KEGG   Osmerus eperlanus (European smelt): 134012123
Entry
134012123         CDS       T10927                                 
Symbol
tnrc6c1
Name
(RefSeq) LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6C protein
  KO
K18412  trinucleotide repeat-containing gene 6 protein
Organism
oep  Osmerus eperlanus (European smelt)
Brite
Messenger RNA biogenesis [BR:oep03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     134012123 (tnrc6c1)
Chromosome and associated proteins [BR:oep03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    134012123 (tnrc6c1)
SSDB
Motif
Pfam: TNRC6-PABC_bdg M_domain Ago_hook UBA_7 UBA RRM_1 RRM_occluded UBA_NBR1_C THOC7
Other DBs
NCBI-GeneID: 134012123
NCBI-ProteinID: XP_062307784
LinkDB
Position
2:complement(9107361..9147104)
AA seq 1904 aa
MEEKKKKKQEEKKKDAAQKKATEQKTKVPDSAKPSPTPPPPPANPIAAPSVPSTSSGNGK
RPPGGAQPTQQQTPSQPPQRYPAREVPPRFRQQEHKQLLKRGQPLPPGTLPPAPGRPEAT
ATHSPPNHSAASLPTEPPPQSGLGAQYENPHWGQPPTNRSIPSSTASTNHSSWDQLIIAE
NDTEAWPSICRSESQSRHTLPGGCGVDTDAGGPASSSSSSLSMATGANGQTGHFPANHPS
SKASSAPGLANHTGAAVVSSQAAANRGWGSGPVPSHCSPQSSVGGGDGKSDGPMGGGPGW
GSGSSSASNFNLNLNPNANPSAWPVLGHDGGGAGGGSSGGANSPPQPPPSLCNPPGAPSA
QGNTNGNAGAVGGANSNLTGSGSAWGGIMPSDPMELLSSPSTNVSFSTEPPNLNTDGPNH
TSKQEPPSPIHSLSSWGGGHMGMPPPGAPQVNGEEGSSVWGSNEDPKPASAKEALGWDSG
SGWGSGGGSGGGWGTQASGEWGKRPSGEAPGWEAPGSPPQDQQASSWNRAPSNAGASEGS
SSDGADGHSRHRDRPTRDEPAPLLPTPDLDPRVLCNTGWGQTPVRQHTTWDMEEAARLKS
KNDSGADSWGSGPNTPTDTQGPPNLGPPPRAERGGKSEGPGPQGAQGWGGSMPTTNPANS
GWGEPASIKKPSNNGPGGWGNPPLGGHGTNIPKSGVQSWGEEKSPSRDEPHSKASKPQGW
GDQAKPSQGWGNGPGGGGNNNGGDWGEPGDGKKNTPSNPPWEGEAGGWKESSRGWGKPGP
GVAGGWGDTGAPRPSGPAQGWGGKPQEGPNGNSGGGGSMGSWGGTGSVKQGGASSWGGGG
GGKPDPSGGGEPTGWEEPSPPSIRRKMEIDDGTSAWGDPTAYNKAVNLWDKNNPGTAKGK
APPGGGGSSKPPGPVNNINNHPHAHPYHGPPPPLQSHGHNPQNPGSNSGPMDTAGPHLAG
PHLAGPPHSRPPLMAPGWGEPPASHSKAEPSWGEPAGPPVSLDNGTSAWGKPTGSHGGWG
DNGPDTYGRGNPPLGPAPCKPAPKSMQDGWGGGGEEMGMSGGQWDTDDGDMWNSTASQEN
NSWGNGPKKGPPKGKVPSKQEDAWIMSRLTKQLTDMGFPRDPAEEALKSNNMNLDQAMSA
LLEKKTELDKRGGMGGMSDYNNGLINKPMACRPPLPSSDRSPFLDKVVASPXYTHTHTHS
HTRTSLPSNVKLTTKGRXTETQKWLSRLXRVLRCGCPQMQSGMFGSSGAAQARAMQQQQQ
LPPAPQPSVPPLSSSQPSLRAQVPQFISPQVQAQLLQFAAKNIGLNPALLTSPINPQHMT
LLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPIRQQEQQVARTINNMQQQIQQHQRQLAQA
LLMKQQQQPPSHSGLHAGHSAGKSALDSFPGHPQAPGLPDLQTKEPQSSPNSYSPYPLSG
LNPNMNVNCMEVGGLSMKEPPQPQSRLSQWTHPNSMESLSGSSSPLESNLGKHGANLCPP
GKPPLDDSYSPYNMMPGSDSPTSPLVPPDSWGQGKTSNDKMANGTNITWPPEFCPGVPWK
GLQNIDPENDPNMTPGSVPSGPTINTNIQDVNRYLLRDRSGGSSPTSSQNEALPPAPDWP
VSAYSSSFSLSSPETDDPGKLSDMKSTWSPGPISHTQASLSHELWKVPQGPRNTTAPSRP
PPGLTNTKPPSSTWGGNSLGLAQGWSSSYTSAGTTWSTDSSTRTSSWLVLRNLTPQIDGS
TLRTLCMQHGPLITFHLNLTQGNALVRYSSKDEAAKAQKSLHMCVLGNTTILAEFAGEEE
VNRFFAQGQSLGATTSWQANPGTNQTRMGGNGHGAQHPIGHWNSGGGGCLGGGGPKTGGE
LLWGGVPQYSSLWGPPSGEEGRVMGSPTPINTLLPGDLLSGESM
NT seq 5715 nt   +upstreamnt  +downstreamnt
atggaagaaaagaaaaagaaaaagcaagaagaaaagaaaaaggacgccgctcagaaaaag
gccactgaacagaaaaccaaagtgccagactctgccaagcccagccccacccctcctcct
