Osmerus eperlanus (European smelt): 134012416
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Entry
134012416 CDS
T10927
Name
(RefSeq) retinoic acid-induced protein 1
KO
K19749
retinoic acid-induced protein 1
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oep03000
]
134012416
Transcription factors [BR:
oep03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
134012416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
134012416
NCBI-ProteinID:
XP_062308138
LinkDB
All DBs
Position
2:9809456..9869286
Genome browser
AA seq
2197 aa
AA seq
DB search
MQSFRERSGFHGNQPPCYPQQEPHELSRLESYRQHPPSQHPHPHHPQPHHPLPHPHPGPS
PHPAHASRQGYESHALPATTGMPPAGAGAGTGAAGTGPKDCYSQQAYPGYPGSGGGGGGP
NAGGAGGPTAPQAKKPYRGSKVAPPPPNQHLQAGGYSNHMGPGGVYTAQYMSEGHLQQKW
EDPDTLAQYEQEMVGRLEPGQPGSSQYLDQTMLGHSQSQCHLPPQPSNPVYTSPHHQPHP
PNPAPSPLMYPQSHLHYPQHSPSPSPSSSYMEKCSPMPHCYKGYSMPPNSQYARQMGGHG
GLKQGGYRPQNSYSYQQPPSRGGYDPQPPLQGMPPSQEGHPKYQLYSQPQQNYCLSELSV
RSPEQYYQTCSPSSSHSPARSVGRSPSYSSTPSPLMTNPESFQYGQPPMTPGAASSSSSS
SAGLQEQGMLLPPRSHPSPNLPHPAPHSYSAPTPPSSASSSASMKERFSEKLLSNPSLWS
LNALTSQVENISNNVQQLLLSEALVANKKGGKRSSGGSSGSSSGGSSKKGEEYKSPPCLD
TQHGGGHGGPMPDPYSTPQHQQVPMELQEGGYSSSSDDQLDRGYYYCGQGRSPAQASNNT
HLGLDTASSCSMTSPDDMSTRSGDSGLHGGVSRDNLTPDPRSQGGHGGDGMSTPVKSVGD
ERSPASVTIPSPLKQERDSPPDIQRLGEPLKENFEESAWTEKMADEEENESVKKTPDEER
DCRSMEAANVTQKLEKWPEDEKGPALYNKINQAVTEKSYCYQESAYPGLQNKYEPDEGDS
VEKSPGLSDSSRKGDLTAEMKSEAFKSESPTDSESSVKTSPFISRGDLDQDQYLTEKEDS
SENASPTPQGDASDESVSEKRESQGEEEEEEEEDEEEVDAQQRPPLPPKPPAEVREESES
LLSSTDEGMNNRITPGESTGEFCSRTEGQSVEPHTNTDPAETAAHPDAAATDAAAPSERR
SAMGDIVPQPQSAMPVFSALNDTTTPSAQSREHIDRSDAKVLEPDSPQLPGKSILHSAPS
WADTPPSPKKGDEDMEPGISCPRAVTPSAKPEPLAPSAQPRAYGRKHARGRRRLMHSGVG
VRGQLSLGREGAPSPPQKPCMASSKSALFSDQMDSAHQDAIITSETSTLLAEGFRSRMCT
RSFNAQDVSPKDHTHIKRKPGPKPGPKPGSKPGPKPGSKPGPKVGLKPGPKPGPKPGLKS
GTKPGPKPGPKPGLKPGPKTGSKPGPKTGSKPGPKTGPKQGLKLVEDVLASDVVPPKAPV
GRPRGSASKLKVIQQEGPIQPLTGGSGRGKKSLIANVQQAEENQDVKPTGKDSKNMVLRS
RKPSRDKLSKEKEKEQEEDVLPPTLIELKQASVCLKANEHANVEQNLAVVPNETDISITL
PDRPEHKTLLPLKRKASPEPPLAPLKKKRGPKPKPKPKPKAPQPSEGPLQTNHFPTKPKE
VGARGPKKKQKPSQQLQTSLLSKDSPLPGGDSATTVDIPATPTQCLTKTKYLPPRKGRGQ
KYEAMVQKITSPGSKKHQPTPQPPENVLVEEMTSKIVPQHVCTDNESSVCENRPEVVPRE
VRPDEVRQEGVREEGERQYVWHSKEKKGQIVMEAEVRQDATRQEEVKPEGARQEGVRHQE
EAGRQEELKPEGVRLGESRTEGVRQEEVRDGDSAGVPDRSGAKPTRTKRRKWALVESADA
TVVAMETGSLIINTPRLAKQRAIKNNHEMHLKQKRKRRKGQTSEDEKAQVTTELETDAET
AAPAEASLLVCPGDIAHPSQVVAMEASVAQPKRGRKPSSASSGNAVAPSKKKRGRAASEQ
