Osmerus eperlanus (European smelt): 134013761
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Entry
134013761 CDS
T10927
Symbol
exosc8
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134013761 (exosc8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oep03019
]
134013761 (exosc8)
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
134013761 (exosc8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
134013761
NCBI-ProteinID:
XP_062309451
LinkDB
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Position
27:complement(3080363..3083126)
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AA seq
277 aa
AA seq
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MAAGFKTADPLEYHRSFLKENCRPDGRELGEFRTTTLNIGSISTADGSALVKIGNTTVMC
GIKAELTNPPVDAPTKGYIVPNVDLPPLCSSRFRPGPPAEEAQAASQFIADVIKSSDVIK
AEDLCIEKGKLCWVLYCDLMCLDYDGNLLDVCLIALLAALRNTRLPEVTVGKETSTPKVN
LEKRRGLRVNRCPLGATFAVFDNSVVIVDPTVEEESLSTATLTVVTDQDERLYAVHKPGG
TSMSGEKLQDCINRTSTRHRELSKLIDRVLQGSKTPE
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atggcggctggtttcaagaccgcagaccctctggagtatcacaggagttttctgaaagag
aactgccggccagatggaagggaattgggggagttcagaaccacgacattaaatataggc
tctatatcaaccgccgatggctctgccttggtgaagattggaaacacgaccgtcatgtgt
ggcattaaagcagaactgacaaacccacctgtggacgcacccactaaaggctacatcgtg
cccaacgtggaccttcctccactgtgttcgtcacggttccgcccaggacctccagcagaa
gaggcccaggccgccagccagttcatcgctgatgtcatcaagagctctgacgtgataaag
gcggaagatttgtgcattgaaaagggaaagctgtgctgggtgttgtactgcgacctcatg
tgtctggactacgatgggaacctcctggacgtgtgtctcatcgccctgctggcggctctg
aggaacacacgacttccagaggtcactgttggcaaggaaacgagcacccctaaggtcaac
ctggagaagaggaggggcctgagggtgaacaggtgccctctaggggccacctttgccgtg
tttgacaactctgtagtgatagtggaccccacagtggaggaggagagcttgtccacggcc
acactcaccgtggtaacagaccaggacgagcgcctgtacgctgtccacaaaccagggggg
acctccatgtcgggggagaagctgcaggactgcatcaaccgaacctccacccggcaccgc
gagctcagcaagctcatagaccgggtcctccagggcagcaagacgccggaatga
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