Osmerus eperlanus (European smelt): 134013104
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Entry
134013104 CDS
T10927
Symbol
rxrgb
Name
(RefSeq) LOW QUALITY PROTEIN: retinoic acid receptor RXR-gamma-B
KO
K08526
retinoid X receptor gamma
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03320
PPAR signaling pathway
oep04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
134013104 (rxrgb)
03320 PPAR signaling pathway
134013104 (rxrgb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oep03000
]
134013104 (rxrgb)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
oep03310
]
134013104 (rxrgb)
Transcription factors [BR:
oep03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
134013104 (rxrgb)
Nuclear receptors [BR:
oep03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
134013104 (rxrgb)
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Gene cluster
GFIT
Motif
Pfam:
Nuc_recep-AF1
Hormone_recep
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
134013104
NCBI-ProteinID:
XP_062308862
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Position
26:9266326..9280122
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AA seq
470 aa
AA seq
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MWHPMASRXSGGKPGREPGYGHYSSGPMNTAHSHHQPMGXRVGHPSVISTSRPLPPPMST
LGSPMNGLASPYSVITSSLGSPSISLPSTPGMNFGALNSPPVRDCMMNSMNSVSSSEDIK
PPPGLQSMGNINYQCTSPGGMSKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTY
TCRDSKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERGENEVESTSSFNED
MPVDKILDAELAVEPKTESYAEGSPGNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSEL
PLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTE
LVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPTEVEGLREKVYASLESYTKQKYPDQP
GRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQIT
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgtggcatcccatggcatcacgcnacagcggtgggaagccaggcagggagcctggctac
ggccactactcctcagggccaatgaacacagcccactcccaccaccagccaatgggcnna
cgggtgggacatccctctgtcatcagcacgtccaggcctctcccgccccccatgagcacc
ctgggctcccccatgaacggcctggcgtcgccgtactccgtcatcacgtcctcgctgggc
tcgccgtctatctcgctcccctccacacccgggatgaacttcggcgcgctcaacagccct
ccggtgagagactgcatgatgaactccatgaacagtgtcagcagttcagaggacatcaag
ccccccccgggcctgcagtccatggggaacatcaactaccagtgcaccagcccgggaggc
atgtccaaacacatctgcgccatctgtggagaccgctcctcagggaagcactatggcgtg
tacagctgcgaaggctgcaaaggcttcttcaaaagaactatccggaaggacctcacgtac
acgtgtcgagacagcaaggagtgcctgattgacaaacgacagaggaaccgctgccagtac
tgtcgttatcagaagtgcctagccatgggcatgaagagagaagcggtgcaggaggagagg
cagcgggggaaggagcgcggggagaacgaagtggagtccaccagcagcttcaacgaggac
atgcccgtggacaagatcctggacgcggagctggccgtggagcccaagacggagtcgtac
gcggaggggagccccggtaactctaccaacgacccggtgaccaacatctgccaggcagca
gacaagcagctgttcaccctggtggagtgggccaaaaggatcccccacttctcagagctg
cccctggacgaccaggtcatcctactacgagcaggttggaacgagctgctcatcgcctcc
ttctcccaccgctcggtcaccgtgaaagacgggatcttattggccacggggctccacgtc
cacagaagcagcgcccacagcgccggcgtcggctccatctttgacagggttctgacggag
ctggtatccaagatgaaggacatgcagatggacaagactgagctgggctgtctgcgggcc
atcgtcctgtttaaccctgatgccaagggcttgtccaaccccacagaggtagagggactg
agggagaaggtctacgcctcactagaatcatacaccaaacagaagtaccccgaccagccc
ggcaggtttgccaaactgctgctccgcctccctgcgctacgctccatagggctcaaatgt
ctggagcacctgttcttcttcaagctgatcggagacacgcccatagataccttcctcatg
gagatgcttgaagcgccacaccagatcacatga
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