TGKPGKVHKKPGPKPGMKDAMDVIEAVVRAAGTEQMLKEEQMKKADSTVFEAVDQESPVV
QVSSNPAQNKLMSSFCPYVRIDSSSTFSALCTIVNRPEEEEIHQHTKTSPARIKTPATLD
AKAIQRTSAMLQGPLVNRTLIDRCLTCCLCGKPANYRELGDLCGPYYPEDSIPRKTLSAR
HINPTRENTEKTTSATISADPANEPTTSAPKRETEADSKMGMVEGSKEPVPVVEISSDGH
HHHHHPWRPRRAERGERAPGMGGSRRLTLRERFRRMQQLQDRLHGDGTAPLSGLEGNGNS
LLQRLQGEAEAKEHWAHENCTIWTNGVIMVAGRLFGLKEAASTSAQTSCSNCQGVGASIS
CCLKGCPHKYHYVCAKEIGCTFQEEDFSLTCPKHEAV
NT seq
6594 nt
NT seq
+upstream
nt +downstream
nt
atgcagtccttcagggagcggagcggtttccatggcaaccagcccccctgctaccctcag
caggagccccatgaactgtcccgcctggagagctaccgccaacacccgccgtcccagcac
ccccacccgcaccacccgcagccccaccaccccctcccgcacccccaccctggccccagc
cctcacccagcccatgcctccaggcagggctatgagagtcacgcgctgcccgccactaca
gggatgcccccggccggagcaggggcagggaccggggcagcaggaacagggcctaaggac
tgttatagccagcaggcctaccccggatacccaggcagtggtgggggtggagggggtccc
aacgcaggaggggcgggtgggcccacggctccccaggccaagaagccctacagggggagc
aaggtggctcccccaccccccaaccagcacctccaggctgggggctacagcaatcacatg
ggccctgggggtgtatacacagcccagtatatgagcgagggtcacctccaacagaaatgg
gaggacccagacacactagcccagtacgagcaggagatggtgggccgtctggagccgggg
cagcctggctcgtcccagtacctggaccagaccatgcttggccactctcagagccagtgc
cacctccctccgcagccctccaacccagtgtataccagccctcaccaccagccccacccc
cccaacccagcaccctctcccctgatgtacccccagagccacctccactacccccagcac
tcgccctccccctcgccctcctcttcatacatggagaagtgcagccccatgcctcactgc
tacaaaggctacagcatgcctcccaactcccagtacgccagacagatgggggggcatggc
ggtctcaaacaggggggttacaggccccagaacagctatagctaccagcaacccccttcc
cgtggaggctacgacccccagccgcccttacagggcatgcccccgagccaggagggccac
cccaaataccaactctacagccagccccagcagaactactgtttgtctgaactgtcagtc
cgatctcctgagcagtactaccagacctgcagtccctcctccagccactcccctgcccgc
tctgtgggccgatccccctcctacagctccaccccctccccactgatgaccaatcctgag
tccttccagtatggccagccacccatgactcctggggccgcctcctcctcgtcttcctcc
tcggcgggcctgcaggaacaaggcatgctgctgcccccgcgctcacacccctctcccaac
cttccccacccagccccccacagctacagcgccccaactccaccctcttctgcctcctct
tcagcctccatgaaggagcgcttctccgagaagctgctgtccaaccccagcctgtggagc
ctgaacgccctcacctctcaggtggagaacatctccaacaacgtgcagcagctgctcctc
tccgaggccctggtggccaacaagaagggaggcaagcgcagcagcggagggagcagcgga
agctccagcggaggttcctccaagaagggagaggagtacaagagccctccctgcctggac
acacagcacgggggtgggcacggaggccccatgccagatccctacagcaccccccagcac
cagcaggtgccgatggagctccaggaaggaggctactccagcagctccgatgaccagctc
gaccggggctactactactgtggccagggacggagtccagctcaggcctccaacaacacc
cacctgggcttggacaccgcctcgtcctgttccatgacctccccagatgacatgtctact
aggtccggggactccggtctccatgggggggtctccagagacaacttgacgcctgacccc
