Osmerus eperlanus (European smelt): 134010073
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Entry
134010073 CDS
T10927
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04510
Focal adhesion
oep04512
ECM-receptor interaction
oep04820
Cytoskeleton in muscle cells
Brite
Exosome [BR:
oep04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
134010073 (col4a5)
Glycosaminoglycan binding proteins [BR:
oep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134010073 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134010073
NCBI-ProteinID:
XP_062305922
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Position
23:complement(982958..1007871)
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AA seq
1676 aa
AA seq
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METGRTENGFHSDQMWVKGAVSACHGCAAGSKCDCSGVKGGKGERGYPGLQGQPGVPGFP
GPEGPGGPRGEKGYDGPGGPTGPKGIRGPPGLPGFPGTPGIPGLPGQDGAPGPRGTAGCN
GTKGERGFPGTSGYPGTEGRPGPPGLPGQKGDPGDVISSDRFGQKGSLGLPGLPGVPGNP
GPPGLSGPLGPPGPRGNDGRHGPPGPQGPKGNMGLNFQGPKGEKGETGLRGPPGPPGQVG
EQTGPTESEIQRGDKGDIGLPGPTGDVGPPGPPGPSGGQKGEKGEQGEAGKRGKPGKDGD
PGPSGFPGSKGELGGPGLPGRDGDRGDKGDRGFPGPPGVVLGGDTSGRVGPKGEPGFPGS
PGRKGDRGPPGLSGPSGQPGQPGVGSAGQPGQPGFPGDRGPKGEEGQPGIALPGPPGRSG
SPGLQGSPGAPGPPGISSGGGACIGGAPGRPGVQGDRGFQGESGHKGDKGDTCVNCFSNG
SPIPGPQGPAGPPGFPGTPGGPGPKGERGYSGGPGLLGPAGPPGQQGTPGYPGEKGDPGD
AIVADGVRGDKGDTGFPGSPGLPGLDGRPGRDGVPGAPGLKGASGSQQVKGERGPQGEPG
LPGGPGDRGSSGNPGYGPQGPSGEKGVQGVSGRPGTTGTPGAKGEPGQTVAEKGLPGPSG
QNGDPGLPGGPGNPGQPGQPGFPGLPGAKGDPGLSGIGLPGPPGAKGFPGTPGQPGSTGG
PGRPGVDGLPGQPGFPGSKGEPGFGSPGPQGPPGFPGGKGSSGPKGDSGFPGSPGQPGRS
GFDGGPGSKGDSGIPGAPGARGPPGSPSFGSQGLPGAAGPPGPSGSPGFPGGPGAKGDPG
SPGLDIPGLPGDRGSPGFPGSPGSVGAPGGPGGPGRDGLPGLPGAKGDMGVMGSPGPSGG
PGGPGAPGFPGPKGDDGFPGRPGGPGGPGGKGDKGDAGLPGAPGPASPPSLGSKGSKGEP
GAPGFSGLPGQKGISGLPGEPGLPGQDGRPGSSGPSGLKGDAGIPGGPGSPGVPGLKGAM
GEMGFPGPSGLKGAPGQPGRSGSPGGPGAPGFPGAKGDPGLAGAGFPGASGLKGEPGQPG
YPGTTGQKGNPGGPGLPGLPGGPGSKGDPGLPGFQGSPGISGPKGLDGAPGNPGLSGASG
RPGEPGRPGSPGYPGDKGQAGRDGIPGPAGIKGDPGLPGFGGPGSPGLPGIPGAKGDVGL
PGLPGSSGFPGSKGDAGFPGLPGSSGSIGPPGPPGLALQGPKGNPGSPGAPGRGGPPGPE
GPRGPAGSGGIKGEKGIPGASGQPGFPGQKGDMGSPGFSGASGIPGPSGLKGDVGLPGVP
GFPGPKGESGTPGSYGGPGERGDAGEPGLPGDSGVAPAPIVLKGERGPPGIQGQPGERGV
PGGPGREGLNGQPGNPGDLGPEGPPGFSGGPGRKGDPGPAGQPGQRGYPGPRGSDGLQGP
PGSPGGASIAHGFLITRHSQAQDVPFCPDGTSLIYDGYSLLYVQGNERAHGQDLGTAGSC
LRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPQPMPMSMAPITGEGIKPFISRCAVCEA
PAMVIAVHSQTIQIPSCPASWEPLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRSAPF
IECHGRGTCNYFGNSYSFWLATVDSTDMFRKPQSETLKAGNLRTRVSRCVVCMKRT
