KEGG   Osmerus eperlanus (European smelt): 134013725
Entry
134013725         CDS       T10927                                 
Symbol
xndc1
Name
(RefSeq) short transient receptor potential channel 2
  KO
K10803  DNA-repair protein XRCC1
Organism
oep  Osmerus eperlanus (European smelt)
Pathway
oep03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:oep00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    134013725 (xndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oep03400]
    134013725 (xndc1)
DNA repair and recombination proteins [BR:oep03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     134013725 (xndc1)
SSDB
Motif
Pfam: XRCC1_N zf-C2HC_2 Zn-C2H2_12 zf-Di19
Other DBs
NCBI-GeneID: 134013725
NCBI-ProteinID: XP_062309394
LinkDB
Position
27:3796257..3799549
AA seq 412 aa
MAPVKIKHVVSFTSQDPKSTVGNLFGEDAGTRSWLCNPQDHSGVLKAELQLEHITCIRYI
DVGNCGSAFIQIDVGRSSWSLDHPYTTLLPTTTLMSPAESRQGSVRTGVRMFKKGDFLSE
GAEDSWDRVRVTCSQPFNRRSQFGLSFLRIRSAQGENDCVPTQQKALEGLSPGVGQWLSS
PAVQKTFFREKSRKDFPMASVGLSRTARMVLSAASRHPAPKSLSNAPSSPPNTRTSPSAK
ADTSTPSTAEEDVLTSNIHPHTASKACLFSALSPKDNNNLRQPKSKKNSNTRCDQLNETP
CSKQRRPASRRSPSPVSTAMLPAHSPAVDIETTCPICGEMFTAEYLPLHASSCQETDAVH
PGIASSLPLSPDPPSSPEDMFPCPLCSFRFPASRIQLHASTCEELSPFIWLD
NT seq 1239 nt   +upstreamnt  +downstreamnt
atggctccggtaaaaataaaacacgtcgtttctttcacttcacaggaccccaaaagtaca
gttggcaacctgtttggtgaggatgcaggcacccgatcttggctttgtaacccgcaagac
cacagtggggtccttaaagcagagttgcaattggagcatatcacttgtattagatatatc
gatgtggggaactgtggatccgcgttcatccagattgatgtagggcgctcgtcttggtcg
ctggaccacccatacaccacccttttaccaaccacaaccttaatgagccctgcggaatca
cggcagggcagcgtcaggacgggagtgcgaatgttcaagaaaggtgacttcttgtcagag
ggtgccgaggacagctgggaccgagtgcgagtcacctgttctcagcccttcaaccgacgt
tcccagttcggcctgtcctttctccgtatccgaagtgcccagggggaaaacgactgtgtt
cccacacagcagaaagcactggaaggactctcaccaggtgtgggacagtggctctccagc
ccggcagtccagaaaaccttctttcgggaaaagagtcgcaaggactttccgatggcttct
gtcggtttgagtcggacggcacgcatggtactttcagctgcctcccgccaccctgcaccg
aagtctctatccaacgcaccctctagtcctccaaacacacgtacctccccctcggccaag
gctgacacatctacaccttccactgcagaagaagatgtactgaccagtaatatacacccg
cacacagcttcgaaggcgtgtttattctcagctctcagcccaaaggacaataataatctc
cgacaaccaaagagtaagaaaaactccaacacaagatgtgatcagctaaatgagactccc
tgtagtaaacagagaagacctgcgagcaggaggtctccctcaccagtctctacagccatg
ctccctgctcactctcctgctgtagatatagagaccacttgccctatatgtggagagatg
ttcacggcggaatacctacctctccacgcctcttcctgtcaggagacagacgcagtgcac
cctgggattgcgagttctctccccctgtcccctgaccctccctctagcccggaggacatg
tttccttgccctctctgctccttccgattccctgcctctcgcatccagctgcatgccagc
acctgtgaagaattgagccccttcatttggctggactga

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