aggtcccaggggggtcatggaggggatggaatgagcaccccggtaaagagtgtcggggac
gagagatccccagccagtgtgaccatccccagccccttgaaacaagaacgcgactcccct
ccagacattcagagactgggagagcccctgaaagagaactttgaggagtcggcctggaca
gagaagatggcagatgaggaggaaaatgagagcgtgaaaaagactccagacgaggagcgt
gactgccgaagtatggaagctgccaacgtgacacagaagttagagaagtggccggaggac
gagaagggcccggcgctctataacaagatcaaccaagctgtgacagagaagagctactgc
taccaggagagcgcctacccaggccttcagaacaaatatgagccagatgaaggagactct
gtggaaaagtctccaggcctctcagactcaagccgcaagggagacctgacggctgagatg
aaatctgaggcgttcaaatcagagtcccctaccgattccgagagctcggtaaaaacctcc
ccttttattagcagaggtgaccttgaccaggatcaatatttaacagagaaagaggacagc
tcagagaacgcctctccaaccccccagggtgacgcttcagatgagtccgtctcagaaaag
agagagagccaaggagaagaagaggaagaggaggaggaggatgaggaggaagtggatgca
cagcagcggcctcctctgcctcctaaacccccagcagaggtgagggaggagagtgagagc
ctcctgtcatcgacagatgagggcatgaataatagaatcacgccaggggagtctactgga
gagttctgcagcaggacagagggccagagtgttgagcctcatactaacacagaccctgca
gagaccgccgcccacccagatgcagcagcaacagatgcagcagcaccctccgagaggagg
tcagccatgggggacattgtacctcagcctcagtctgccatgccggttttctcagctctc
aacgacacaaccactcccagtgctcagtccagggaacatatcgaccgtagcgatgcgaag
gttctggaacccgattccccccagctaccaggcaagtccatactgcactcagcgccctcc
tgggcagacaccccgccctccccaaagaagggcgacgaggacatggagccgggcatcagc
tgccctagagccgtcaccccctcagccaagcctgagccgctggccccatctgcacagccc
cgggcctacggacgcaagcacgctcggggcaggaggagactcatgcactcaggtgtgggc
gtcaggggacagctgagcctggggagggagggggctccgtcaccccctcagaaaccctgc
atggcctccagcaagagcgccctcttttcagaccagatggactcagctcaccaggatgcc
atcatcacaagcgagacatccacgctgctggctgagggcttccgctcgaggatgtgcacc
cgttcattcaacgcacaggacgtgtctcccaaggatcatacacacatcaagcggaaacca
gggccaaaaccaggtccaaaaccaggttcaaagccagggccaaaaccaggttcaaagcca
gggccaaaggtaggattaaagcctggacctaaaccaggacctaaacctggtctaaagtct
ggaactaaaccaggacctaaacctggtccaaaacctggactcaaaccaggaccaaaaaca
gggtcaaaaccaggaccaaaaacagggtcaaaaccaggaccaaaaacaggacctaaacaa
ggcctaaagctagttgaggatgtcctagcttctgatgtggtcccccctaaggccccagtg
ggtcgtcccagaggctcagcttcaaagttgaaggtgattcagcaggaaggtcccattcaa
cctctgacaggtgggtcagggagaggcaagaagagtctgattgctaatgtccaacaggca
gaagagaaccaggatgtgaaacccacgggcaaggacagtaagaacatggtcctcagatcc
cgaaaaccttcccgggataaactttccaaggagaaagaaaaggagcaagaagaggacgtt
ctgcccccaaccctgatcgagttaaaacaggccagcgtttgtctaaaagctaatgagcat
gcaaatgtagaacaaaaccttgctgttgttcctaatgaaacagatatcagcataacccta
cctgacagaccagaacataaaaccttacttcctctaaagagaaaggccagcccggagcct
cctctggcaccactgaagaagaaaagaggtccaaaacccaaacccaaacccaaacccaaa