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atggagacaggcaggacggagaatggtttccatagtgaccagatgtgggtcaaaggtgct
gtttcagcatgtcatggctgtgcggctgggtccaagtgtgactgcagcggagtgaaagga
ggaaagggcgagaggggttacccaggcctccagggccagccaggtgtacccgggttccca
gggcccgaggggcccggtggccccagaggagagaagggttatgatggaccaggaggtcca
actggtccaaaaggaatcagaggaccacctggtctacctggattcccaggaacaccagga
attccaggcctcccaggacaagacggggctcctgggccgaggggtaccgcaggctgtaac
ggcaccaagggtgagcgaggattcccaggaacatcaggctaccctggaacagaaggccga
ccaggtcctcccggtttgccaggccaaaagggtgacccaggtgacgtgatttcatcagac
cgtttcggccagaaaggatcgctgggcctccctggcttgcccggagtccctggcaacccc
ggtccccctggattgagcggccctctcggtccacctggtcccagaggaaatgatggtcgc
cacggccctcctggcccacaaggacctaagggaaacatgggcctgaacttccagggaccc
aaaggagagaagggggagactggactgaggggtcctcccgggcctccaggtcaggttggg
gagcagactggacctaccgagtcagagatccagagaggagacaagggtgacatcgggttg
ccgggccctactggtgacgttgggcctccaggaccccctggcccctcaggtgggcagaag
ggagagaagggggagcaaggagaagctggaaaacgaggcaaaccaggaaaagatggagac
cccggtccatctgggttcccaggtagtaaaggagaattaggaggtccaggtctcccgggt
cgtgatggagacagaggtgacaaaggagatcgtggatttccgggacctccaggggtggtg
ttgggtggagatacgtctggtcgagtgggacctaaaggggagcctggattccccgggtcg
ccgggcaggaaaggagacagaggccctcctggtctctcaggtccttccggacaaccagga
cagccaggtgtaggatctgcaggccagcccggccagccagggttcccaggagacagaggt
ccaaagggagaggagggccagcctggcatcgccctccctggccccccaggacggagtggc
tcccctgggctgcagggttctccgggggcacccggacctccagggatctccagcggtggg
ggggcctgcattgggggggcccccggccggcctggtgtgcagggagacaggggcttccag
ggggaaagtggacataaaggtgataagggtgacacctgtgtgaactgcttctccaacggc
agccccatccccggcccccaggggcccgccggcccccccgggttcccaggaacccctgga
ggaccgggacctaaaggtgaaagaggatactcaggaggcccagggcttctcggacctgct
ggtcctccaggccagcaggggacgccaggttacccaggagagaagggagaccctggggac
gccatcgtggctgacggagtgagaggtgacaaaggtgacacgggcttccctggatctccc
ggtttaccgggtctggacggccgccccggtagagacggggtaccgggagcaccgggactc
aaaggagcgtccggttcccagcaggtgaagggagaacgaggaccacaaggggaacccggt
ctcccgggaggtccaggcgacagagggtcttcagggaacccaggctacggcccccagggc
ccctcgggagagaagggcgtgcagggcgtgtcaggccgtccagggactaccggaacacca
ggagctaaaggcgagccgggccagacagtggcggagaagggcttaccaggaccttctgga
cagaacggagatcccggtttaccaggcggcccaggtaaccctggacagcccggacagcct
ggtttccctgggttaccaggagccaaaggagacccaggtctctctggcattggattacca
ggaccccccggtgctaaaggtttcccaggcacacctggccagccgggcagcacaggaggg
cccggcagacctggggtagacggccttcctggacagcctggctttcctggatccaaggga
gagcctggctttggttcacccggaccccaaggccctcctgggttcccagggggtaaagga
tcctccgggcccaaaggagattccggtttccccggcagcccaggacaacctggacggtct
gggttcgacggcggacccggatccaaaggtgactctggtatccctggagcccccggagct
cgtggcccccctggttccccctcgttcggctcccagggcctccccggggccgcgggcccc
cccggccctagtgggtcccccgggttccccggtgggccaggagcgaagggagacccaggc
