Osmerus eperlanus (European smelt): 134015008
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Entry
134015008 CDS
T10927
Symbol
tncb
Name
(RefSeq) tenascin
KO
K06252
tenascin
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04510
Focal adhesion
oep04512
ECM-receptor interaction
oep04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134015008 (tncb)
04518 Integrin signaling
134015008 (tncb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134015008 (tncb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oep00536
]
134015008 (tncb)
Glycosaminoglycan binding proteins [BR:
oep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134015008 (tncb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
EGF_TEN
EGF_Teneurin
Fibrinogen_C
EGF_2
EGF_Tenascin
FN3_DSCAM-DSCAML_C
DUF7949
Fn3_Dep-1_3rd
Fn3_Dep-1_2nd
Pur_ac_phosph_N
EGF
FN3_Tor_3rd
fn3_2
hEGF
Motif
Other DBs
NCBI-GeneID:
134015008
NCBI-ProteinID:
XP_062310255
LinkDB
All DBs
Position
28:complement(7800549..7831607)
Genome browser
AA seq
1691 aa
AA seq
DB search
MGMKSLLLGYATVSILLHFSGAGLVKKVIRHRRETLMPPTSENVTLPNPDQPVVFNHVYN
INVPSTPLCSVDLDSPGATEIKPHNKVPQSDLQHMEHTVDGENQIVFTHRINIPKQACGC
DNQLPDLKDLLNRMEMLEAEVSSLRDQCSGGAGCCGAQVTGEVATKPYCNGRGNYSAETC
SCVCEPGWKGPNCSEPECPNDCQDQGRCVDGRCVCFEGFAGDDCSVELCPVDCGENGECI
DGACLCEEGFVGEDCSQTNCLNNCLGRGRCVDGECICDEPWTGFDCSELICPNDCYDRGR
CINGTCYCDEGFTGEDCGELTCPSNCNNRGVCVNGQCACNLGYSGEDCSKLTCPADCSER
GHCFNGRCICDPGFEGEDCSILSCPDNCNDRGKCVNGECICEAGYQGDDCGELSCPNNCL
NRGRCINGRCMCDKGFAGDDCSIKTCPKDCMGRGECVDGKCVCFLGFTGKDCGELTCPNN
CLNRGRCVNGQCVCSKGFTGEDCSEKTCPNNCLDRGYCVDGKCVCFEGFTGLDCSELTCP
GDCQDQGRCENGVCVCDEGFIGEDCSEVSPPKDLTVVEVTSETVDLSWVNEMTVTEYLVT
YVPTAPGGLELDLRVPGDQKIATIRELEPGIEYLISVYAILKNKKSVPVSARVATHLPEP
EGLKFKSVRDTSVEVQWDPLNIHFDGWNLIFRNTKEENGEIMNSLGWPETTFEQSGLGPG
QEYEVKLEVVKNKTRGPPAKKNVVTMIDGPNSVDVRDVTDTTALITWFHPVAQVDGVSVS
FGPSSDRADRDTVELSSSETQHHLGRLHPDTEYEVSLMARRGEMTSVPVYETFLTDLDAP
RDLQATELTDESITLEWRNSLARVDNYRIKYGPLSGGDHGELIFPSGPRDTSQAKITGLR
PGTEYGMGVTAVKEERESLPTTTNAVTALDAPKDLTATDVTETTMTLTWKRPQAKIDIYR
LVYVSVDGRKAEAVVQGGSVTHTLRNLSPGMLYTITIRAERGRRQSASTTISSPTEEKKP
EVYNIHISDVSWDSFLVSWQAEEGAFEGFVVELIDAEAGAEWQNHTLSANARSLGIEGLT
PSTWYKASLYGAYRGGLLEPMSAETITEAEPEVEELLVSDITPESFRLTWAAEEDVFDTF
VLMVRDSANLAQVQEVVIAGEERSTVITELSEDTEYQVEISGLILERRSKTVSELARTGL
GSPKGIRFSDVTDTSATVHWTVPRARVDNYRVTYVPIQGGSPKTLTVDGADSQTVLPNLI
PGVTYQVTVIAVKGQKESQPASDSVTTALDKPRGLTAVNITDSEALLLWQPAIATVDGYV
ISYSADTGAPVMERVSGNIVEFEMSSLTPATHYTVRVYAVRDAAKSAATTTEFTTDVDAP
QDLAASNVQTESAMLSWRAPRADITGYILSFESVDGTVREVVLSPTATSYNMAQLHASTE
YTVRLQAIAGPKRSRLVSTVFTTIGVLYRHPRDCSQALLNGDTVSGLYTIYLGGDEGQPI
QVYCDMTTDGGGWIVFVRRQSGKLEFFRNWKNYTSGFGDMNDEFWLGLSNLHKITAGGQY
ELRVDLRDKGELAYAQYDKFSISEPRTRYKVHVGGYSGTAGDSMTYHHGRPFSTYDHDND
