Osmerus eperlanus (European smelt): 134015658
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Entry
134015658 CDS
T10927
Symbol
smarca4a
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
134015658 (smarca4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oep03021
]
134015658 (smarca4a)
03036 Chromosome and associated proteins [BR:
oep03036
]
134015658 (smarca4a)
Transcription machinery [BR:
oep03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
134015658 (smarca4a)
Chromosome and associated proteins [BR:
oep03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
134015658 (smarca4a)
Chromatin remodeling factors
BAF complex
134015658 (smarca4a)
PBAF complex
134015658 (smarca4a)
GBAF(ncBAF) complex
134015658 (smarca4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
134015658
NCBI-ProteinID:
XP_062311214
LinkDB
All DBs
Position
2:24667561..24844328
Genome browser
AA seq
1634 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPSPGAMMGPSPGPSPGSGHTMMGPSPGPGPSPGSTHTMMGP
SPGPPGPGQAHPPQGPGGYPQENMHQMHKPMEGMHKEAVPDDPRYAQMKGMRPGGHSGMG
PPPSPLDQHSQGYPSPLGGSDHAPSPVPANGPPPGPMMPSGPMEGSGDPQALGAPGRGGA
PGPGAGGPAPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQPPLPNM
AAGPGAGPGAGPGPAQANYNRPHGMGGPTMPPPGPSGPPSMQGPPTNGPPKPWPEGPMVN
AAAPSSAPQKLPPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPAQPPPMVLHQKQNRI
TPIQKPRGLDPVEILQEREFRLQARIAHRIQELEQLPGSLAGDLRTKANIELKALRLLTF
QRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKH
QEYLNSILQHAKDFKEYHRSMAAKLQKATKAVATYHANTEREQKKENERIEKERMRRLMA
EDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAVQALKDKKKKKKKKKPENT
EGGSGLGPDGEPLDESSQMSDLPVKVIHMDSGKILTGLEAPRAGQLEAWLEMNPGYEVAP
RSDSEDSGSEEDEEEEEEPQSSKATPPEEKKKIPDPDTEDVSEFDVRHIIEHAKQDVDDE
YGSAAFARGLQSYYAVAHAVTERVDKQSTLLINGQLKQYQIKGLEWLVSLYNNNLNGILA
DEMGLGKTIQTIALITYLMEMKRINGPFLIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSP
QARRAFVPILRSGKFNVLLTTYEYIIKDKQVLAKLRWKYMIVDEGHRMKNHHCKLTVVLN
THYLAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNE
EETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLL
TDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGYTGGVVSGPDLYRS
SGKFEVLDRILPKLRVTNHKVLLFCQMTTLMTIMEDYFAYRNFKYLRLDGTTKAEDRGML
LKTFNDPASEYFVFLLSTRAGGLGLNLQSADTVVIFDSDWNPHQDLQAQDRAHRIGQQNE
VRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE
ACPQGGWRAGGTWVGEEDEVPDDETVNQMIARSEEEFEQFMRMDLDRRREEARNVKRRPR
LMEDEELPTWIMKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQWLKAIEEGT
LDEIEEEVRHKKTTRKRKRDRDPDLPGPATPSSSGGRGRDKEEEGKKTKKRGRPPAEKLS
PNPPSLTKKMKKMVDAVIKYKDGSNGRQLSEVFIQLPSRKELPEYYELIRKPVDFRKIKD
RIRSHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKVEKEEDSEG
EDSEEEEEELDEGSESESRSVKVKIKLGRKEREKERGRSQRRRGRGSRAKPVVSDDDSEE
EQEEERSASGSEED
NT seq
4905 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccggacccccctatgggaggaacccctcgtccggggccctccccaggcccc
tctcccggggccatgatgggccccagccccggcccctcacctggctccggccacaccatg
atgggccccagccccggcccgggcccatcgcctggctccacgcacaccatgatgggcccc
agccctggcccccctggccctgggcaggctcaccccccccaggggcccggggggtacccc
caggagaacatgcaccagatgcacaaacctatggagggcatgcataaggaggcggtgcct
gatgaccctcgctacgcccagatgaagggtatgagaccaggggggcacagcggcatggga
ccccctcccagccccctggaccagcactcccagggatacccttcccctctggggggctcg
gaccacgccccaagccctgtcccggccaacggcccaccccccggccccatgatgccgtcc
ggcccgatggagggcagtggggatccccaggcactaggggcccctggccgcgggggggcc
ccaggccccggtgctgggggtcctgctcccttcaaccagaaccagctgcaccagctccgg
gctcagatcatggcctacaagatgctggcgcggggccagcccctcccagaccacttgcag
atggctgtgcaggggaagaggcccatgcctggcatgcagcagccgcccctacccaacatg
gctgccggaccgggggcggggccaggggcggggcccgggcctgctcaggccaactataac
agaccacacggtatgggaggaccgaccatgcccccccctggcccctccggaccccccagc
atgcagggcccccccaccaacggcccccccaaaccttggcctgaaggccccatggtgaac
gccgctgctccatccagcgccccccagaagctgccccccccccagcccaccggccgcccc
tcccccgcccccccctccgtgcccccggccgcctcccccgtcatgcccccccagacccag
tcccccggccagcctgcccagcccccccccatggtgctgcaccagaagcagaacaggatc
acacccatccaaaagcccagaggactggaccctgtggagatcctacaggagagagagttc
aggctccaagctcgtatcgcccaccgcatccaggagttggagcagcttcctggctctctg
gccggagacctgaggactaaggccaacatcgagctgaaggccctccgcctcctcaccttc
cagagacagctgcgtcaggaggtggtggtgtgcatgcgcagggacacagcgcttgagacc
gctctgaacgccaaggcctacaagcgcagcaagcgccagtccctgagggaggcgcgcatc
acagagaagctggagaagcagcagaagatcgagcaggagaggaagcgccggcagaagcac
caggagtacctgaacagcatcctgcagcatgccaaggactttaaggagtaccaccgctct
atggctgccaagctgcagaaggccaccaaggccgtggccacctaccacgccaacacggag
cgcgagcagaagaaggagaacgaacgcattgagaaggagaggatgaggaggctgatggca
gaggacgaggagggctacaggaagctgatcgaccagaagaaagacaagcgtctggcctac
ctgctgcagcagaccgatgagtacgtggccaacctcacggagctggtccgcgcccacaag
gccgtgcaggcgctgaaggacaagaagaagaaaaagaagaagaagaagccagagaacaca
gagggggggtctggactgggtcctgatggagagcccctggatgagagcagccagatgagt
gacctgccggtgaaggtgatccacatggacagtggcaagatcctgacggggctggaggcc
cccagggccgggcagctggaggcctggctggagatgaaccctgggtacgaggtggcgccc
cgctcagacagtgaggacagcggctcagaggaggacgaggaggaggaggaggagccacag
tcgtccaaggccacgcccccagaggagaagaagaagattccagacccggacacagaggac
gtgtcagagtttgacgttcgccacatcatcgaacatgccaagcaggacgtggatgatgag
tacggcagcgctgccttcgcccgcggcctgcagtcctactacgccgtggctcacgccgtc
accgagagagtggacaagcagtccaccctgctgatcaatggacagctcaaacagtaccag
atcaagggtttggagtggctggtgtctctgtacaacaacaacctgaacgggatcctggct
gatgagatgggtctgggcaagaccattcagaccatcgctctcatcacctacctgatggag
