Osmerus eperlanus (European smelt): 134011749
Help
Entry
134011749 CDS
T10927
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
134011749 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oep03021
]
134011749 (smarca2)
03036 Chromosome and associated proteins [BR:
oep03036
]
134011749 (smarca2)
Transcription machinery [BR:
oep03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
134011749 (smarca2)
Chromosome and associated proteins [BR:
oep03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
134011749 (smarca2)
Chromatin remodeling factors
BAF complex
134011749 (smarca2)
PBAF complex
134011749 (smarca2)
GBAF(ncBAF) complex
134011749 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
134011749
NCBI-ProteinID:
XP_062307155
LinkDB
All DBs
Position
25:4026809..4044109
Genome browser
AA seq
1582 aa
AA seq
DB search
MSTSTDLTGSMSHPGQSPGAGQSPGPVLGPSPGPGPSPGSVHSMMGPSPGPSSGPYTMQN
QGGGDYSQDNVYPMHKPMEGMHDKTMVDEIHYGQMKGVGMRSLHSGMGPPRSPMDQHSQG
YLSPHPSPMAVHEHTTSPMSGGGGPTPPQMPPTQSGPLVPMDPQAAMPMGPQGRGPSSFS
PVQLQQLRAQILAYKILGRGQPLPENLQLAVQGKRSLPTMQQQSPASANLYNRPPVMLMP
PVGGTQSSPCPTTAMQGHAQSAGSKQPHEGLSSDSSCNPQKLLAPSASGRPSPAPIQPPV
VPPGPMPGPSTAQPALGQPSPILQMQQKQNRITPIQKPQGLDPVEILQEREYRLQARIVH
RIQELESLPGSLPPDLRTKASVELKALRLLNFQRQLRQDVVACMRRSTTLETALNSKAYK
RSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEFHRSMAGKIQKL
SKAIATWHTNTEREQKKEAERIEKERMRALMNEDEEGYRKLIDQKKDKRLAYLLQQTDEY
VSNLTDLVYEHKAAQAAKEKKKKKKKKKKRKNVDGDGDVASAIGPDGEPMDESSQMSELP
VKVIQTETGRVLQGTDAPKSSQLEAWLEMNPGYEVAPRSDSEESGSEFEEEDEEEVFSRA
ESEEKKILDPNTDEEFATKHIIESAKQDVDDEYSVPTGETSTQSYYGVAHAIMERVEKQS
SLLINGTLKHYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMENKRLNGPF
LIIVPLSTLSNWAYELDKWSPSIIKIAYKGTPAMRRSLVPQLRCGKFNVLLTTYEYIIKD
KQILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRILLTGTPLQNKLPELWALLN
FLLPTIFKSCNTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVES
QLPEKVEYVIKCDMSAIQKVLYRHMQKGILLTDGSEKDKKGKGGAKTLMNTIMQLKKICN
HPYMFQHIEESFAEHLGYPNGVISGHDLYRASGKFELLDRILPKLHATNHRVLLFCQMTS
LMTIMEDYFAYRNFLYLRLDGTTKSEDRAALLQKFNEKGSQYFVFLLSTRAGGLGLNLQA
ADTVVIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLCTVNSVEEKILAAAKYKLNVDQK
VIQAGMFDQKSSGQERRVFLQAILEHEEQNEVGEDVHKQEMEEDEVPDDETLNQMIARSE
DEFEQFMRMDMDRRREDARNPKRRPRLMEEDELPSWIIKDDAEVERLTYEEEEDKIFGRG
SRSRRDVDYSDALTEKQWLRAVEDGNLEEMEEEIRVKKRKRRRRQDKDPERDEGAPKAKK
RRGRPPAEKLSPNPPKLTKQMNGIIDTVINYKDGSGRQLSEVFVQLPSRKELPEYYELIR
KPMDFKKIKERVRNHKYRSVGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQ
RIVKEEESEEDSEEEEDEDEDSENESTSVRVKIKLSKKDEHGGDKGKKRQSRSKAKPVVS
