Osmerus eperlanus (European smelt): 134015727
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Entry
134015727 CDS
T10927
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134015727 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oep03041
]
134015727 (ddx5)
03009 Ribosome biogenesis [BR:
oep03009
]
134015727 (ddx5)
Enzymes [BR:
oep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134015727 (ddx5)
Spliceosome [BR:
oep03041
]
Complex A
U1 snRNP components
U1 related factors
134015727 (ddx5)
Complex B
134015727 (ddx5)
Ribosome biogenesis [BR:
oep03009
]
Eukaryotic type
Pre-60S particles
Helicases
134015727 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Utp25_C
Motif
Other DBs
NCBI-GeneID:
134015727
NCBI-ProteinID:
XP_062311257
LinkDB
All DBs
Position
2:25023368..25029710
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AA seq
632 aa
AA seq
DB search
MPGFSDRDRGRDRGYGSGPPRFGSGGGGGRGGGGGKFGNPGERLRKKHWNLDELPKFEKN
FYQPHPDVTRRSPQEVEQYRRTKTVTVKGRECPNPIMKFHEASFPSYVMDVINKLSWTEP
TPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTR
ELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEY
VQINVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFVETKRRCDEI
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYD
YPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQAGDLVAVLREANQAINPKLLQMAED
RGGRSRGGRGGGFRDDRRDRYSSGGRRDFGGSFRDRDSDRGFDSGAKKVFGTNTQNGGYG
SGANGFGGGAGGGANGFGGGAGGGGSYGSNGQSSYSSGQTGAFGGQSFQATPFSAQGAGQ
NGLSHAPFPFPQTPQQPAPPMVPYPMPPQFPQ
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgccaggattttccgacagagatcgtggtagagatagagggtatggcagcggtccccca
cgttttggcagtggcggtggaggcggccggggaggcggaggtgggaaatttggcaatccc
ggagaaaggctgcgcaagaagcactggaacctcgacgaattacccaagttcgagaagaac
ttttaccaaccgcaccccgatgtcacgcggagatccccgcaagaggtggaacagtacaga
agaaccaagactgtcacagtgaagggcagggagtgccccaaccccatcatgaagttccat
gaggctagctttccatcctatgtgatggatgtgatcaacaagctaagctggactgagccc
acccccatccaggctcagggctggccgctggccctcagtgggaaggacatggtgggcatt
gcccagaccggctctgggaagaccctctcttacctgctgccagccatcgtgcacatcaat
caccaacccttcctggagcgtggagacggacccatctgcctggtcctggcccccaccaga
gagctagctcaacaggtccagcaggtggcagcagagtatggccgagcatcacgcctcaag
tcaacctgcatctacggaggggcgcccaagggaccccagatccgtgacctggagagaggt
gtggagatctgcatcgctacgcccggcaggcttatcgactttctggagtcagggaagacc
aacctgcgcaggtgcacatacctggtgctggacgaggctgacaggatgctggacatgggc
ttcgagccgcagatacggaagattgtagatcagatccgtcctgaccgccagaccctcatg
tggagcgccacctggcccaaggaggtgcgccagctggcggaagacttcctgaaggagtat
gtccagatcaacgtgggcgctctacagctcagcgccaaccacaacatcctgcagattgta
gatgtctgcaacgacggcgagaaggaggacaaactgctgcgtctcctggaggagatcatg
agcgagaaggagaacaagaccatcatcttcgtggagacgaagcgcaggtgtgatgagatc
accaggaggatgaggagggatggttggccagcaatgggtatccatggagacaagagccag
caggagagagactgggtgttgaatgagttcaagtacggcaaagcccccatcctcatcgcc
actgacgtggcctccaggggtctagatgtggaggacgtgaagtttgtcatcaactacgac
taccccaacaactcagaggactatattcaccgcatcggccggacggctcgcagccagaag
acgggcaccgcctacaccttcttcacgcccaacaacatgcgccaggcgggggacctggtg
gccgtgctccgcgaggccaaccaggccatcaaccccaagctgctccagatggccgaagac
agaggagggcgttcaaggggaggcagaggtggagggtttagagacgaccggcgcgaccgc
tactcgtccggaggcaggcgagactttggcggtagttttagggatcgggacagcgataga
ggtttcgacagcggagcaaagaaggtgtttggcaccaacacacagaacgggggctacgga
agcggggctaacgggtttggtggcggggcagggggcggggctaacgggtttgggggcggg
gcagggggcggagggagctacgggagcaacggacagtccagctacagttctggccagacg
ggggcgttcgggggacagagcttccaggccacgcccttctctgcgcagggggctgggcag
aatggcctgagccatgcccccttccccttcccccagactcctcagcagcctgcccccccc
atggtgccctaccccatgcccccacagttcccacagtaa
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