Osmerus eperlanus (European smelt): 134013658
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Entry
134013658 CDS
T10927
Symbol
taf1
Name
(RefSeq) transcription initiation factor TFIID subunit 1 isoform X1
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
134013658 (taf1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
oep01001
]
134013658 (taf1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oep03021
]
134013658 (taf1)
03036 Chromosome and associated proteins [BR:
oep03036
]
134013658 (taf1)
Enzymes [BR:
oep01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
134013658 (taf1)
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
134013658 (taf1)
Protein kinases [BR:
oep01001
]
Serine/threonine kinases: Other
TAF1 family
134013658 (taf1)
Transcription machinery [BR:
oep03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
134013658 (taf1)
Chromosome and associated proteins [BR:
oep03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
134013658 (taf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
TBP-binding
zf-CCHC_6
Cac1_C
Motif
Other DBs
NCBI-GeneID:
134013658
NCBI-ProteinID:
XP_062309241
LinkDB
All DBs
Position
27:complement(3893442..3910851)
Genome browser
AA seq
2053 aa
AA seq
DB search
MSDSDSDEDQDRPFSLTGFLFGNINEDGQLEGDSVLDTECKKHLAGLGSLGLGTLITEIT
ASEDDDPDEDRDTGGTDAEGWVKSTEDAVDYSDISEVAEDETKKYRHAMGTLQPTRRTDD
EDDYDADCEDIDAKLMPPPPPPIVPTHGKKEESAPQTTSVGDEGDGIILPSIIAPSSLGD
KVDFSSSSDSESETDRPGPGSGAGGPPGCLTLPLAGIMQKDAAKALPGVTELFPVFRPGR
VLRFLRLFGPGKNMPSVWRSARRKRRRKHRDPQPGTPPPEGEPMDQGSELKSGWEYEYAS
APPPEQCLSDDEITMMAPVESKFSQASGDGDKVAESRPKVAEWRYGPAQLWYDMLGVPED
GSGFQYGFRLKEENDDEKEEEEPEPAPEPPAEQMTGEESQEKETLENELFLMVTQLQWED
DIIWNGEDVKHKGTKTQRASLAGWLPSSMTRNANAYNAQQGLSRSNSQLVPPTPPPMPKP
PSLSGSKRDKHNHDHQGTARPGRPSAGEGASVPFSYHSTAPPSSGKPKWRDAGVSGPLDR
AIRPPLCSSTASHEDDAPWFSIFPIDNEELVYGRWEDNIIWDDQAMDRLLSPPVLTLDPN
DENIILEIPDEKEERTSHSPSKENKKESALKKSRILLGKTGVIKDEPQQNMSQPEVKDQW
NLSNDEFYYPKQQGLRGTFGGNIIQHSIPAVELRQPFFPTHMGPMKLRQFHRPSLKKYSF
GTLSQPGPHASQPLLKQIKKKAKMREQERQASGGGDMFFMRTAQDLTGKDGDLILAEYSE
EYPPLIMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTSPFLGSLHPGQLLPAFEN
NLFRAPIYLHKMPETDFLVLRTRQGYFVRELVDIFVVGQECPLYEVPGPNSKRANTHIRD
FLQVFIYRLFWKSKDRPRRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTDRRAERKRSA
SYDWYGFHYEGMDSNWWVLKPDFRLPTEEEIRAMVSPEQCCAYYSMLVAEQRLKDAGYGE
KSFFAPEEENEEDFQMKIDDEVRTAPWNTTRAFIAAMKGKCLLEVTGVADPTGCGEGFSY
VKVPNKPTQQKDDREPQPAKKTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKKLSRWEV
IDVVRTMSTEQARSGEGPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLESTEVLST
DTDSSSAEDSDFEEMGKNIENMLQNKKTSSQLSREREEQERKELQRMLMGEESDRDHKGR
KERRKGFSSALSTSSHKDDDTSSVTSLNSSATGRRLKIYRTFRDEDGKEYVRCETVRKPS
VIDAYTRIRTTKDDDFIRKFALFDEQHREEMRKERRRIQEQLRRLKRNQEKDKFKGPPEK
KAKKVKERPDLKVKLKCGACGAIGHMRTNKFCPLYYQTNAPPSNPVAMTEEQEEELEKTV
IHNDNEELIKVEGTKIVLGKQLIESADEVRRKSLVLKFPKQQLPPKKKRRVGSAVHCDYL
NRPHKSIHRRRTDPMVTLSSVLESVINDMRDHPNTYPFHTPVNAKVVKDYYKIITRPMDL
QTLRENVRKRMYPSRDEFRENVELIVKNSGTYNGAKHPITQVAQSMLDLCDTKLKEKEDR
LVRLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVSP
MDLENLRKNISKHKYQNRDVFLFDVTLVHTNSVKYNGPDSPYTKTALDIVNVCKQTLAEY
DEHLTQLEKDISTAKEAALDAADLDGLDPLTPGPYTPQPSDLFDSVGSVGLQRDAGLFSE
GPLLAAPEKRGGQGRHGRRLGEEESDVDIEGFEEDDDGKPKTPAPAEDGEGDLDDDEDDD
EMLLPPRRRLLGHEDEEEDEEEEVEGGFGRGQPQASVLYQDLLMSDGEDDASEEEGDNPF
SSIHLSESGSDSDREVELRPPAPPRPHPETARMGLEQEESMMSYEGEEGPDQTHMEDSNV
SYGSYEETDGQAPTQALSMGNGEGYGISEEEEEEEDAQRKGPSVLTQAQLSEDDEDSEEF
RSIGGDSDNESDN
NT seq
6162 nt
NT seq
+upstream
nt +downstream
nt
atgtcggattcagacagcgatgaagaccaagaccgtcccttctctctcactggcttcctc
ttcgggaatatcaacgaagatgggcagttggagggtgacagcgtgctggacactgagtgt
aagaagcacctggccggcctgggctccctcggcctggggacgctcatcacagagatcacg
gccagcgaagacgacgaccccgacgaggacagggacaccgggggcacagatgccgagggc
tgggtgaagagcaccgaagacgcggtggattactccgacatcagcgaggtggccgaggac
gagaccaagaagtaccgtcacgctatggggaccctccagcccaccaggaggacagatgat
gaggatgactacgatgccgactgtgaagacattgacgccaagctgatgccccctcctcct
ccgcccatcgtccccacccatggcaagaaagaggaatccgccccacagacgaccagtgtt
ggggacgaaggagatggaatcatcctgccctccatcatcgccccctcctccctgggagac
aaggtggacttcagcagctcctcagactccgagtccgagacggaccggcccggcccgggc
tccggggccgggggccccccgggctgcctcaccctgcccctggctggcatcatgcagaag
gacgccgccaaagctctccctggggtcacggagctcttcccggtgttcaggcccggaagg
gttctgcgcttcctccgtctgtttggccccgggaagaacatgccgtcggtgtggaggagc
gcccggaggaagcggaggaggaagcatcgagacccccagccgggaacgccgcccccagag
ggggagcccatggaccagggctcagagctgaagtctggctgggagtacgaatacgcctcc
gctccacccccagagcagtgtctctcggatgacgagatcaccatgatggcccctgtcgag
tccaagttctcccaggcctcgggggacggcgacaaggtggccgagtcgcgtcccaaggtg
gcagagtggcgctacggcccggcccagctctggtacgacatgctgggggtgcccgaggac
ggcagcggcttccagtacggcttcaggctgaaggaggagaacgacgacgagaaggaggag
gaggagcctgaaccggcgccagaacctcccgcggagcagatgacgggcgaggagagccag
gagaaagagactctggagaacgagctcttcctcatggtcacccagcttcagtgggaggac
gacatcatctggaacggcgaggacgtgaaacacaaaggcactaagacccagcgagccagc
ctggccgggtggctgccctcgagcatgacgcgcaacgccaacgcctacaacgcacagcag