DDDSEDDKEDNDQSDESRSDDE
NT seq
4749 nt
NT seq
+upstream
nt +downstream
nt
atgtccacttctaccgacctgactgggagtatgtcccatcctggtcagtctccaggggcg
gggcaatccccagggcctgtcctgggacctagccctggtccaggtccttctcctggctcg
gttcacagtatgatgggccccagccctgggccttccagtgggccttataccatgcagaac
caaggagggggggactactcccaggacaatgtgtaccccatgcacaagcccatggaagga
atgcatgacaagaccatggtagatgagatacactatggtcagatgaagggagttgggatg
aggtctctccacagtggcatggggccaccacggagtcccatggaccagcacagccaagga
tatctgtccccccatccctctccaatggcggtccacgagcacaccaccagcccaatgtca
gggggtgggggtccaacaccgcctcagatgccacccacccagtcgggccccttggtgccc
atggacccccaggcagccatgcctatggggccgcaggggcggggcccctcctccttcagc
cctgttcaacttcaacagctacgggcccagatcttggcctataagatcctggggcggggc
cagcccttgccggagaacctgcagctggctgtgcaaggaaagaggagccttcccaccatg
cagcagcagtcgccagcgagcgccaacctctacaacagacctccagtcatgctaatgcca
ccagttggcggtacccagtcaagcccctgccccaccactgccatgcaaggccatgcccag
agtgctgggtccaaacaaccacatgaaggcctgagcagcgattcttcctgcaaccctcag
aagctccttgccccgtccgctagtggacgaccatctccagctccaattcagcctccggta
gtgccacctgggcccatgcctggcccctctactgcccagccggccctggggcagccatcg
cccatccttcagatgcagcagaaacagaaccgtatcacgcccatccagaagccccaaggg
ctggaccctgtggagatcctgcaggagagagagtacaggctgcaggctaggatcgtccac
cggatccaggagctggagagtctcccaggctctctcccaccggacctgaggacgaaagcc
tctgtggagctgaaagccttgcgactgctcaacttccaacgccagctgaggcaggatgtc
gtggcctgcatgcgcaggagcaccacgctagagacggcgctcaactccaaggcctacaag
cgcagcaagcggcagaccctgagggaggcgcgcatgacggagaagctggagaagcagcag
aagatcgagcaggagcggaagcggcgtcagaaacaccaggagtacctgaatagcatcctt
cagcatgccaaggatttcaaagaattccacaggtccatggccggaaagatccagaagtta
tccaaagccatcgccacctggcacaccaacaccgaaagagagcaaaagaaggaggccgag
agaatcgagaaagagcgaatgagagcgctcatgaacgaggatgaagagggctaccgtaaa
ctgatcgaccagaagaaagacaagcgtctggcctacctgctgcagcagaccgacgagtat
gtgtccaacctgaccgacctggtgtacgaacacaaagccgcccaggctgccaaggagaag
aagaagaagaaaaagaagaagaagaagagaaagaacgtggatggggatggtgacgttgcg
agcgcaattggacctgacggagaacccatggatgagagcagccagatgagtgaacttcct
gtcaaagtcattcagacggagactggaagagttctccaagggaccgacgcccccaagtcc
agccaactggaagcctggctagaaatgaaccctggatatgaagttgcccctcgatcagac
agtgaggagagtggctctgagtttgaggaagaggatgaggaggaggttttctccagagcg
gaatctgaggagaagaaaatccttgatccgaacaccgacgaagagtttgcaaccaaacac
attattgagtcggccaaacaagatgtggatgacgagtacagcgttcccactggagagacc
tccacgcagtcctactatggagtggctcatgccatcatggagagggtggagaagcagtcg
tccctgctgattaatggaacgctcaaacattaccagatccaaggactggagtggatggta
tcattgtacaacaacaacctaaacggcatactggctgacgagatgggccttggcaagact
attcagaccattgccctcatcacctacttgatggaaaacaagagactgaacggaccattt