IAVTNCALSYKGAFWYKNCHRVNLMGRYGDNSHSKGVNWFHWKGHEHSIEFAEMKIRPSN
FRNFEGRRKRS
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atggggatgaaaagccttctcctaggctatgcgaccgtgtcgatccttctccacttctct
ggtgccggcctggtgaagaaggtcatccgccaccgaagagagaccctgatgccccccacc
tcggagaatgtcaccctccccaaccctgaccaaccggtggtcttcaaccacgtctacaac
atcaacgttccctccacccccctctgctccgtggacctggactccccaggagccacagaa
attaagccccacaacaaggtcccccagtcggacctgcagcacatggagcacacggtggac
ggggagaaccagattgtcttcacccaccgcatcaacatccccaagcaggcctgtggctgc
gataaccagctaccagatctgaaggatctcctcaacaggatggagatgctggaggcggag
gtgtccagtctgagggatcagtgttctggtggggcgggctgctgtggagctcaagtcaca
ggtgaggtggccaccaagccctactgtaatggccgtgggaactacagcgctgagacctgc
agctgtgtgtgtgagcctggctggaaggggcccaactgctccgagcccgagtgccccaat
gactgccaggaccagggccgctgtgtggacggcaggtgtgtctgctttgagggctttgcc
ggtgatgactgcagtgtagagctgtgcccggtggactgtggggagaacggcgagtgcatc
gacggtgcctgcctgtgtgaggagggcttcgttggcgaggactgctcccagaccaactgc
ctgaacaactgcctgggccgtgggcgctgtgtggacggcgagtgcatctgcgacgagcct
tggacgggcttcgactgctctgagctcatctgccccaacgactgctacgatcgtgggcga
tgcatcaatggtacctgttactgcgatgaggggttcaccggtgaagattgcggtgagctc
acctgcccgagcaactgcaacaaccgtggggtctgcgtcaatggccagtgtgcatgtaat
ttaggttacagcggagaggactgctccaagctcacttgccccgctgactgcagtgagaga
ggacattgcttcaacggaaggtgcatctgcgacccgggcttcgagggtgaggattgctct
atcctgtcctgccctgacaactgcaatgacagaggcaagtgtgtcaatggcgagtgtatc
tgcgaagctggttaccaaggggacgactgcggcgagctctcctgccccaacaactgcttg
aaccgtgggcggtgtatcaatggccgttgcatgtgtgacaagggctttgccggagatgac
tgcagcatcaagacctgtcccaaagactgcatggggcgtggagagtgcgtggacggcaaa
tgtgtgtgcttcctcggtttcacaggcaaggactgcggagagctgacctgtcctaacaac
tgcctgaatcgaggccgctgtgtgaacggacagtgcgtgtgcagcaaggggttcactggg
gaggactgcagtgagaagacttgccccaacaactgtctggatcgaggctactgcgtggat
gggaagtgtgtgtgcttcgaaggcttcacaggcctcgactgttcggagctcacctgtccg
ggagactgccaggaccaaggtcgctgtgagaacggagtgtgtgtttgtgatgagggcttc
attggggaagactgctctgaggtctctccacctaaggacctgacagtggtggaggtcact
tcagagacggtggacctctcctgggtcaatgagatgacggtgaccgagtatctggtcacc
tatgtgcccaccgcccctgggggtctggagctggatctgcgggtgccaggagaccagaag
attgccaccatccgagagctagagcctggtatagagtacctgataagcgtctatgccatc
ctcaagaacaagaagagtgtgcccgtcagtgccagagtggcaacacatctccctgagcct
gaaggtctcaagttcaagtctgtgagggacacttctgtggaggtacagtgggaccccctg
aacatccactttgatggctggaacctcatcttcagaaacaccaaagaggagaacggggaa
attatgaactctctgggttggcccgagaccaccttcgagcagtcgggcttggggcctggt
caggagtacgaggtcaaactggaggtggtgaaaaacaagactcgaggaccaccagcaaaa
aagaacgttgttacaatgatcgatggccccaactcagtggatgtgcgcgacgtcactgac
accactgcactgatcacctggttccacccggtggcccaggtggatggggtgagcgtttct
ttcggtcccagtagcgaccgtgcagacagggacacagtggagctgtcctcctctgaaacc
cagcaccacctgggccgtctgcacccagacacggagtatgaggtgtcgctgatggcacgc
aggggggagatgaccagcgtgcccgtgtacgagacattcctcacagacctggacgccccc