ccccccgccaaccccattgcagccccgtccgtgccctccaccagcagtggcaatggcaag
cgcccccccggtggtgcccagccgacacagcagcagaccccgagccagcccccacagcgc
tacccggccagagaggtgcctccgcgcttccgccagcaagagcacaagcaactgttgaag
aggggccagcccctgccccccggcaccctgccccctgccccagggcgccctgaggccacc
gccacccactcgccaccgaaccactctgcagccagcctgccaacagaaccgcccccacag
agtggcttgggagcccagtatgagaacccccactggggacagccaccaaccaatcggagt
atccctagcagcacagcttccaccaatcacagcagctgggatcaactaatcatcgccgaa
aacgacacagaggcgtggccctctatctgccgcagcgagagccagagccgccacaccctt
ccaggaggatgcggggtggacactgacgcaggtggaccggccagcagtagcagcagtagt
ttgagtatggccacgggggctaacggccagactggccacttccctgccaaccaccccagc
agcaaagccagctctgcgcctggcctagccaatcacaccggggccgccgtggtatccagc
caggccgcagccaatcgtggctggggatccgggcccgtgccctcccactgctctcctcag
tcctcagtggggggcggggacggcaagagcgacgggccaatgggaggaggcccgggctgg
ggctccggctcctcgtctgccagcaattttaacttgaacctgaacccgaacgccaacccc
tcggcctggcctgtgctggggcatgatgggggcggcgctgggggaggcagctcgggggga
gccaactcccctcctcaacccccacccagtctctgtaacccgcccggcgccccatccgcc
cagggaaacaccaacggcaatgctggagccgtgggcggcgccaacagcaacctgacggga
agcggcagcgcctggggcggcattatgccctccgaccccatggagcttctctcctcccct
tccacgaatgtgtctttcagcaccgaacctccgaatcttaacactgacggaccaaatcac
actagcaagcaagagccgcccagccccatccacagtctgtccagctggggggggggccac
atgggcatgcccccgcccggagctccccaggtcaacggagaagagggcagctctgtgtgg
ggcagcaacgaagaccccaagcctgcctctgccaaggaggccttgggctgggactctggg
tccggatggggcagcggaggaggcagcggaggaggctgggggacccaggccagtggagag
tggggcaagcggccatcaggggaggcccctggctgggaggccccaggctcccctccccag
gaccagcaggcgagctcctggaaccgagcaccgagcaacgctggtgccagtgagggcagc
agcagtgatggtgccgatgggcactcacgccatcgcgaccgccccaccagggatgagcca
gccccgctgctgcccacccctgacctggacccccgggtgctgtgcaacacaggctggggc
cagacccctgtccgccagcacaccacctgggacatggaggaggccgctcgcctcaaaagc
aagaatgactcgggggccgactcttggggttcgggccccaacacccccacagacacccaa
gggcctcccaacctcgggccccctcccagggctgaacggggtggcaagagtgaggggcct
ggtcctcagggtgcccaagggtggggcggcagtatgcctaccaccaacccagccaactct
ggctggggagagcccgccagcatcaagaagccctccaacaatggcccagggggctggggt
aaccctccactagggggccatggtaccaacatccccaaaagtggagtccagtcctgggga
gaggagaagtcccccagcagggacgaacctcacagcaaggccagtaagccccagggatgg
ggagaccaggccaagccatcccaaggatggggcaatggtcctggaggtggtggtaataac
aatggaggagactggggagaacctggagatgggaagaagaacaccccctcaaacccaccc
tgggagggagaggcaggaggctggaaggaaagctcccgaggctggggtaagcctggccca
ggagtggctgggggctggggagacacaggggccccgcgccccagtggccctgcccaagga
tgggggggcaagccccaggaggggcccaatggcaatagtggaggaggggggagcatgggc
tcatgggggggcactggctcagtgaagcagggcggagcctccagttgggggggcggcggc
ggcggcaagccggacccttcaggaggaggagagcccaccggctgggaggagccttcccca
ccttctatccgacgcaagatggaaatcgacgacggtacctcagcctggggcgaccctacc
gcctacaacaaggcagtcaacctgtgggacaagaacaaccctgggacagccaagggcaaa
gcaccccctggtggaggaggaagcagcaagcccccagggcctgtcaacaacatcaacaac
caccctcacgctcacccctaccacggtccaccaccacccctgcagagccacggccacaac
cctcagaaccccggaagcaacagcggccccatggacacagcaggacctcacctggctgga
cctcacctggctggacctccacacagcagacctcccctcatggctccaggctggggagag
