Osmerus eperlanus (European smelt): 134017099
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Entry
134017099 CDS
T10927
Symbol
col6a3
Name
(RefSeq) collagen alpha-3(VI) chain
KO
K06238
collagen type VI alpha
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04510
Focal adhesion
oep04512
ECM-receptor interaction
oep04518
Integrin signaling
oep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134017099 (col6a3)
04518 Integrin signaling
134017099 (col6a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134017099 (col6a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134017099 (col6a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oep04147
]
134017099 (col6a3)
00536 Glycosaminoglycan binding proteins [BR:
oep00536
]
134017099 (col6a3)
Exosome [BR:
oep04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
134017099 (col6a3)
Glycosaminoglycan binding proteins [BR:
oep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134017099 (col6a3)
Hyaluronan
Extracellular matrix or blood plasma proteins
134017099 (col6a3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
fn3
vWA_SIBA-E
FN3_DSCAM-DSCAML_C
DUF3201
Motif
Other DBs
NCBI-GeneID:
134017099
NCBI-ProteinID:
XP_062312405
LinkDB
All DBs
Position
3:2198958..2281010
Genome browser
AA seq
3172 aa
AA seq
DB search
MAKRRLMPLCALVCFLFAGLLTKLDAQEDCAQGLPADIYFLVDSSWSMGQENFEYVRQFL
YRVVKALQQGGGSRFKFALVQYSGSPKTEFQLNTYQSFREVLGHIEAMVYRGGGTRTGLG
LDFLIRAHLNAASGSRAGDGVTQVVVVLTDGRSQDDVAEPAQVLRLAGVEVFAVGVQDAV
DWELGEMASEPRDTHVFSVDTFTALAGIIQDLVVGLCGAVTLAGGGAPVALTAPMSVEVR
RLAGDVTAQESADLVLLIDGSENIGAANFPRVRDLAIRIIQGLDVGRDKIRVAVVQYGAN
PEIKIYLNSYENKAAVLDAVKALTFMGGDEANLGAALEEVAEHLLIQVAGGRAEEGVPQA
LVIISAGPSTDDTGVGDRALKQSNVITFGVVVGAEATAELETVTTDKSFLLSAPDFSAVA
VMGDQLLPYINGVAQRTIVIQNEFTEALEVGNRDIIFLIDSTMGSTIINAIREFIRRFVE
TMPIGPGEVQVGVVQFSSTPRSEIDLNAFGTKEDLLGALGRIKPKPGQEVNIGAALNFVR
TNMLREEKGSRIQQGIPQLVLLMTTKKSSDSVEQPSEELQRMGVLTLAAGSKTADEQELK
RIAFAESLVFMLKDFRQLLRQPKLIVSPLSTLTGVVVTEGPTEPVVEITTVQTQRMVRDI
VFLVDGSSYTESNFRYVQEFIAEVVNQLDVRPDRVQIGLMQFAGNPKIEFYLNTFSSKQD
VLNSVSQLRGVGGSILNTGAAMDYALANMFQASTGSRKRQGVQQVLVLVTGGPSQDQVKR
