Osmerus eperlanus (European smelt): 134010982
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Entry
134010982 CDS
T10927
Symbol
rorca
Name
(RefSeq) RAR-related orphan receptor C a
KO
K08533
RAR-related orphan receptor beta
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oep03000
]
134010982 (rorca)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
oep03310
]
134010982 (rorca)
Transcription factors [BR:
oep03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
134010982 (rorca)
Nuclear receptors [BR:
oep03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
134010982 (rorca)
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
134010982
NCBI-ProteinID:
XP_062306327
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Position
24:complement(2093956..2107973)
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AA seq
472 aa
AA seq
DB search
MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRNCLIDRTNRN
RCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQSQERASAAAREEASELGS
HGRAYSRGSSTAFSDLDDITTLPEGLLFDLPLTPEGAGGEYCNLEMLGGSGGSSSSSQSS
PEQSGLDFGDHHVKHEYQLLHESGIFAHGLLNPLPEGCSLMEIERITQSVLKSHVETSQY
SSEELKRLAWTLYSQEETRSFQTKSVDVMWQQCAHHLTNSIQYVVEFAKRITGFMDLCQN
DQIILLKAGCLDVLLIRMCRSYNPINHTLLFDGKFASAQLFKALGCDDLVGAVYDLARSL
SRLQLSEEEMALFSAAVLLSPDRAWLSDTQQVQKLQENMYLALQHSLQRGGCSEEKLTKM
VSKMPMMKSICNLHIDKLEFFQILHPETAYSFPPLYREVFGSQIAFPDSTEG
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgagagctcagattgaagtgataccctgtaagatctgtggtgacaagtcctcaggaatc
cactatggtgtcatcacctgtgagggctgcaagggcttcttccggcgcagccagcagaac
aacgccatgtactcctgctctcgccagaggaactgtctgatcgaccggaccaaccgcaac
cgatgccaacactgccggctgcagaagtgtctggctctgggcatgagccgcgatgcggtc
aagttcggccgcatgtcaaagaagcagcgagacagcctgtacgccgaggtccagaagcac
cagcagtcccaggagcgagccagcgccgctgcccgcgaggaggcgtccgagctgggctcc
cacggccgtgcctacagccggggctccagcaccgccttcagcgacctggacgacatcacc
accctgccggaaggcctgctgtttgacctgcccctgacaccagagggcgccggaggggaa
tactgcaacctggagatgctgggaggcagtgggggaagcagttcctcgtctcagagctcc
cctgagcagagcggcctggacttcggagaccatcacgtcaaacacgagtaccagctgctg
cacgagtcgggcatcttcgcccacggcctcctcaaccccctgccggagggctgctctctg
atggagatagagcgcatcacccagagtgtgttgaagtcccatgtggagaccagccagtac
agctccgaggaactgaagaggctggcctggacgctgtactcccaggaggagacacgctcc
ttccagaccaagtctgtggacgtgatgtggcagcagtgtgcccatcacctcaccaactcc
atccagtatgtggtggagttcgccaagcgcatcaccggcttcatggacctctgtcagaac
gaccagatcatcctgctcaaagcaggctgcttggatgtcctcctcatccgcatgtgtcgt
tcctacaaccccatcaaccacactctgctcttcgatggcaagtttgcaagtgctcagctc
ttcaaggctctcggctgtgacgacctggtcggcgccgtgtacgacctggccaggagcctg
agccgcctgcagctctctgaggaggagatggctctgttcagcgccgccgttctgctgtca
ccagaccgggcctggctgagcgacacccagcaggtccagaagctgcaggagaacatgtac
ctggctctgcagcacagccttcagagaggaggctgctccgaggagaagctcaccaagatg
gtgtccaagatgcccatgatgaagtccatctgcaacctgcacatcgacaagctggagttc
ttccagatcctccacccagagacggcctacagcttcccccctctctaccgcgaggtcttc
ggcagtcagatcgctttcccagactccaccgagggctag
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