Osmerus eperlanus (European smelt): 134014897
Help
Entry
134014897 CDS
T10927
Symbol
cacna1ba
Name
(RefSeq) LOW QUALITY PROTEIN: calcium channel, voltage-dependent, N type, alpha 1B subunit, a
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04010
MAPK signaling pathway
oep04020
Calcium signaling pathway
Brite
Ion channels [BR:
oep04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
134014897 (cacna1ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
134014897
NCBI-ProteinID:
XP_062310060
LinkDB
All DBs
Position
28:4470856..4523949
Genome browser
AA seq
2024 aa
AA seq
DB search
MARFEDDLSGRRGAIWPPGPPSGPRVYKQTMAQRARTMAIYNPIPVKQNCLTVNRSLFIF
SEDNIIRKYAKKITEWPPFEYMILATIIANCIVLALEQHLPASDKTPMSERLDDTEPYFI
GIFCFEAGIKIIALGFAFHKGTYLRNGWNVMDFVVVLTGILATAGADFDLRTLRXVRVLR
PLKLVSGIPSLQVVLKSIMKAMVPLLQIGMLLFFAILMFAIIGLDFYMGKFHRTCFRNDT
GEQMADFPCGLENPARTCPSGTLCQEYWLGPNYGITNFDYILFAILTVFQCIPWRAGWTS
STTFNFEEETPTTNFDTFPAAILTVFQILTGEDWNAVMYHGIESQGGVRRGMFSSIYFIV
LTLFGNYTLLNVFLAIAVDNLANAQELTKDEEEQEEAINKKLAMQKAKEVKVSPMSTANI
SITAFVRHRRGANSSSSSICSVNSLKEQQKSLKMRSVWEQRTTQLRKHNVRASSEALYSE
MDPEEKIRMTSAMHIRPDMMTHLDRPLVVEPHDGPGQPKPRTPEEAEATTDPGQAQPRRH
HRHRDRERPVVDEANENGETANGREGRHHVHHSRSKDPDGGRWREGKGERSRSRDGARRH
HHQSSLDEGGGGGGGGGPGEREHRPHHHSHRPAKEGNGTVNGGGGGEGRPRHKEGRSANR
DGECCSRGENGANGKRRRTHGSRGQSTAEGEGYRDTSVGERGHGYSDRYQDSKGDSLAIT
PKQCPGGPKGGGDRPEDSDNQRNVGKTGETSSHIPPVTITSPPGETTLITINSIDLETMP
MNTEKKTLEDLTQNGPRPILPYSSMFVFGQTNPVRRLCHYIVTMRYFEMCILVVIAMSSI
ALAAEDPVQANAPRNNVLKYLDYVFTGVFTFEMVIKMVDLGLLLHPGAYFRDLWNILDFI
VVSGALVAFAFSGSKGKDISTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNI
LIVYMLFMFIFAVIAVQLFKGKFFYCTDESKGLEKDCRGQFLDYDRDEVSAQPREWRKYE
FHYDNVLWAFLTLFTVSTGEGWPTVLKHSVDATFEDKGPSPGYRIEISIFYVVYFVVFPF
FFVNIFVALIIITFQEQGDKAMAECSLEKNERACIDFAINAKALTRYMPEDAQSFQYRMX
KFVVSAPFEYSIMIMIALNTVVLMMKFHGAPDFYEAMLKNLNIVFTALFSLECILKIIAF
GPLNYLKDAWNVFDFVTVIGSITDILVTEINDRLLNLSFLRLFRAARLIKLLRQGYTIRI
LLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIELNDDTAINRHNNFCTFLQALML
LFRSATGEAWHEIMLSCLSHRACEERSGNQGKECGSDFAYFYFVSFIFLCSFLMLNLFVA
VIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAACGRIKHLDMYQMLLHMSPPLGLGKK
CPPRVAYKRLVKMNMPIADDNTVHFTSTLMALIRTALEIKLGSGMVGQRLSDAELKKELA
TVWPSLSQKTMDLLVTPHKPNELTVGKLYAARMIFDYLKQRQAKKLQQSKIEALFKPLLP
LTHMQEKDMPPNSVEPPCEVQPQPLPDPVQARPSSNSLNNGGALPGHNRRSSSWVTESRD
VQRPKIKRVMSRDQSEDVPNLASPKESVEMKEMDTSAVSVPGDGSSLESHGRAVSMPRLN
AELQQSHSRHSPGIQLSPVPDASPMRRSVSTVAPQRPQEVNLRDYTLEKPSQERPPHHHH
HHRCHHRRKRDTEKKQRSLDRSMGGQPLSTAGAPGDPAAEPASGERGHDRGRSHERKHHA
SSAAEKHRYYSCDRYSSREHCHTKSATASCATSPSEGQDTSFNKQGSGWVKGSPVMLTSG
VSTPSRGRRQLPQTPLTPRPGVAYKTANSSPVHFASAQAGPPSLSPGRLSRGLSEHNALL
HSGTSPVPSPVTRISSEPFLAPPIGSPLCSLRDELAFFQDEPGPRAFGRPPRTAPPRVGG
LPLPPQQSLAVANGYHFTFGGSGSPSTGARVPRYYYEAEEDGWC
NT seq
6075 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcttcgaagatgatctttccggacggagaggggccatctggcctccaggcccc
ccaagcggccccagggtctacaagcaaacgatggctcaaagagccagaacaatggctata
tacaaccccatacctgttaagcaaaactgcctcactgtcaaccggtctctcttcatcttc
agcgaggataacataatacgaaaatatgccaaaaagattacagagtggcctccatttgag
