacgcccttcaacatcgacaggtta
caagagcttgtgcgaagaggcaacagccagtatccaggagccaaatatatcatccgtgac
aacggggatcgaatcgacctccggttccaccccaaaccaagtgaccttcacctccagatt
ggctacaaggtggaaagacacatgtgcgatggagacatcatcatcttcaacagacagccc
acgctacataaaatgtccatgatggggcacagggttcgaatcctgccctggtccactttc
cgactcaacctcagtgtgaccaccccatacaacgctgactttgacggggacgagatgaac
ctccacctcccccagtccctggagacccgggcggagatccaggagctggccatggtgcct
cgtatgattgtcacgccccagtccaacaggcccgtcatgggcatcgtgcaggacaccctc
acggccgttcgcaagttcaccaagagagacgtcttcttagagaggggtgaggtcatgaac
ctgctgatgttcctgtccacgtgggacggcaaggtgccccagcccgccatcctgaagccc
cggcccttttggaccggcaagcagatcttcagcctcatcatccccggccacatcaacgtc
atccgcactcacagcacccacccggacgaggaggacagcgggccctacaagcacatctcc
cctggcgacaccaaggtgattgtggagaacggagagctgatcatggggatcctgtgtaag
aagtctctggggacctccgccggctccctggtccacatctcctacctggagatgggccac
gacgtcacccggctcttctactccaacatccagacggtggtcaacaactggctgctcatt
gagggtcactccattggtattggtgactccattgctgatgccaagacataccttgacatt
cagaacaccatcaagaaagccaaacaggatgtgatagaggtgatcgagaaggcccacaac
aacgagctggagcccacccccggtaacacactgaggcagaccttcgagaaccaggtcaac
cgtatcctgaacgacgctcgtgacaaaacgggttcctccgcccagaagtccctgtcggag
tacaacaacttcaagtccatggtggtggccggctccaaaggctccaagattaacatctcc
caggttatcgccgtggtggggcagcagaacgttgaggggaagcgaatccccttcggcttc
aagcaccgcacgctgccccacttcatcaaggatgactacggccctgagagcaggggcttc
gtggagaactcctacctggccggcctcacgcccacagagttcttcttccacgccatggga
ggcagggaggggcttatcgacacggccgtgaagacggccgagactggttacatccagcgt
cgtctgatcaagtctatggagtctgtgatggtgaagtacgacgccacggtgaggaactcc
atcaaccaggtggtgcagctgcgctacggggaggacggcctggctggggagtcggtggag
ttccagaacatggccacgctgaagccctccaacaaggcttttgagaagaagtttaagttt
gactgctcgaacgagcgtgccctgaggcgcaccctgcaggaggacgtggtgaaggacgtg
atgaccaacgctctggtgcagagcaccctggagaaggagtttgagaagatgaaggaggac
agggagatcctccgagccatcttccccactggggacagcaaggtggtgctgccttgcaac
ttggccaggatgatctggaacgcccagaaaatcttcaggatcaaccctcgtacggcaacc
gacctcaaccccttgcgagttgtcgagggcgtgcaggacctgagcaagaagctggtgatc
gtgaacggggaagacccgctgagccggcaggcccagcagaacgccacgctgctcttcaac
atccacctgcgctccacgctcagctcgcgccgcatgaccgaggagttccgcctgaccacc
gaggccttcgactggctgctgggggagatcgagtccaagttcaaccagtccatcgctcac
ccaggtgagatggtgggggccctggccgctcagtccctgggggagcccgccacccagatg
accctgaacaccttccattacgccggcgtgtcggccaagaacgtcaccctgggcgtgccc
cgtctcaaggagctgatcaacatctccaagaggcccaagacgccctcgctcaccgtcttc
ctgctgggccaggcggcccgcgacgcagagcgggccaaggacatcctctgtcggctggag
cacaccaccctgagaaaggtgactgccaacacggccatctactacgaccccaacccccag
agcacggtggtgacggaggaccaggagtgggtcaacgtctactacgagatgcccgacttc
gacgtgacccgcatctccccctggctgctccgcatcgagctggaccgcaagcacatgacg
gaccgcaagctcaccatggagcagatcgccgagaagatcaacgccggtttcggagatgac
ttgaactgcatcttcaacgacgacaacgctgagaagctggtgctgagaatccggatcatg
aacagcgacgaaaacaagttccaggaggacgaggaagtggtggacaagatggacgacgac
gtgttcctaagatgcatcgagtccaacatgttgacagacatgacgctacagggcatcgag
cagatcagcaaggtgtacatgcacttgccccagacggacaacaagaagaagatcatcatc
acggaggacggggagttcaaggccctgcaggagtggattctggagacggacggcgtgggc
ctcatgagggtcctcagcgagaaggacgtggaccccgtcaggaccacctccaacgacatc
gtggagatcttcacggtgctgggcattgaggcggtgcgcaaggcgctggagagggagctg
taccacgtcatctccttcgacggctcctacgtcaactaccgccacctggctctgctgtgc
gacaccatgaccagcaggggtcacctgatggccatcacccgccacggcatcaacaggcag
gacacgggcccgctcatgaagtgctccttcgaggagacggtggacgtgctgatggaggcg
tcttcccacggggagagcgaccccatgaagggcgtgtctgagaacatcatgctgggccag
ctggccccggcggggacgggctgcttcgacctgctgctggatgctgagaagtgcaagtac
ggcatggagatccccaccaacatccccgggatcagcgtggctggacccactggaatgttc
tttggctctgcgcccagccccatgagtggcatgtcccctgccatgaccccctggaacacg
ggtgccaccccggcctacggcgcctggtcccccagcgtgggtagcgggatgacccccggg
gcggcaggcttctctcccagcgctgcgtccgatgccagtggattctctcctggctactct
ccagcctggtcccccactcctgggtctcctggctccccaggcccggccagcccctacatc
ccctccccaggagcaatgtctccaaactactcccccacctcccccgcctacgagccccgc
tccccagggggctacacccctcagagccccggctactcccccacctccccctcctactcc
cccacctccccctcctactcccccaccagcccaaactacagccccacctcgccctcctat
tcccccacttctccatcttactcccccacatccccctcctactcccccacctccccctcc
tactccccaacatccccatcttactctcccacctccccttcgtactcccccacctccccc
tcgtactcccccacctctcccagctacagccccacctcccccagctatagcccgacatcg
cccagctacagtcccacctctccctcttactcccccacctccccctcctactcccccacc
tccccatcttactctccgacatccccctcctactcccccacctccccctcgtactccccc
acctcccccagctacagcccatcctcccccaactacaccccgacatcccccagctactcc
cccacctccccctcctactcccccacctcgccctcctactcccccacctcccccaactac
acccccacctcccccaactactcgcccacctccccatcttactcccccacctctccatcc
tactctccctccagccctcgcttcaccccccagtctcccacctacacccccagctcgcct
tcctacagccccagctccccctcctactcccccacctcccccaagtacacacccacctcc
ccctcctacagccccagctctccagagtacacccccacctcgcccaagtactcccccacc
tcgcccaagtactcccccacctcacccaaatactctcccacctcccccacttactcccca
acaacccccaaatacagccctacctcacccacctactcgcccacctcgcccacctacacc
cctaccagtcccaagtactctcccacctcccccacctactctccaacctctcctaagtac
tcccccacctcccccacctactcacctaccagccccaaaggctccacctacagccccacg
tcccctggctacagccccacctcgcccacctacagcctcaccagtccggccatcagcccc
gatgacagcgacgaggagaacaactga
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