KEGG   Osmerus eperlanus (European smelt): 134015415
Entry
134015415         CDS       T10927                                 
Symbol
casc3
Name
(RefSeq) protein CASC3
  KO
K14323  protein CASC3
Organism
oep  Osmerus eperlanus (European smelt)
Pathway
oep03013  Nucleocytoplasmic transport
oep03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:oep00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    134015415 (casc3)
   03015 mRNA surveillance pathway
    134015415 (casc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oep03019]
    134015415 (casc3)
Messenger RNA biogenesis [BR:oep03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     134015415 (casc3)
SSDB
Motif
Pfam: Btz
Other DBs
NCBI-GeneID: 134015415
NCBI-ProteinID: XP_062310911
LinkDB
Position
2:23079953..23088588
AA seq 792 aa
MADRRRRRRRASQDSEEDDESGSGSESARSGSPSSKSRVREPEPVEAPAVRVVPKNDAES
ECESEDGVGEAVLSDYESADPEENGSHSEGGEDDEGGERFSDEEEAKSAPEPKPATEDAP
AAVEEEGEGEEEEGEEEEGEEEGEVEEEQGETKELKSEEKGNLSGERQSGDGQESTDDPE
TQQGGKPGQKLDDDEDRKNPAYIPRKGLFFEHDVRGHAPEEERPKGRHRKLWKDEGRWEH
DRFREEEQAPKSRDELVAIYGYDIRNGGGSGDRSYRQRKPRHSTSPVRDKRWRDGAERPV
RTSWQGSTRSAPPAVPLHPPGPQPSAPPGSQRNNNTNNHPKSSPHPPPSRGFQGNRPSQA
HAQHRSDPRSSYRSPAETTHHRNLPGADGDRSGGPRGHGWGQQVERSPSVVVEDVRSEED
EEQASSAGVTTATTTTSSSQSVFHHHGNKAERDSGPASLPRRQEQRAGGGASGTAEPACP
VARDASPPPERPVERKSYSLARRTRSRPAELGKQASLEDPPLVPAPAAGGGKGEGWQGPA
QSQGDGPSQTGGLTGLDQDLARLSLAGQNWGPNPHSYLRAEMRGIPSPMHVSGAPPQYPN
MEELGVGANRAKRYSSQRQRAGPEPAPLHIGVMEGHYYEPMSFQGPIYAHGDSPAPLPPQ
GMLVQPEMHLPLPGHPGHPGLHPHQSGAPMPSPGLYAAPPVSMSPGQPPPQQLLAPPFYP
PPGVMTFSNTNYPYPAGASLPPMFNPQSQVYGGVTYYDTVQQQAQPKPSPPRRSSQPVTI
KPPPPEMAFAPE
NT seq 2379 nt   +upstreamnt  +downstreamnt
atggcggaccggcgaaggagaaggaggcgcgcgtcccaggacagcgaggaagatgacgaa
tctggttcgggttccgaaagcgcaaggtccggttcaccatcgtcaaagagccgagtgagg
gagcccgaaccggttgaggcgccagccgttcgcgtggtaccgaaaaacgacgccgaatcc
gagtgtgagagtgaagatggcgtaggtgaagctgttctttctgactatgagagcgctgat
cctgaagagaatggctcccattcagaggggggagaggacgacgagggaggcgagcgcttc
agcgacgaagaggaggccaaatctgccccggagcccaagcccgccacagaggacgcccct
gctgccgtggaggaggagggagagggcgaggaggaggagggcgaggaggaggagggcgag
gaggagggggaggtagaggaggagcagggggagactaaagagttgaagtcggaggagaag
ggcaacctgtccggagagagacagagtggggatggacaggagagcaccgacgacccagag
acccagcaggggggtaaaccaggccagaagctggacgacgacgaggacaggaagaacccc
gcctacatcccccgcaagggcctgttcttcgagcacgacgtccgaggccacgcccccgag
gaggaaaggccgaagggtcgccacaggaagctgtggaaggacgaggggcgctgggaacac
gacaggttccgcgaggaggagcaggcacccaagtcacgtgacgaactggtcgccatctac
ggttacgacatccgcaacggaggagggtcaggtgaccgctcgtaccggcagcgcaagccc
agacacagcacgtcccccgtcagggacaagcgctggcgggacggggcagagaggcccgta
cgtacctcctggcaggggtccacccgcagcgcccccccggccgtgcccctgcaccccccc
ggcccccagccctccgcgccccccggctcccagcgcaacaacaacaccaacaaccacccc
aaatcgtccccgcacccgccaccctccagaggtttccagggcaaccggcccagccaggcc
cacgcgcagcaccggagcgatccccggtccagctacaggagtcccgcagagaccacccac
caccggaaccttccgggggccgacggggatcgctccggggggccccggggccacggctgg
gggcagcaggtggagcgcagcccctcggtggtggtggaggacgtccgcagcgaggaggac
gaagagcaggcgtcctccgccggcgtaaccacagcaaccaccaccacgtcgtcgtcgcag
tccgtgtttcaccaccacggcaacaaggccgagcgggactcggggccggcctcgttgcca
cggagacaagagcagcgggccgggggaggggcttccggcacggcggagccggcgtgtccc
gtggcgcgcgacgcctcgccgccccccgagaggccggtggagaggaagtcgtactccctg
gctcgcaggactcgctcccggcccgcagagctggggaagcaggcctccctggaggaccct
cccctggtcccggcccccgcagccggggggggcaagggcgagggctggcagggccccgcc
cagagccagggggatggaccgagccagactggggggctgacgggcctggatcaggaccta
gccagactgagcctggcggggcagaactgggggccgaaccctcactcctacctgcgcgca
gagatgaggggtatccccagccccatgcacgtttccggggcgcccccccagtaccccaac
atggaggagctgggggtgggggccaaccgggccaagcgctactcctcccagcgccagaga
gccggccccgaaccggccccactgcacatcggcgtcatggagggccactactacgagccc
atgtcgttccaaggaccaatctacgcgcacggggatagccccgcccctctgccgccccag
ggcatgctggtccaaccagagatgcacctccccctcccagggcaccctggtcacccaggt
ctgcacccccaccagtcaggggcccccatgcccagccccggcctctacgccgccccgccc
gtctccatgtctccaggacagcccccccctcagcagctgctggctccgcccttctaccct
cctcccggggtcatgaccttcagcaacaccaactacccctaccccgctggggctagtctg
ccacccatgttcaaccctcagtcccaggtgtacggtggggtgacctattacgacactgtc
cagcagcaggcccagcccaagccctcgcccccccgccgctcctcccagccggtcaccatc
aagcccccgcccccggagatggccttcgcccccgagtga

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