tacatgatcctagccaccatcatagccaactgcatcgttctggccctggagcagcacctg
cctgctagtgacaagacgcccatgtcagaacgcctggatgatacagagccctacttcatt
ggaatattttgttttgaggccggcatcaagatcatcgcccttgggtttgcgtttcacaaa
ggcacctacctccgtaatggctggaatgtaatggattttgtggtcgtcttaacagggatt
ctggccacggccggggccgactttgatttacgaacactgaggncggtcagagtcttacga
cctctcaaactggtgtctggaatcccgagtcttcaggtggtgttgaagtccattatgaaa
gccatggtgcctctgctgcagataggcatgttgctgttttttgccatcctcatgttcgcc
attatcggcttggacttttacatgggcaagtttcaccggacctgcttcaggaatgacacc
ggtgagcagatggcagacttcccctgtggactggagaacccagccaggacctgccccagc
ggcaccctgtgtcaggagtactggctaggccccaactacggcatcactaacttcgactac
atcctgtttgccattctcaccgtcttccagtgcatcccatggagggctgggtggacatcc
tctacaacgtttaatttcgaggaggagacgccaacgactaactttgacacgttcccagca
gccattctcactgtcttccagatcctgacgggagaggattggaatgcagtgatgtaccat
gggatagagtcacaggggggcgttcggcgtggaatgttctcctcgatctacttcatcgtt
ctcaccctctttggaaactacactctcctcaatgtcttcttggccattgctgtggataac
cttgccaatgctcaggagctcactaaggatgaagaggagcaggaagaggccatcaataag
aagctggctatgcagaaggccaaggaggtaaaggtcagccccatgtctacggccaacatc
tccataacagcttttgtaaggcaccgacgaggtgcaaattctagcagctcgtccatctgc
agcgttaactcactcaaggagcagcagaagtctttgaagatgaggtctgtgtgggagcag
cgcaccacccagctgcgcaaacacaacgtgcgtgccagctccgaggccctgtacagcgag
atggaccccgaggagaaaatccgcatgacctccgccatgcacatccgcccggacatgatg
acccacctggaccgccccctggttgtcgagcctcacgacggccccggccagcccaagccc
cggaccccggaggaggccgaggccaccacggaccccggccaggcccagcctcgcaggcac
caccgccaccgggacagggagaggcccgtcgtcgacgaggccaacgagaacggggagacg
gccaacggcagggaggggaggcaccacgtgcaccacagccgcagcaaagaccccgacggc
ggcaggtggagggaggggaagggggagcgctcgcgcagccgcgacggggccaggaggcac
caccaccagagctctctggacgaggggggaggaggagggggtggaggaggcccgggggag
agggagcatcgcccccaccaccactcccacaggccggccaaggagggcaacggcaccgtc
aacggcgggggcgggggggagggccggccgcgccacaaagagggccgctcggccaatcgg
gacggggagtgctgctccaggggggagaacggggccaatgggaagagacgcaggacccac
ggctccaggggccaatccactgcggagggagaggggtacagagacaccagcgtcggggag
agaggccatggatacagtgacagataccaggactcaaagggagattccctggccatcacc
cccaagcagtgtcccggcggccccaaggggggcggtgaccgaccagaggactcagacaac
cagaggaacgtcgggaaaacaggagagacctcgagccacatcccccccgtcaccatcacc
tctccccctggggagaccaccctcattaccatcaacagcattgacttggagaccatgcct
atgaacacggaaaagaaaaccctagaggatcttactcagaacggccccagacccatccta
ccctacagttccatgtttgtgtttgggcaaaccaacccggtgaggcgtctgtgccactac
attgtgaccatgcgctactttgagatgtgtattctggtggtgatcgccatgagcagcatt
gctttggctgccgaggaccccgtccaggcgaatgccccacgcaacaacgtgctcaagtat
ttggattacgtgtttactggtgtttttacattcgagatggtcatcaagatggtcgacttg
ggcctcctgctccaccctggcgcctacttccgagacctgtggaacatcctggacttcatc
gtggtcagtggagcactggtggcgtttgcattttcagggagcaaaggcaaggacatcagc
accatcaaatctctcagggtgttgagggtccttcggcctctcaagaccatcaagcgtctg
cccaaactgaaggctgtgtttgactgcgtggtcaactctctgaagaacgtgctgaacatc
ctcatcgtgtacatgctgttcatgttcatctttgccgtcatcgccgtgcagctcttcaag
gggaagttcttctactgcaccgacgagtccaagggcctggagaaggactgcagagggcag
ttcctggactacgacagggacgaggtgtctgcccagcccagggagtggaggaagtatgag
ttccactatgacaacgtgctctgggctttcctcaccctcttcaccgtgtccactggggag
ggctggcccacagtcctgaagcactcggtggacgccaccttcgaggacaagggtcccagc