atgaaacgcatcaacggacctttcctcatcatcgttccactctcgactctgtctaactgg
gtgtatgagtttgataagtgggctccatcggtggtcaaggtgtcctacaagggatctcca
caagcgaggcgtgcgttcgtccccatcctgcgcagcggcaagttcaatgttctgctgacc
acctacgagtacatcatcaaggacaagcaggtcctggctaagctgcgttggaagtacatg
atcgtggatgagggtcaccggatgaagaaccaccactgtaagctgacggtggtgctgaac
acacactacctggccccgcgccgcctgctgctgacgggcaccccgctgcagaacaagctg
cccgagctctgggcgctgctcaacttcctgctgcccaccatcttcaagagctgcagcacc
ttcgagcagtggttcaacgcccccttcgccatgactggggagaaggtggacctgaacgag
gaggagaccatcctgatcatcaggcgtctccacaaggtgctccgccccttcctgctgcgc
cgcctcaagaaggaagtggaggctcagctacctgagaaggtggagtatgtgatcaagtgt
gacatgtcagctctgcagagggttctgtacagacacatgcaggccaagggggtgctgctg
accgacggctctgagaaggacaagaagggtaaaggtggaaccaagactctgatgaacacc
atcatgcagctgaggaagatctgcaaccatccttacatgttccagcatatagaggaatcc
ttctctgagcacctgggctacacaggaggagtagtgagtgggccggacctataccgctcc
tcaggaaagtttgaggttctggaccgtattctacccaagctgagggtcaccaaccacaag
gtgctgctcttctgtcagatgaccaccctcatgaccatcatggaggactacttcgcctac
cgcaactttaaatacctccgcctggacgggaccaccaaggcggaggacaggggcatgctg
ctgaagacgtttaatgaccctgcgtcagagtattttgtgttcctgctgtcgacgcgtgcg
ggagggctgggcctcaacctgcagtctgctgacacggtcgtcatcttcgactcagactgg
aaccctcaccaggacctccaggcccaggacagggcccaccggattgggcagcagaacgag
gtgcgcgtgctgcggctttgcacggtcaacagcgtggaggagaagatcttggcggcggcc
aagtacaagctgaacgtggaccagaaggtcatccaggcgggcatgttcgaccagaagtcg
tcgagccacgagcgccgggccttcctgcaggccatcctggagcatgaagagcaggatgaa
gcctgcccccaggggggctggcgggcaggggggacgtgggtgggtgaggaagatgaggtc
cctgatgatgagacagtcaaccagatgatcgctaggagcgaggaggagtttgaacagttc
atgcgtatggacctggaccggcgccgtgaggaggcccggaacgtgaagcgccggcctcgc
ctgatggaggacgaggagctgcccacctggatcatgaaggacgacgcggaggtggagcgg
ctcacctgcgaggaggaggaggagaagatgtttgggcgcggctcccgtcagaggaaggag
gtggactacagtgactcactcaccgagaaacagtggctcaaggcaattgaggagggcacc
ctggatgagatcgaggaggaggtacgccacaagaagaccaccaggaagaggaaaagggac
cgcgaccccgacctcccggggccggccacgcccagctccagcggggggcggggcagagat
aaggaggaggaagggaagaagaccaagaagagggggcgcccccctgcggagaagctgtcc
cccaaccccccctctctcaccaagaagatgaagaagatggtggacgccgttattaagtac
aaggacggcagtaatggccgccagctgagcgaggtgtttatccagctgccctccaggaag
gagctacctgagtactatgagctcatcaggaagcctgtggacttcaggaagatcaaggat
cggatccgcagtcataagtaccgcagtctgaacgacctggagaaggatgtgatgctgctc
tgtcagaacgcccagaccttcaacctggagggatctctgatctacgaggactccatcgtg
ctccagtcagtgttcaccagcgtgaggcagaaggtggagaaggaggaggacagcgagggg
gaggacagcgaggaggaggaggaggagctggatgaaggctcagaatctgaatctcgctcg
gtgaaggtgaagatcaagcttggcaggaaggagagggagaaggagagggggcggagccag
cgccgcagggggcggggctccagggccaagcccgtcgtcagcgacgacgatagtgaggag
gagcaggaggaggagcgttctgccagcggcagtgaagaggactga
DBGET
integrated database retrieval system