ccacccgcctcccactccaaagccgagccctcctggggggagcctgcgggacccccggtc
agcctggacaacgggacgtcagcctggggcaagcccaccggcagtcacgggggctggggg
gacaacggccccgacacctatggcaggggcaaccctcccctcggacctgcaccctgcaaa
ccagcccccaaatctatgcaagacggctggggtggcggaggggaagagatgggtatgtca
gggggccagtgggacactgacgacggggacatgtggaacagcaccgcctcccaggagaac
aactcctggggcaacggacccaaaaagggccctcccaaggggaaggtcccgagcaagcag
gaggacgcctggatcatgagccgcctgaccaagcagctgactgacatgggcttccctaga
gatccagcggaggaggctctgaagagcaacaacatgaacctggaccaggccatgagcgcc
ctgctggagaagaagaccgagctggacaagcgcggggggatgggaggcatgtccgactac
aacaacggcctcatcaacaagcccatggcctgccgcccccccctcccctcttcagaccgc
agccccttcctggacaaggtagttgccagcccctaatacacgcacacacacacacattca
cacacacgcacaagcctaccctcaaacgttaaactcaccacaaaaggcagataaactgag
acacagaaatggctgtcgagactttgacgtgtcttgcgttgcggctgcccccagatgcag
agtggaatgtttggcagtagtggagcagcacaagcccgggccatgcagcagcagcagcag
ctgccgcctgctccccagccatcagtgccacctctcagctcctcccagcctagtctacgc
gctcaagtgcctcagtttatctcccctcaggttcaagcacagctcttacagtttgccgca
aaaaacattggtctgaatcctgcacttttgacctcaccaataaaccctcaacacatgact
cttctgaaccaactctaccagctgcaactggcttaccagcgtttacaaattcagcagcag
atgttgcaggcccagcgcaatgtttccggccccatccgacaacaagagcagcaagttgca
cgtacaatcaataacatgcagcagcagatccaacagcaccaacgccagctggcccaggcc
ctgctgatgaaacagcagcagcagcccccctcccactccggcctgcacgccggccacagc
gccggcaaatcggccctggactccttcccgggacacccccaggctccgggcctacccgac
ctgcagaccaaagagccgcagtcttctcccaactcttacagcccttaccctctctctgga
ctgaatcctaacatgaatgtaaactgcatggaggtggggggtctgtccatgaaagagccc
ccccagccccagtcccgcctatcccagtggacacaccccaactccatggagagtctctcg
ggaagctcctcccccctggagtccaacctggggaagcacggtgccaatctttgcccccca
ggcaagccccccctggatgactcatacagcccctacaatatgatgcccggctcggactcc
cccaccagccccctggtgcccccggacagctggggccagggcaagacctccaacgacaag
atggccaacggcaccaacatcacctggcctccagagttctgtcccggagtgccctggaag
ggcctgcagaacatcgacccggagaacgaccccaacatgaccccgggcagcgtccccagc
gggcccaccatcaacaccaacatccaggacgtcaaccgctacctgctccgggaccgcagt
ggaggctcctcccccacctcatctcagaacgaggctttgcctccagcccctgattggccc
gtcagtgcctactctagctcattctctctgtcgtccccggagacggacgacccaggtaaa
ctgtcagacatgaagtccacctggtccccaggccccatctcccacacccaggcctccctg
tcccacgagctgtggaaggtgccccaggggccccgcaacaccacggccccctccaggccc
ccgccgggcctcaccaacaccaagcccccctcctccacctgggggggcaactccctgggc
ctggcccagggctggagcagctcctacacctcagcaggtaccacatggagtacagacagc
tccaccaggaccagtagctggctggttcttagaaacctcactccacagattgacggctcc
accttgcggacgctgtgcatgcagcatggccccctcatcacattccacctcaacctgacc
cagggcaacgccttggtgcgctacagctccaaggacgaggccgccaaagcccagaagtcc
ctgcacatgtgtgtgctggggaacaccaccatcctggctgaatttgctggggaggaggaa
gtgaatcgcttctttgcacagggccagtctctcggggcgaccaccagctggcaggcaaac
ccaggcaccaatcagacgcggatgggcgggaacgggcacggagcccaacaccccattggc
cactggaacagcggcggcggcggctgcctcggaggaggcggccccaagacgggtggagag
cttctatggggcggcgtgccgcagtactccagcctatgggggcctcccagcggggaggag
gggcgggtcatggggagccccacccccatcaacacgctgctgcctggggatcttctgagc
ggggagtccatgtag

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