Osmerus eperlanus (European smelt): 134015415
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Entry
134015415 CDS
T10927
Symbol
casc3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03013
Nucleocytoplasmic transport
oep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134015415 (casc3)
03015 mRNA surveillance pathway
134015415 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oep03019
]
134015415 (casc3)
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
134015415 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
134015415
NCBI-ProteinID:
XP_062310911
LinkDB
All DBs
Position
2:23079953..23088588
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AA seq
792 aa
AA seq
DB search
MADRRRRRRRASQDSEEDDESGSGSESARSGSPSSKSRVREPEPVEAPAVRVVPKNDAES
ECESEDGVGEAVLSDYESADPEENGSHSEGGEDDEGGERFSDEEEAKSAPEPKPATEDAP
AAVEEEGEGEEEEGEEEEGEEEGEVEEEQGETKELKSEEKGNLSGERQSGDGQESTDDPE
TQQGGKPGQKLDDDEDRKNPAYIPRKGLFFEHDVRGHAPEEERPKGRHRKLWKDEGRWEH
DRFREEEQAPKSRDELVAIYGYDIRNGGGSGDRSYRQRKPRHSTSPVRDKRWRDGAERPV
RTSWQGSTRSAPPAVPLHPPGPQPSAPPGSQRNNNTNNHPKSSPHPPPSRGFQGNRPSQA
HAQHRSDPRSSYRSPAETTHHRNLPGADGDRSGGPRGHGWGQQVERSPSVVVEDVRSEED
EEQASSAGVTTATTTTSSSQSVFHHHGNKAERDSGPASLPRRQEQRAGGGASGTAEPACP
VARDASPPPERPVERKSYSLARRTRSRPAELGKQASLEDPPLVPAPAAGGGKGEGWQGPA
QSQGDGPSQTGGLTGLDQDLARLSLAGQNWGPNPHSYLRAEMRGIPSPMHVSGAPPQYPN
MEELGVGANRAKRYSSQRQRAGPEPAPLHIGVMEGHYYEPMSFQGPIYAHGDSPAPLPPQ
GMLVQPEMHLPLPGHPGHPGLHPHQSGAPMPSPGLYAAPPVSMSPGQPPPQQLLAPPFYP
PPGVMTFSNTNYPYPAGASLPPMFNPQSQVYGGVTYYDTVQQQAQPKPSPPRRSSQPVTI
KPPPPEMAFAPE
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcgaaggagaaggaggcgcgcgtcccaggacagcgaggaagatgacgaa
tctggttcgggttccgaaagcgcaaggtccggttcaccatcgtcaaagagccgagtgagg
gagcccgaaccggttgaggcgccagccgttcgcgtggtaccgaaaaacgacgccgaatcc
gagtgtgagagtgaagatggcgtaggtgaagctgttctttctgactatgagagcgctgat
cctgaagagaatggctcccattcagaggggggagaggacgacgagggaggcgagcgcttc
agcgacgaagaggaggccaaatctgccccggagcccaagcccgccacagaggacgcccct
gctgccgtggaggaggagggagagggcgaggaggaggagggcgaggaggaggagggcgag
gaggagggggaggtagaggaggagcagggggagactaaagagttgaagtcggaggagaag
ggcaacctgtccggagagagacagagtggggatggacaggagagcaccgacgacccagag
acccagcaggggggtaaaccaggccagaagctggacgacgacgaggacaggaagaacccc
gcctacatcccccgcaagggcctgttcttcgagcacgacgtccgaggccacgcccccgag
gaggaaaggccgaagggtcgccacaggaagctgtggaaggacgaggggcgctgggaacac
gacaggttccgcgaggaggagcaggcacccaagtcacgtgacgaactggtcgccatctac
ggttacgacatccgcaacggaggagggtcaggtgaccgctcgtaccggcagcgcaagccc
agacacagcacgtcccccgtcagggacaagcgctggcgggacggggcagagaggcccgta
cgtacctcctggcaggggtccacccgcagcgcccccccggccgtgcccctgcaccccccc
ggcccccagccctccgcgccccccggctcccagcgcaacaacaacaccaacaaccacccc
aaatcgtccccgcacccgccaccctccagaggtttccagggcaaccggcccagccaggcc
cacgcgcagcaccggagcgatccccggtccagctacaggagtcccgcagagaccacccac
caccggaaccttccgggggccgacggggatcgctccggggggccccggggccacggctgg
gggcagcaggtggagcgcagcccctcggtggtggtggaggacgtccgcagcgaggaggac
gaagagcaggcgtcctccgccggcgtaaccacagcaaccaccaccacgtcgtcgtcgcag
tccgtgtttcaccaccacggcaacaaggccgagcgggactcggggccggcctcgttgcca
cggagacaagagcagcgggccgggggaggggcttccggcacggcggagccggcgtgtccc
gtggcgcgcgacgcctcgccgccccccgagaggccggtggagaggaagtcgtactccctg
gctcgcaggactcgctcccggcccgcagagctggggaagcaggcctccctggaggaccct
cccctggtcccggcccccgcagccggggggggcaagggcgagggctggcagggccccgcc
cagagccagggggatggaccgagccagactggggggctgacgggcctggatcaggaccta
gccagactgagcctggcggggcagaactgggggccgaaccctcactcctacctgcgcgca
gagatgaggggtatccccagccccatgcacgtttccggggcgcccccccagtaccccaac
atggaggagctgggggtgggggccaaccgggccaagcgctactcctcccagcgccagaga
gccggccccgaaccggccccactgcacatcggcgtcatggagggccactactacgagccc
atgtcgttccaaggaccaatctacgcgcacggggatagccccgcccctctgccgccccag
ggcatgctggtccaaccagagatgcacctccccctcccagggcaccctggtcacccaggt
ctgcacccccaccagtcaggggcccccatgcccagccccggcctctacgccgccccgccc
gtctccatgtctccaggacagcccccccctcagcagctgctggctccgcccttctaccct
cctcccggggtcatgaccttcagcaacaccaactacccctaccccgctggggctagtctg
ccacccatgttcaaccctcagtcccaggtgtacggtggggtgacctattacgacactgtc
cagcagcaggcccagcccaagccctcgcccccccgccgctcctcccagccggtcaccatc
aagcccccgcccccggagatggccttcgcccccgagtga
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