Osmerus eperlanus (European smelt): 134011035
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Entry
134011035 CDS
T10927
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04010
MAPK signaling pathway
oep04020
Calcium signaling pathway
oep04144
Endocytosis
oep04510
Focal adhesion
oep04540
Gap junction
oep04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
134011035 (pdgfra)
04020 Calcium signaling pathway
134011035 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
134011035 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
134011035 (pdgfra)
04540 Gap junction
134011035 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
134011035 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
oep01001
]
134011035 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
oep04090
]
134011035 (pdgfra)
Enzymes [BR:
oep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
134011035 (pdgfra)
Protein kinases [BR:
oep01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
134011035 (pdgfra)
CD molecules [BR:
oep04090
]
Proteins
134011035 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Ig_3
Pkinase
I-set
Ig_2
ig
V-set
VEGFR1-3_N_Ig-like
VEGFR-1-like_Ig-like
C2-set_2
Motif
Other DBs
NCBI-GeneID:
134011035
NCBI-ProteinID:
XP_062306427
LinkDB
All DBs
Position
24:complement(5680744..5698680)
Genome browser
AA seq
1471 aa
AA seq
DB search
MAGMKTLLVVGVVLFGFISVTYGILSPTIASNKEEFVLERHSVFNVSCIGKRSVVWVEPL
PDNTFVNPGYNTSTLFINNASVANTGYYSCRYRTLDDQDENNEQDYEAEIYIYVPDPAAP
FVPEEPENLMVPAIVGETFIPCRVSDPASQVTLRSVPGEEEVLAPYDSRMGFVGSMPAGL
YQCETVVDGVIVHSDTYRVEDSTGEEAFQVEVGASEEAVRLGQAVNITCLAPPGPAFQQQ
WLHPKKQAVRAVAMKEILTNQVLYILRIPEATSQDSGVYECVVVNDDSGEIRTGRVVVTV
FEENSFISLEHAGIGAVEFASLLVESEFTILIHASPAPQVTWYKDGSELAGSSYVLTKTT
PLQVSPLQATPLQGHRYQSVLTLRQPLEADSGNYTIMALAGSQSQHFSFTLKVKASGSVA
FQPSSAPLLLPRVEQMQVPLNAPFTLTCHGEAELEWDTPLYLPQQTEEDNSGLFVTTVTV
EDATAMHTGAYTCFYHHGNGSEETQSSIYVYVPDPEVPFLPSLVPYSNHVLTDQKEMEIG
CRVSDPGTNVTLVNADTQQEVPSSYDSRRGAVGLFNPGTYACRAVINDEEHYSEEYIVHG
WVEGAGGLEVELRAPRKALLVGETLTVSCLARGSSEILEDQWKYPGRQTNRGVKSVRENK
REQEIQYTLTIGQASAKDSGSYACTITDIISDKTQTMELVINVYESAFVSLRPSFSPRET
AELDEVREFRADIESFPDARVTWLKDGRPLDDVAAEISSSLRKVGDTRYQSTLTLIRAKQ
EDSGNYTLRLDNGNLSTTHSFSLQVKVPAVIVDLMDLHHGSSLGQAVVCIAGGQPTPELE
WFICSNIKHCANDSSQWVPLPANSTEITVETHLDADLQLESQVMFGRLDNTLAVRCLARN
EMAVVSREVKLVSNGPHSELTVAAAVLVLLVIVIISLIVLVIIWKQKPRYEIRWRVIESV
SPDGHEYIYVDPMQLPYDSRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSHSQPVMKVA
VKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKTGPIYIITEYCFYGDLVNY
LHKNRESFLSVHPEKSKKDLDIFGINPVDESNRSYVVLSFEGRGDYMDMKQVDTQYVPML
EINDPSKYSDIQLSSYDSPPSPRQREGEVDSLLPDDNSKGLSTTDLLSFSYQVARGMEFL
ASKNCVHRDLAARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFD
NMYTSLSDVWSYGILLWEIFSLGGTPYPGMVVDSSFYNKIKSGYRMAKPEHAAAHVYEMM
MKCWNSEPEKRPSFLSLSESVASLLPASYKRSYERINHDFLKSDHPAVTRVCVESDDAYV
GISYKNQGKLKSREEQEQRLSSDSGYIIPLPDLEPDLGYSKRNRHSSQTSDESAIETGSS
STLARREGETLEDITLLEELHSGDLEEDSFL
NT seq
4416 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcatgaagacccttctcgtggtgggggtagtgctgtttgggttcatatcagtt
acatacggaatactttcgccgaccatcgcatccaacaaagaagagttcgtcctcgagcgg
cattccgtttttaacgttagctgtatcgggaagaggagcgtagtgtgggttgaacccttg
ccggacaacacatttgtgaatcccggatataacacatccacgctcttcataaacaacgcc
tccgttgccaacaccggatactactcctgtagataccggaccttagatgaccaagatgaa
aacaacgagcaggattacgaggcagagatatacatctatgttccagatcctgctgctccc
ttcgtcccggaggagccggaaaacttgatggtgccggcgattgtgggtgagacgttcatc
ccgtgccgcgtgtccgacccggcctcccaggtcacgctgcggagcgtgcccggtgaggag
gaagtgcttgccccgtacgacagcaggatggggtttgtgggcagcatgccggcaggactg
taccagtgtgagaccgtggtcgacggggtcattgtccacagtgacacctacagggtggag
gacagcacaggcgaggaggccttccaggtggaggtgggggccagcgaggaggctgtgagg
ctgggacaggccgtcaacatcacctgccttgcccctccgggaccagccttccagcagcag
tggctccaccccaagaaacaggctgtcagagcagtggcgatgaaggagattctgaccaat
caggtgctctacatcctccgtatcccagaagccacctctcaggacagtggagtctacgag
tgcgtcgttgtcaatgacgacagcggggagatccgcacaggcagagttgtggtcaccgtc
ttcgaggagaactcgttcatctccctggagcatgctgggataggagcggtggagttcgcc
agcctgctggtggagtcagagttcaccatcctgatccacgccagccccgccccccaggtc
acatggtacaaggatggcagcgagctggcgggaagcagctacgtcctgaccaagaccacg
cccctccaggtctcgcccctccaggccacgcccctacagggccacaggtatcagagtgta
ttgacgctgaggcagcccctagaggctgacagtgggaactacaccatcatggccctggct
ggctcccagtcacaacacttctccttcacgctgaaggtcaaagcgtcgggctccgtggcg
ttccagccctcctccgcccccctcctcctgccccgggtggagcagatgcaggtccccctc
aacgcccccttcaccctcacctgccacggggaggcggagctggaatgggacacgcccctc
tacctgccccagcagacggaggaggacaacagcggcctgttcgtcaccacggtgaccgtg
gaggacgcaacggccatgcacacgggcgcctacacctgtttctatcaccacggcaacggc
tcggaggagacgcagagcagcatctatgtctacgtgccggaccccgaggttcccttcctg
ccctcgctggtgccctacagcaaccacgtcctgacggaccagaaggagatggagatcggc
tgccgcgtgtccgaccccggcaccaacgtcaccctggtgaacgccgacacccagcaggag
gtcccctcctcctacgacagccggcgcggcgccgtgggcctgttcaacccgggaacctac
gcctgccgggcagtgatcaatgacgaggagcactacagcgaggagtacattgttcacggg
tgggtggagggcgccggggggctggaggtggagctccgggcccccaggaaggccctgctg
gtgggggagaccctcaccgtgtcctgcctggcgcggggatcctccgagatcctggaggac
caatggaagtaccccggcagacagacgaaccgcggcgtgaagtcagtgcgggagaacaag