ccgggctaccgcatagagatctccatcttctacgtggtctactttgtggtctttcccttc
ttcttcgtcaacatcttcgtggccctcatcatcatcaccttccaggagcagggcgacaag
gccatggcggagtgcagcctggagaagaacgagagagcctgtatagactttgccatcaat
gccaaggccctgacccgctacatgccagaggatgcccagtccttccaataccggatgntg
aagttcgtggtgtcggctccattcgagtactccatcatgatcatgatcgccctcaacacg
gtggtgctcatgatgaagttccatggagctcccgacttctacgaggccatgctgaagaac
ctgaacatcgtcttcaccgccctcttctccctggagtgcatcctcaagatcatcgccttc
ggccctctgaactacctgaaggacgcgtggaacgtgttcgatttcgtcaccgtcatcggg
agcatcacagacatcctggtcacggagatcaatgatcgcctgctgaacctcagctttctg
aggctgttccgggcggctcgtctcatcaagctgctgaggcagggctacaccatccggatc
cttctctggaccttcgtacagtccttcaaggccctgccgtatgtttgccttcttattgcc
atgctgttcttcatctatgccatcatcggaatgcaagtgtttgggaacatcgagctcaat
gacgacacagccatcaatcgccacaacaacttctgtaccttccttcaagctctcatgctt
ctgttcaggagcgccacaggggaggcgtggcatgagatcatgctgtcctgcctgagtcac
cgggcatgcgaggagagatcggggaaccaggggaaggagtgtggcagcgactttgcctac
ttctacttcgtctccttcatcttcctctgctccttcctgatgctgaacctgtttgtggct
gtcatcatggataactttgagtacctgaccagagactcgtcgatactgggacctcaccac
ctggatgaattcatccgcgtttgggctgagtacgaccctgccgcctgtggtcgtatcaag
cacctcgacatgtatcagatgctgctacacatgtccccacccttaggtttgggaaagaaa
tgcccgccaagagtcgcctacaagcgcctggtcaagatgaacatgcccatcgccgacgac
aacacggtccacttcacctccactctcatggccctgatccgcacggccctggagattaaa
ctgggctcagggatggtgggccaacgtctgtctgacgccgagctgaagaaggagctggcg
acggtgtggcccagcctctcccagaagaccatggacctgctggtgaccccccacaagccc
aatgagctcacggttgggaagctatatgcagcccggatgatcttcgactacctcaagcag
aggcaagccaagaaacttcagcagagtaagatcgaggctctgtttaagccattgctgcct
ctgactcacatgcaggagaaggacatgcctccaaacagcgtggagcctccttgtgaagtc
cagcctcagcccctgccagacccggtccaggccagacctagcagcaactcccttaacaac
gggggtgctctgcccggccataatcgtcgatcgtcctcctgggtcacggagtctcgagac
gtccagaggcccaagattaagagagtcatgtccagggaccagtcagaggacgtcccaaac
ctagccagtcctaaggagtctgtggagatgaaggagatggatactagtgcggtttcagtg
cctggtgatgggtcttctctggaaagccatggaagggcggtgtctatgcctcgcctcaac
gctgagctgcagcagagccactctcgtcactcccctgggatccagctgtctcccgtccct
gacgccagccccatgaggcgctcggtttccaccgtggcaccccagcggccccaggaggtg
aacctgcgtgactacaccctggagaagccctcgcaggagaggccccctcaccaccaccac
caccatcgctgccatcaccgcagaaagagagacacagagaagaagcagaggtccctggat
agaagcatgggaggacagcctctgagcacagctggtgcgccaggcgacccggcggcggag
ccggcctccggagagcggggtcacgaccgcgggcgctcccacgagaggaagcaccacgcc
tcctcggcggcggagaaacaccgctactactcctgcgaccgctacagcagccgggaacac
tgccacaccaagtctgccaccgccagctgtgcgacctcccccagcgagggacaggacacc
agcttcaacaaacagggcagtggttgggttaaaggcagcccggtgatgttgacctcaggt
gttagcacgcccagccgtggccgcaggcagctcccccagacccccctgaccccccggcct
ggggtggcctacaagactgccaactcctcccccgtgcactttgcgtccgcccaggccggc
ccgcccagtctgagtcctggcaggttgagccgagggctgtcggagcacaacgccctcctg
cacagcggcacctcccccgtcccctcccccgtcacccgcatcagctccgagcccttcctg
gccccccccatcgggagccctctctgtagcctgcgggacgagctggcctttttccaggac
gagcctggccctcgcgccttcggacgcccgcctcggactgcgccgcctcgcgtggggggc
ctgcctctgcccccccagcaaagcctggcggtggctaacggataccatttcacctttggg
ggcagtggcagcccaagcaccggggccagggtgcccaggtactactatgaggcagaggag
gacggatggtgctag
DBGET
integrated database retrieval system