ttaatcattgtcccgctttcgaccttgtcaaactgggcttacgagcttgataagtggtcg
ccgtccataatcaaaattgcctacaagggcacccctgctatgcggaggtcacttgtacct
cagctccgttgtgggaagttcaacgttctccttaccacgtacgagtacatcatcaaggac
aagcaaatcctcgccaagatccgttggaagtacatgattgtggacgaaggccatcgcatg
aagaaccaccactgtaagctgacccaggtcctgaacacccactacctggccccaagacgc
atcctcctgacaggcacgcccctccagaacaagctgcccgagctgtgggcgctgctcaac
ttcctcctgcccaccatcttcaagagctgcaacacctttgagcagtggttcaacgctccc
tttgccatgacgggagaaagggtggacctgaacgaggaggagaccattctgatcatccgc
cgcttacacaaggtgcttcgtccgttcctgttacgaagactgaagaaggaagttgagtct
cagttgccagagaaggtcgagtatgtcatcaaatgtgacatgtctgccattcagaaggtt
ctttaccgccacatgcagaaaggcatcctcctcaccgatggttcagagaaggacaagaag
ggcaaaggaggagccaagaccttgatgaatactattatgcagctgaagaagatttgcaac
cacccctacatgtttcagcacattgaggagtcttttgccgaacacttgggttatcccaac
ggcgtcattagcggtcacgatctgtaccgggcatctggcaagtttgagcttctggaccgc
atcttgcccaagctccacgccaccaatcacagggtgctgctcttctgtcagatgacctcc
ctcatgaccatcatggaggactactttgcataccggaacttcctctacctgcgtctcgac
ggtaccaccaagtcagaagatcgggctgcgctgctccaaaagttcaacgagaagggatct
cagtacttcgtcttccttctgagcaccagagctggaggtttgggcctcaacctgcaggct
gcagacaccgttgtcatcttcgacagcgactggaaccctcaccaggacctccaggcccag
gatcgcgcccaccggattgggcagaagaacgaggtgcgcgtgctgcgtctgtgcacggtc
aacagcgtggaggagaagatcctggcggcggccaagtacaagctgaacgtggaccagaag
gtcatccaggcgggcatgttcgaccagaagtcctcaggccaggagcgccgtgtcttcctc
caagccatcctggagcacgaggaacaaaacgaggtcggtgaagatgtgcacaaacaggaa
atggaggaggacgaggtccctgatgatgaaaccctcaaccagatgatcgcccgaagcgaa
gatgagtttgagcaattcatgcgcatggacatggaccgtcgtcgcgaggatgccaggaac
cccaagcgaaggccccgtctgatggaggaggacgagctgccatcctggatcatcaaggac
gacgcggaggtggagcggctgacctatgaagaggaggaggacaagatcttcgggcgtggc
tcgcgcagccgacgggacgtggattacagcgacgcgctgactgagaaacagtggctgcgg
gccgtcgaggacgggaatctggaagaaatggaggaggagatccgggtaaagaaacgcaag
cgcaggagacgccaggacaaggacccggagagggacgagggggccccgaaagccaagaag
cgccgcggacgcccacccgcagagaagctgtcccccaaccctcccaaactcaccaaacag
atgaatggcatcatcgacactgtcatcaactacaaagatgggtcagggcgccagctaagt
gaggtatttgttcaactaccgtcaagaaaggagcttccagaatactatgagctgatcagg
aaacctatggatttcaagaaaatcaaggaacgtgtaaggaaccataagtaccggagtgtg
ggggacctggagaaagacgtgatgttgctctgccataatgcccaaacgttcaatctagaa
ggttcccagatctatgaagattccatcgtgctccagtcggtcttcaaaagtgccagacaa
agaattgtcaaggaggaggagagtgaagaggacagcgaggaggaagaggatgaggacgaa
gactctgagaatgagtccacgtcggtgcgcgtgaagataaagctgagcaagaaggacgag
cacggcggtgacaaaggcaagaagcgccagagccggagcaaagccaagccggtggtcagt
gacgacgacagcgaagacgacaaagaggacaacgaccaatccgacgagagtaggagcgat
gacgagtga
DBGET
integrated database retrieval system