ggtcttagcagaagtaactcccagctggtgcctcccacccctccacccatgcccaaaccc
ccctcgctctccgggtccaagcgggacaaacacaaccatgaccaccaaggtaccgcgagg
ccgggccgcccgtcggctggcgaaggagcctcagtgcccttttcgtaccacagcactgca
cccccgtcctccgggaaaccgaaatggagggacgcgggtgtttcgggccctcttgaccgg
gcgatacgccctcccctgtgctcctccacagcctcccatgaggatgacgccccctggttc
tccatcttccccatcgacaacgaggagctggtgtacgggcgctgggaggacaacatcatc
tgggacgaccaggccatggaccgcttgctgtcccccccggtcctcaccctggaccccaac
gacgagaacatcatcttagagatcccagatgagaaggaggagaggacgtcccactctccg
tccaaggagaacaagaaggagtcggccctgaagaagagtcgcatcctgctggggaagacc
ggggtgatcaaagacgagccccagcagaacatgtcccagccggaggtgaaggaccagtgg
aacctgtccaacgacgagttctactaccccaagcagcagggcctgaggggaacgtttggg
ggcaacatcattcagcactccatcccggccgtggagctccggcagccgttcttccccacc
cacatgggccccatgaagctccggcagttccaccggccctccctgaagaagtactccttc
ggcaccctgtcccaaccgggcccccacgcctcccagcctctgctcaaacagatcaagaag
aaggccaagatgcgagagcaggagcggcaggcgtcgggcggaggggacatgttcttcatg
cgcaccgcccaggacctgacggggaaagacggggacctgatcctagcggagtacagcgag
gaataccccccgctcatcatgcaagtcggcatggcaaccaagatcaagaactactacaaa
agaaaaccagggaaggatcctggagctcctgactgcaagtacggagagacggtttactgc
cacacctcgcccttcctaggatccctccaccctgggcagctcctaccggctttcgagaac
aacctgttccgcgcgcccatctacctccacaagatgcccgagacggacttcctggtgctg
cgtacgcggcagggctacttcgtccgtgagctggtggacatcttcgtggtcggccaggag
tgtcctctctacgaggtccccgggcccaactccaaacgggccaacacccacatccgagac
ttcctacaggtgttcatctatcggttgttctggaagagcaaagaccggccgcggaggatt
cgaatggaggatataaagaaggccttcccctcccattccgagagcagcatccgcaaacgc
ctcaaactctgcgccgactttaagcggacagacagacgtgcagaaagaaagaggtcagcc
tcttatgactggtacggctttcactacgaagggatggactccaactggtgggtgctgaag
cccgacttcaggctgcccacggaggaggagatcagggccatggtgtcccctgagcagtgc
tgcgcctactacagcatgctggtggccgagcagagactcaaggatgctggctacggggaa
aagtctttctttgcccccgaggaggaaaacgaagaagacttccagatgaagattgacgac
gaggtccgcacggcgccctggaacacgacgcgagccttcatcgccgccatgaaggggaag
tgtctgctggaggtgacgggcgtggccgaccccaccggctgtggggagggcttctcctac
gtcaaagtcccaaacaagcccactcagcagaaggacgaccgagagccgcaacccgccaag
aagacggtcacgggcaccgacgccgacctgaggcggttgtcgctcaagaacgccaagcag
ctgctgcgcaagttcggcgtccccgaggaggagatcaagaagctctcgcggtgggaggtg
atcgacgtggtgaggaccatgtccacggagcaggcgcgctccggcgaggggcccatgagc
aagttcgcccggggctcccgcttctccgtggccgaacaccaggagcgctacaaagaggag
tgccagcgcatcttcgacctgcagaacaaggtgttggagtccaccgaggtcctgtccacc
gacacggacagcagctcggcggaggacagcgactttgaggagatggggaagaacatcgag
aacatgctgcagaacaagaagaccagctcgcagctgtcccgcgagagggaggagcaggag
cgcaaggagctgcagaggatgctgatgggcgaggagagcgaccgcgaccacaaggggcgc