agggacctgcaggctacggagctgactgacgagagcatcacgctggagtggaggaacagc
ctggccagagtagacaattaccgcatcaagtacggccctctgtctgggggagaccacgga
gagctgatcttcccctctggaccccgagacaccagccaggccaagatcacaggtctacga
cctggaacagagtatggaatgggtgtgaccgcagtgaaagaggagcgtgagagcctaccc
acaaccaccaatgcagtgacagcgctggatgctcctaaggacctgacagcaacggacgtg
acagagacaaccatgaccctgacctggaagagaccccaggctaagattgatatctaccgg
ctagtgtacgtgtctgttgatgggcgcaaggccgaggcggtggtccaggggggcagtgtg
acacacaccttgcggaatctgagccctggcatgctgtataccatcaccatcagggcagag
agaggccgcagacagagcgcctccaccaccatctcgtcccccacagaggagaagaaaccc
gaagtgtacaatattcacatttccgacgtgtcgtgggacagtttcctcgtgtcctggcag
gccgaggagggggcttttgagggctttgtggtagagctcattgatgcagaagcaggggcc
gaatggcagaaccataccttgtctgccaatgcccgcagtttgggcatcgaaggcctcacc
cccagcacctggtacaaggccagtctgtatggggcttacaggggaggccttctagagccc
atgtctgcagaaaccatcacagaggctgaaccagaggtggaagaacttctagtctccgac
atcacaccagagagctttaggctgacctgggctgcagaagaagatgtctttgatacattt
gtcctcatggtccgggactcagccaacctcgctcaagtacaggaggttgtcatagcgggc
gaggagagaagcacggttattaccgagctctctgaggataccgaataccaagttgagatc
tctgggctcattttggaacgacgctccaaaactgtgtcggagttggcaagaacaggcctt
ggctctccaaagggcatccgtttctcggatgtcactgatacctctgccacagttcactgg
acagtgcccagagcccgagtagacaactaccgtgtcacctatgtgcccattcagggagga
agtccaaagactctgacggtggatggagccgattcccagacagtcctgcccaacctgatc
ccaggtgtcacgtaccaggtcaccgtcattgctgtcaagggtcaaaaggagagccagcca
gcctcagacagtgtcaccacagctctggacaagcctcgtggcctgacggcagtcaacatc
acagacagtgaggctctgcttctatggcaacctgccattgctactgtagatggctacgtc
atctcctacagcgcagacactggggccccagtgatggagagagtgtcgggcaacattgtg
gagtttgagatgagctccctcacccctgccacacactacacagtcagggtatatgcagtc
agggatgctgccaagagtgctgctaccacaactgagttcaccactgatgtggacgccccc
caggacctggcagccagcaacgtccagacggagagcgccatgctgagctggagggcccca
cgggccgacatcacaggctacatcctcagctttgagtccgtcgacggcactgtcagggag
gtggtcttgagcccaacagccacctcgtacaacatggcccagctgcacgcctccaccgag
tacacagttcgcctgcaggccatcgccgggcccaagaggagccgcctcgtcagcactgtg
ttcaccaccattggtgtgctgtacagacaccccagggactgctcccaggccttgctgaat
ggggacactgtctcaggtctgtacactatctacctgggaggagatgagggccagcccata
caggtctactgtgacatgaccaccgatggaggtggatggatagtgtttgtgaggcgtcag
agtggaaaacttgagtttttccgtaactggaagaactacacttcaggcttcggcgacatg
aatgacgaattctggcttggtctgtccaacctgcacaagattacagcaggtggtcaatat
gagttgcgtgtggatctcagggacaagggagagctggcgtacgcccagtatgacaagttc
tccatctctgaaccccgcacacgctacaaggtgcacgttggaggctacagtggtactgct
ggtgattctatgacgtaccaccatggccgtccgttctcaacctatgaccatgataatgac
atcgctgttaccaactgtgccctgtcctacaagggtgccttctggtataagaactgtcat
cgcgtcaatcttatgggacgatatggagacaatagtcacagcaagggtgtgaactggttc
cactggaaaggccatgagcattcaattgagtttgccgagatgaaaatcaggccgtccaac
ttcagaaactttgagggaaggaggaaacgatcatga
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