Osmerus eperlanus (European smelt): 134013634
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Entry
134013634 CDS
T10927
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134013634 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oep03041
]
134013634 (ddx46)
Enzymes [BR:
oep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134013634 (ddx46)
Spliceosome [BR:
oep03041
]
Complex A
U2 snRNP components
U2 related factors
134013634 (ddx46)
Complex B
134013634 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
134013634
NCBI-ProteinID:
XP_062309191
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All DBs
Position
27:complement(2779540..2788943)
Genome browser
AA seq
1074 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSKSRSPDKRSKKDNRVANRDRDRTRRERSRSRERRRSRS
RDRKHPRRSRSRERRRSRSRDRRRSKSRSRGRRSRSASPSKSRKTEEKSKSKEKDNPEGS
SEKKKIKEEKEEEKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKRELEE
MKQGKKWSLEDDDDDDEEGPAPADGDEDEEEEEGGEGKEPKMKEEKEEEEEEEKEEEEKE
KEKETPMEQEAEDELDPLDAYMEEVKEEVKKFNMGAMKGDKKGGMTVTKVMTVLKTKKGI
HTHKKKGELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKVLEPVDHQKIEYEPYRKNF
YVEVPELGKMSPEEVNVYRLELEGIMVKGKGCPKPIKSWVQCGTSMKILSALKRHSYEKP
TPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMYRHILDQRPLEEGEGPLSVIMTPTR
ELALQITKECKKFSKPLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSG
RVTNLRRVTYVVVDEADRMFDMGFEPQVMRIMDNVRPDRQTVMFSATFPRAMEALARRIL
SKPIEVQVGGRSVVCSDVEQHVLVIEEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADGL
LKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGTCRLMVATSVAARGLDIKHLILVINYN
CPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQVRYAGDILKALELSGSPVPPELEKLWAS
FKDQQKAEGKSIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIDE
QIESMFNSKKRVKDLSAPGGAGGGMGAMAAAVAAAGGLANLGAPSAGNIQKLEMAKRLAL
RINAQKNLGAEAQDVMQQATNAILRGGTILAPSVSAKTIAEQLAEKINAKLNYIPVEKLE
EERQAAEQAETVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGK
EPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atggggagagagtcgagacattacaggaaacgctctgcgtcaagaggtcgatcgggaagt
cggtctaaaagtcgttccccagataaacgatcaaagaaagataaccgggtagcgaatcgc
gacagggaccggaccaggcgggagcggtcacggagtcgggaacgacgtcgatcacggtct
agagataggaagcacccaaggcgctccaggagccgtgagaggaggagatcccgcagtcgc
gacaggcggaggtccaaaagtagaagcaggggacgacggtcacgatcagccagcccgagc
aaaagcaggaagacagaggaaaagtccaaaagcaaagagaaggacaatcctgaaggctcc
tcagagaagaaaaagataaaagaggagaaagaggaggagaaagttgaagaccaagacttc
gaccagaacaagctggaggaggagatgaggaagaggaaggagcgagtggagaaatggaga
gaggagcagcggaagaaggccatagaaaacatcggggagatcaagagagagctggaggag
atgaaacaggggaagaagtggagcctggaggacgacgatgatgacgatgaggaggggcca
gcacccgccgatggggatgaagacgaggaggaagaggagggaggcgagggaaaggagccc
aaaatgaaagaggagaaggaggaggaggaggaggaggagaaggaggaggaagagaaggag
aaagagaaggagacccctatggaacaagaagccgaagacgagctggatcctttggatgcc
tacatggaggaggtgaaggaggaggtcaagaagttcaacatgggcgccatgaagggggat
aagaagggggggatgaccgtaaccaaggttatgaccgtcctcaagaccaaaaaaggaatt
cacacacacaagaagaagggcgagctgatggagaatgaccaggatgcaatggagtactcc
tcggaggaggaggaagtggatctccagaccgcgctgaccggctaccagaccaagcagcgg
aaggttctggaaccagtcgaccaccaaaagatcgagtacgagccctaccgcaagaacttc
tacgtggaggtgccagagctgggaaagatgtccccggaagaggtgaacgtgtacagactg
gagctggagggcatcatggtgaagggaaagggctgccccaagcccatcaagtcctgggtt
cagtgtggaacctccatgaagatcctcagtgctctgaaaaggcacagctatgagaagccc
acccccatccaggcccaggccatccctgccatcatgtctgggcgggacctgatcggcatc
gccaagacggggagcggcaagaccatcgccttcctcctgcccatgtaccgacacatcctg
gaccagaggcccctggaggagggcgaggggccactctctgtgatcatgacccccacccgc
gagctggcgctgcagatcaccaaggagtgtaagaagttctccaagcctctgggactacgt
gtggtgtgtgtgtacggaggcacggggatcagcgaacagatagcagagctgaagagggga
gcagagatcatcgtgtgcaccccagggaggatgattgacatgctcggagccaacagcggt
cgtgtcaccaaccttcgcagggtcacgtacgtggttgtggacgaggctgacaggatgttc
gacatgggtttcgaaccacaggtgatgcgcatcatggacaacgtgcggccggaccggcag
accgtcatgttctccgccacgttccccagggccatggaggcgctggcccgccgcatcctg
tccaagcccatcgaggtgcaggtgggcgggcgcagcgtggtctgctccgacgtggagcag
catgtgctggtgatcgaagaggacaagaagttcctgaagctccttgagatcctgggtcac
taccaggagaagggcagcgtgatcatcttcgtggacaagcaggagcacgctgacgggctg
ctgaaagatctcatgaaggcctcctacccctgtatgtctctgcacggaggcatcgaccag
tacgacagagacagcatcatcaacgacttcaagaacggcacctgccgtctgatggtggcc
acgtcggtggcggcccggggcctggacatcaagcacctgatcctggtgatcaactacaac
tgccccaaccactatgaagactacgtccacagggcggggcgcacgggccgggcagggaac
aaggggtttgcctacaccttcatcacagaggaccaggtgcgctacgcaggagacatactg
aaggcactggagctgtctgggtctccggtccccccagagctggagaagttgtgggcctcc
ttcaaagaccagcagaaagccgaagggaaaagcatcaagagcagcagtgggttctctggg
aagggcttcaagttcgacgagacggaacacgcgctggccaatgagaggaagaagctgcag
aaggctgcgctgggtctgcaggactctgacgacgaggacggggccttggacatcgacgag
cagatcgagagcatgttcaactccaagaagagggtgaaggacctgtccgcccctgggggg
gccggggggggcatgggggccatggcggcagcggtggcggccgcaggggggctggctaac
ctcggggccccgtccgccggaaacatccagaagctggagatggccaagaggctagccctg
cgcatcaacgcccagaagaacctcggagccgaggcccaggatgtgatgcagcaggccacc
aacgccatcctgaggggcggcaccatcctggcgccctcggtgtcggccaagacgatcgcg
gagcagctggcagagaagatcaacgccaagctcaactacatccccgtggagaagctggag
gaggaacgccaggccgccgagcaggcggagaccgtcaagagatacgaggaggagctggag
attaacgacttcccccagactgccaggtggaaggtgacgtccaaggaagccctgcagagg
attggagaatactctgaggcagccatcaccatccggggcacctacttccccccgggcaag
gagcccaaggagggggagcgcaagatctacctggccatcgagagtgctaatgagcttgcc
gttcagaaggccaaggctgagatcacacgcctgatcaaggaagagctcatcagacttcaa
aactcctaccagccgaccagcaagggaagatacaaggtgttgtag
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