cgcgagcaggagatccagtacacgctgaccatcggccaggcgtctgccaaggacagcggc
tcctacgcctgcactatcaccgacatcatcagcgacaagacgcagaccatggagctggtc
atcaacgtctacgagagcgcctttgtgtctctccgcccctccttcagcccgcgggagact
gcggagctcgacgaagtgagggagttccgggcggacatcgagtccttccccgacgcgagg
gtcacctggctgaaagatggccgccctctggacgacgtggcggcagagatcagcagcagc
ctgcggaaggtcggcgataccaggtaccagagtactctgaccctgatccgggccaagcag
gaggatagtgggaactacactctgcgactggacaacggcaacctgagcaccacccacagt
ttcagcttgcaggtcaaagttcctgctgtgatcgtggatctcatggacctgcatcacggc
tcctcgctcggtcaggccgtggtgtgcatcgctgggggacagcccacacctgagctggag
tggttcatctgcagcaacatcaaacactgtgccaacgactcctcccagtgggtgcccctc
ccggccaactccacggagatcaccgtggaaacgcacctggacgccgacctccagctggag
agccaggtgatgttcggtcgtcttgacaacacactggccgtgcgctgcctggccaggaac
gagatggccgtcgtcagcagggaggtcaagctggtgtctaatggccctcactcagagctg
acggtggctgcagcagtgttggtgttgctggtcatagtcatcatctctctcattgtgctc
gtcatcatatggaaacagaagcctcgatatgaaatccgctggagggtgatcgagtctgtg
agtccagacggccatgagtacatctacgtggaccccatgcagctgccctacgactcccgt
tgggagttccccagagacggcctggtgctaggccgcatcctgggctccggggccttcggg
aaggtggtggaagggacagcctacggactcagccactcccagccggtcatgaaggtggct
gtgaagatgctgaaacccactgcgcgctccagtgaaaagcaggccctgatgtcggagctg
aagatcatgactcacctgggccctcacctgaacatcgtcaacctgctgggggcttgcacc
aagacaggtcccatctacatcatcactgagtactgtttctatggcgacctggtgaactac
cttcataagaacagggagagcttcctaagtgtccatccggagaaatccaagaaggacctg
gacatcttcggcatcaaccctgtggacgagagcaacaggagctatgtggtcctgtccttc
gagggcagaggagactacatggacatgaaacaggtggacacgcagtacgttcccatgctg
gagatcaacgatccctccaaatactccgacattcagctctccagctacgacagcccgccc
tcgccgagacagagagagggcgaggtggacagtctgctgccggacgataacagcaagggt
ctgagcaccaccgacctgctcagcttctcctaccaggtggcccgcggcatggagttcctg
gcctccaagaactgtgtgcacagagacctggctgccaggaacgtgctgctgtcccagggg
aagatagtgaagatctgtgactttggtctggccagggacatcatgcatgacaacaactat
gtctccaagggcagcacgttcctgccagtgaagtggatggctcctgagagcatctttgac
aacatgtacaccagcctgagtgacgtctggtcctatggcatcctgctttgggagatcttc
tctctgggtggaaccccctaccctggtatggtggtggactccagcttctacaacaagatc
aagagtggctacaggatggccaagcctgagcatgctgctgcccacgtgtatgagatgatg
atgaagtgttggaacagcgagccagagaaaaggccctccttcctcagcctcagcgaatca
gtggcctccctgctgcccgccagctacaagaggagctacgagaggatcaaccatgatttc
ctgaagagtgaccaccctgcggtgacgcgcgtgtgcgtggagagcgacgacgcctacgtg
ggcatcagctacaagaaccagggcaagctgaagagccgggaggagcaggagcagcgtctg
agctcggacagcggctacatcatccccctgcccgacctggagcctgacctgggctacagc
aagaggaaccgccacagctcccagacgtcggacgagagtgccatagagactggtagcagc
tccacgctggcccgcagggagggcgagaccctggaggacatcaccctgctggaggagctc
cactctggggacctggaggaggacagcttcctgtga
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