Osmerus eperlanus (European smelt): 134013869
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Entry
134013869 CDS
T10927
Name
(RefSeq) transcription factor SOX-30-like isoform X1
KO
K09271
transcription factor SOX15/30
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oep03000
]
134013869
Transcription factors [BR:
oep03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
134013869
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
134013869
NCBI-ProteinID:
XP_062309602
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Position
27:complement(7862924..7865838)
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AA seq
608 aa
AA seq
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MDRHPKRRAQMTFKKGEQKKNELDVQLPAKTEVREKDEAGPSSSTEKHGGGEEQPLKTEE
GCVRSECSEDVSSRPNTLPTYNRCDGALVPTISTQRQRRTTQVQPVEETSAFVIQKVDGP
FISEVVASTPTRDVSNGTQDQLYTPLIHTVDLPQPVAVTKTETFSFRQDEQQITLSRVPF
PVNVPLVSEPSVRVNTEGMDLTIPPEGSAMVNVPESASRNGYIKRPMNAFMVWARIHRPA
LSRVNPTANNADISVQLGYEWSRLTEVQKMPYYEESRRLKDVHRQKYPGWIYQPRAGRKR
GYVVTAETPGPSSSSSSSTVSSGSDPQAYTHISMGQTRTPGPATLNSFSPYMLDSASAGS
GDHLVQVSESAVTQPHSSTPQYYQSSSPQPATVTPSPQSRRPRASLAPNPNSSSPEATRR
PYTRRASRRPYYRMASEVPSCNMAACSRPPQLPGLTHPHLYPSTSVPHFFSGPRYPFNPS
FFFPGSPFYPTGFPMGSYSYPERPNPMADVIGFYEQRFQRHEALLSALNRDYLYQDPAAS
AEAEGSGHAHPPPPPPSCSEYLSTAQGLDVGALETVFTTPSPENLTRVQRVYTAVENQEE
EVRVLRIL
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggataggcacccaaaacgaagggcacagatgacgtttaagaaaggtgaacaaaaaaaa
aatgagcttgatgtgcaacttcccgctaagacagaggttagggaaaaggatgaagcaggc
ccatcatcttcaacggagaagcacggaggcggcgaagagcaaccgttgaaaacggaggaa
ggctgtgtccgttcagaatgcagcgaagatgttagcagtaggcctaacactttaccgact
tataatagatgtgatggtgctctggtcccaactatttcaacacagagacaaagacgaaca
actcaagttcaacctgttgaggaaaccagtgcgtttgtcattcaaaaagttgatgggcct
ttcatatccgaagtggtagcttccacacccacacgtgatgtttccaacggaacacaggat
caattgtatactcctcttatccacactgtggatttacctcaaccagttgccgtaacaaaa
acagagacattttcatttcgccaagatgaacaacagataaccctcagcagagtgccattc
cctgttaacgtcccgttagtgtctgaaccttcggtgagggttaacactgaagggatggat
ctcaccatacccccggaaggatcagccatggtgaacgtgcctgagagtgcgtcgcggaac
ggttacatcaagaggcctatgaacgccttcatggtgtgggccaggatccaccggcctgcc
ctgtccagggtcaaccccaccgccaacaatgccgacatcagtgtccagctggggtatgag
tggagccgtctgactgaggtgcagaagatgccttactatgaagaatcccgcaggctcaaa
gacgtccacaggcaaaagtatccaggttggatctaccagcctagagcagggaggaaaaga
gggtatgttgtgaccgctgagacacctgggccctcctcctcctcttcctcctccaccgtt
tccagtggttctgatccacaggcctacacacacataagcatgggccagaccagaacccca
ggcccagccaccctgaattcatttagtccatacatgctagactcagcctcagcaggttca
ggtgaccacctagtccaagtgtctgagtctgcagtcactcagccccacagctccacaccc
caatattaccagtcatccagcccccagcccgccaccgtgaccccttccccccaaagcagg
cgtcctagggccagcctggcccccaaccccaactcctccagccctgaagccacccgcagg
ccctataccagaagggctagcaggcgcccttactacaggatggcttcagaggtgccgtca
tgcaacatggccgcctgctccaggcccccacagctgcctggtctgacacacccacacctg
tacccatccacttccgtgcctcacttcttctctggtcctcgctatcccttcaacccctcc
ttcttcttcccgggaagtccgttctatcccacagggttccccatggggtcctactcatat
ccagagcggcccaaccccatggccgacgtcattggcttctacgagcagcgcttccagagg
cacgaggccctcctctctgctttgaacagggactacctgtaccaggacccagcggccagc
gcagaggctgagggcagtggccacgcccacccccctcctccacccccatcctgcagcgag
tacctgagcacggcacaggggctggacgtgggcgccctggagaccgtgttcactacgccg
tccccggagaacctcactcgtgttcagagggtctacacagccgtggagaaccaagaggag
gaagtgcgcgttctgagaatcctttag
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