tcccctggcctggacatcccagggttgccgggagacagaggttctcctgggttccccggt
tcccccggctcggtgggtgctccgggaggacctggaggaccagggcgtgacggcctacct
ggactgcccggtgccaagggagacatgggtgtgatgggctcccctggaccctctggaggg
cccggaggacctggtgcacctggcttccctggacctaaaggtgatgacggtttcccaggg
cgaccaggtgggcccggaggccccggcgggaagggagacaagggggacgccggccttcca
ggtgcccccgggcccgcatccccccccagcctgggttctaagggttctaagggagaacca
ggagctccaggtttcagtgggctgccaggccaaaagggcatctctggtctccctggtgaa
ccaggtctccccgggcaagacggacgtccaggtagttcaggaccatcaggtcttaaagga
gacgcgggtatccccgggggccctggctctcctggagtcccagggttgaagggggccatg
ggggagatgggcttccctggcccctctggtttgaagggagctcctggtcagcccggccgc
tcagggtccccgggggggcctggagcccctgggttccctggggccaagggagaccccgga
ctggccggagcagggttccctggagcatccggattgaagggtgaaccaggccaaccagga
tatccaggaactaccggacagaaaggaaatccaggcggtcccggcctcccaggcctgcca
ggcggtcccggctccaagggcgacccaggcctgccaggattccaaggttctcctggtatt
agcggtccaaaaggtctggacggtgcccccggtaaccccggtctcagcggagcatccggc
cgaccgggagagccaggccgtcctggttcacctggttaccccggcgacaagggccaagca
ggtcgggacgggatccccggtccagctggaatcaaaggagacccaggtctgccaggcttc
ggtggtcctggatcacccggtctcccagggataccaggagcgaagggagacgtgggccta
cctggtctcccaggcagctcgggcttccccggttccaaaggagatgcagggttccccggc
ctccccggttcctctggcagtattgggcccccgggtcccccagggctggccctccagggg
cccaaagggaacccaggctcccctggcgccccagggcgtggaggtcccccaggtccagag
gggccccgcgggcctgctggtagcggagggatcaagggggagaagggcatccctggtgcc
tccggacagcccggtttcccgggacagaagggagatatgggaagccccgggttctcgggt
gcttctggtattcctggtcccagcggtctgaagggagatgttggtcttcctggcgtcccc
ggattcccagggccgaagggggagtctggtacccccggatcgtacggtggccctggagag
cgcggagacgccggagagcctggtctgccaggagactcgggcgtcgcccccgcccccatc
gtgttgaagggggagcggggccccccgggcatccagggccagcctggagagagaggtgtc
cctggaggccccggacgggagggacttaatggccagccaggtaacccaggagacttgggc
cccgagggtcccccaggattcagtggaggccccggacgcaagggtgaccccgggccggcc
ggacagccaggtcagcgagggtaccccggcccccggggttcagacggcctccaggggccc
ccaggctcccccggtggggcttccatcgcccacggcttcctgatcacccgccacagccag
gcccaggacgtgcccttctgcccggacggcacctcgctgatctacgacggctactccctc
ctctacgtccaggggaacgagagagcccacggccaggatctgggcactgctggcagctgt
ctgcgcaggttcagcaccatgcccttcatgttctgcaacatcaacaacgtgtgcaatttc
gcctcccgcaacgactactcctattggctgtccactcctcagcccatgccaatgagcatg
gcccccatcacaggagagggtatcaagcccttcatcagcaggtgtgcagtgtgtgaggct
cctgccatggtgatcgcggtgcacagccagaccatccagatcccctcctgcccagccagc
tgggagcccctgtggataggatactccttcatgatgcacaccagtgcgggtgcggagggt
tccggccaggccctggcctccccgggctcctgcctggaggagttccgcagcgcccccttc
atcgagtgccacggcaggggaacctgcaactactttggcaactcctacagcttctggctc
gccaccgtggactccactgacatgttcaggaagccccagtctgagaccctgaaggccggt
aacctgcgtacgcgtgtcagtcgctgcgtcgtgtgcatgaagaggacgtaa
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