gccccacagccctccgagggccccctgcaaaccaaccattttccaaccaaacccaaggag
gtaggggcccggggccctaagaagaagcaaaagcccagccagcagctccaaacctctctg
ttgtctaaagacagccctcttccagggggagacagtgctaccaccgtagacatacctgcc
acgccaactcagtgtctcaccaaaaccaagtatctgccaccacgcaaaggtcggggacag
aaatatgaggctatggtccaaaaaatcacatcccctgggtcaaagaaacatcaaccgacc
ccccagccgccagagaatgttctggtagaagagatgacgtcaaagattgtgcctcaacat
gtctgcactgacaatgagagttcggtgtgtgagaacaggcctgaggtggtaccgagggaa
gtaagaccggatgaagtcagacaggagggggtgagagaagagggcgagagacagtatgtc
tggcatagtaaagagaaaaagggtcaaatcgtgatggaggcagaggtgagacaggacgcg
acgagacaagaggaggtgaaaccagaaggggcgagacaagaaggtgtgagacaccaagaa
gaagcggggaggcaggaagagctgaaaccagagggagtgagactaggggagagtagaaca
gagggggttcgacaagaggaggtgagagatggggactcagcgggggtgccagacagatcc
ggcgccaagcccaccagaacgaagcgcaggaaatgggccctggtggaaagcgcagacgcc
acggtcgtcgccatggagacggggagcctgattatcaacacgccacgtctggccaagcag
agagccatcaagaacaaccatgagatgcatctgaagcagaagaggaagagaaggaaagga
cagacatcagaggatgagaaagcccaggtgacgacagaactggaaacagatgctgagacg
gctgcacctgccgaggcctcccttttggtctgcccgggtgacatcgcgcacccctcccag
gtcgtcgccatggaagcaagcgtggcacagcccaagagagggagaaaaccctcctccgct
tcttcaggcaatgctgtcgcgccttccaaaaagaaacgggggagagccgcttccgagcag
acgggcaaaccgggaaaggtccacaaaaaacccgggcccaaaccaggaatgaaagacgcc
atggacgtcatcgaggcagtggtgagggcggcaggtaccgaacagatgctcaaagaggaa
cagatgaaaaaagcggactccacagtgtttgaggcggtggaccaggagtcacctgtggta
caagtgtcaagcaatccagcccaaaacaagctcatgtcctccttctgtccttatgtgcga
atagacagttcaagtacgttttctgccctctgtactatagtcaacagaccagaggaggag
gagattcaccagcatacaaaaaccagcccggctcgaattaaaaccccggccacgcttgat
gccaaggcaatacagcgtacctcagctatgctccagggacccttagttaacaggacctta
attgacaggtgtctcacgtgctgcctgtgcggaaagccggcaaattacagggaacttggg
gacttgtgtggaccttactaccctgaggatagcattccccggaaaaccttgtctgccaga
cacataaaccctacgagggaaaacacagaaaagacgaccagtgcaactatcagtgctgac
cctgcgaacgagcccaccacaagcgcccccaagagggagacggaagcagatagcaagatg
ggcatggttgagggcagcaaggagccggtgcccgtcgtagagatcagcagtgatgggcat
catcaccaccaccacccttggcgccccaggcgggcagagaggggggagcgggcaccgggg
atgggtggttctcgccgcctcaccttgagggagaggtttaggagaatgcagcagctgcag
gacaggctgcatggagatggaacagcacctctcagtggcctggagggaaatggcaacagc
ttgctacaaaggctgcaaggagaggctgaggcaaaggaacactgggcccatgagaactgt
accatctggaccaatggggtgatcatggtggcagggagactcttcgggctaaaggaggca
gctagcacctcagcacagacgagctgctccaattgccagggtgtgggcgcgtccatcagc
tgctgcctgaaaggctgccctcacaaataccactatgtctgcgccaaagagataggttgc
acgttccaagaggaggacttttccctgacatgtcccaaacatgaggctgtgtaa
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