aaggagcgccgcaagggcttctccagcgccttgtccaccagctcccacaaagacgacgac
acgtcgtcggtcaccagcctgaactcgtcggccacggggcgccgcctcaagatctaccgc
acgttccgggacgaggacggcaaggagtacgtccgctgcgagacggtgcgcaagccctcc
gtcatcgacgcctacacccgcatccgcaccaccaaggacgacgacttcataaggaagttt
gcgctgttcgacgagcagcaccgggaggagatgaggaaggagcgccggcgcatccaggag
cagctccgccggctgaagaggaaccaggagaaggacaagttcaagggccctccggagaag
aaagccaagaaggtcaaagagaggcctgacctcaaggtaaaactgaagtgcggagcctgc
ggcgccatcggacacatgcgcaccaacaagttctgcccgctgtactaccagaccaacgcg
ccgccctccaaccccgttgccatgacggaggagcaggaggaggagctggagaagacggtg
atccacaacgacaacgaggagctcatcaaggtggagggcaccaagatcgtcctgggcaag
cagctcatcgagagtgccgacgaggtacgcaggaagtctctggtgctgaagttccccaaa
cagcaactgcctcccaagaagaagaggcgtgttggatcggccgtgcactgtgactacctg
aacaggccgcacaagtccatccaccggagacgcaccgaccccatggtgaccctgtcctcg
gtcctggagagcgtcatcaacgacatgagggatcacccaaatacctatcccttccacacc
ccagtcaacgccaaggtggtcaaggactactacaagatcatcacgcgccccatggacctg
cagaccctgagggagaacgtgcgcaagcgcatgtacccgtcccgggacgagttccgcgag
aacgtggagctcatcgtcaagaacagcgggacctacaacggggcgaagcatccaatcacc
caggtggcccagtccatgctggacctctgtgatacgaagctgaaagagaaggaggacagg
ctggtgaggctggagaaggccatcaacccactgctggacgatgacgaccaggtggcgttc
tccttcatcctggacaacatcgtcactcagaagatgatggccgtgcctgactcatggccg
ttccaccatcctgtcaacaagaagtttgtcccagattattacaaagtgatcgtcagcccc
atggatctggagaacctccgcaagaacatctccaaacacaagtaccagaaccgggacgtg
ttcctgttcgacgtcactctcgtccacaccaacagtgtcaagtacaacggtccagacagc
ccctacaccaaaaccgccctggacatcgtcaacgtgtgcaagcagaccctggcggagtac
gacgaacacctcacccagctggagaaggacatctccacggctaaagaggccgccctggac
gcggccgacctggacgggctggaccccctcaccccgggaccctacacaccccagccgtca
gatctgtttgacagcgtgggctcagtgggcctgcagagagacgcgggcctgttctctgag
ggacctctcctggccgctccagagaagagaggagggcagggtcgccacggcaggaggcta
ggggaggaggagtctgacgtcgacatcgaaggctttgaggaggacgatgacggcaagccc
aagacccctgctcctgcggaggacggcgagggcgacctggacgacgacgaggacgacgac
gagatgctgctgccgccccgccggcgcctgctcggccacgaggacgaggaggaggacgag
gaggaggaggtggagggaggctttggccggggccagccccaggccagcgtgctctaccag
gacctgctcatgtccgacggggaggacgatgccagcgaggaggagggggacaacccattc
tcctcaatccacctgtcggagagcggcagcgactcggaccgtgaggtggagctgcgtccc
ccggcgccgcccaggccccacccggagacggcccgcatgggcctggagcaggaggagagc
atgatgtcctacgagggggaggaggggcccgaccagacgcacatggaggacagcaacgtc
agctatgggagctatgaggagactgacggccaggctccaacgcaggccctgagcatgggc
aacggcgagggctatggcatcagcgaggaggaggaggaggaggaagatgctcagaggaag
ggccccagcgtgctgacccaggcccagctgagcgaggacgacgaggacagcgaagagttc
cgatccatcgggggggacagcgacaacgagtctgacaactag
DBGET
integrated database retrieval system