IADKVALAGVLTFTVSSGQADSALMKSVAFVPNLAYHERSWTGLANVVGQIMTPLITVVG
DTDVTQGEVIEEVTGGERDVAFLIDGSDNVRADFSYIRDFILKVIEPLDIGMDRVRISVV
QQSERPTANFYLNTYQNKDEVMRAVNSLTPAGGRSLNTGVALKFMKDTILSDKHGSRAAQ
NVPQFMIVLSGSKSKDSVKESAVALKTDGVVPFGVGVKDADRKQIEAISHNPSFAFNVKD
FSELSTIPQKLNSYVSLPKEQLQEVLLEAESQGPKKDVVFLIDGSDNVGREFPIIQEFIR
RVVENLNVGENKIRIGVVQYGDSPSADIYLNSHTTKEGVMNAVRSLRQHGGRQRNLGQAV
EFVSRDVLTAPRGGRKQEGVHQFVIVVSGGSSTDDVRQAATLLKQSGVLPFSIGTRDASQ
QELQMISYVPKFAYTVDDFPGLYTVQENLISTLTELSDEEIARLHPVFPSFDVTTTVVTT
GGDKRDVVFLIDGTTAVRNEFPAIRDMINRVVGKLDVGLDRVRVSVVQYSDDAKVEFLLN
EFSTKEEVRQAVSRLRSRGGNQLNTGRALDWVSKNIYQRSAGSRIEDAVPQFLILVTGGK
SSDDVSGPANQLKTNLVAPLAIGARNADPNELRQIALKPELTYTISNFGQLPSVEQQLIT
SVNTMTTADISTSFDPSKGVRNLNMGRKDIIFLVDGSDTTGSSGIAHIRDFILNIVQQLN
VQPDHVRVSVVQYSDKVKTEFSLNSHNNKPDVLSAIKRLRQMGGRSSNLAEAIEHVIRNE
LKASAGVRLADASQHLVVLTGGRSTSDLSVYGPLLKGSRVNCIGIGAGAADARQLKQIAT
SSEDVLQVPTFPGLPVIREKFIARLNGTIPEEPPTDYEDPNLPKAKAADIVFLVDGSINL
GKDNFKEVMDFILNLIDLFFTERDKLQIGLAHYSTDMTDVFFLNTYKDKDDIISAISRTE
YKGGRKINTGAAIRHVQQNHFIKEKGSRKDEGIPQILMIVTGGRSSDDGKSAALALKATG
VRIYAVGVGNIEDELIDLGSEATTVARASTFLELSELNEQILETLDDEVKGVKLCTGVPD
SVKSCNVEVLVGFDVSAQNIFAAQTNLQTKMGAILQRISKMASISCSSGQIPSVHVGMLA
MDSASEPVMLEFTDNADELFEAFKALRNSGPYLLNGKTITAYNTRFKSRPADTTKVVIHL
TDGLDGQYSEMKRRVEELRLSGVSSFILVGLERVPRFEEAVLLEFGRGFRYTRPLRVNIM
DLDYELMEELDNIAERECCAVPCKCTGTRGDRGGVGLPGPKGGPGAVGYPGHPGDEGGPG
DRGPPGVNGTQGFQGCPGQRGVKGSRGYSGEKGDFGEIGLDGINGEEGTSGIVGPPGDRG
NPGRRGPKGLKGKAGDIGGTGIRGDPGATGLDNNEPGPKGDLGDAGPVGEAGQDGTRGGA
GEPGRRGADGRRGAPGPAGPLGKPGADGLQGEPGIGGSRGPAGPTSTPGIRGEDGNPGPR
GPGGAQGPGGDKGRRGTVGRKGEPGDSGPKGIVGPLGPRGEPGEDGRDGFGIPGPKGRRG
DEGFPGFPGPKGAAGDAGTPGGPGRHGNRGQTGVSGDIGSPGQKGDVGYPGSYGQKGPRG
PGVVQCDLVKKIRDNCPCCYGKQECPLYPTELAFALDASDGVPAPAFRNMRDAVLRLVGN
ITIAESNCPRGARVALTLYNNEVTTEIRFADALKRRALVQRIEGLQALQTRKQRSLETAM
NFLAQNTFKRVRSGFLMRKVAIFFVNGAVKEYPAISAAALRLYDTGIASVFLLNREDRAL
SRALQINNTALAQVVVLPSPGSAQYNSVIQKVMNCHVCFDFCSPDAMCDYIPPTSLRDRR
SFTSDVDIDMAFVMDSSETTYPATFDEMKHYVAHMVDQLEISSSPASSIHHARVAVVQQA
PYEFLRNSSGLPIHINLRLTDQNSARDIRTFLLEKTPQLEGGLALAAAIESTVEQVFEKA
PHQRDLKVLILMVTGPVAEDEERLVRVATEMKCKGYFLVVLGVGEKLRVADTRVLSRMVS
EPSDVFFKRLDGTSQFYDKYIQNFGRLLPKYLNIQNAFYMSPEVSKHCQWYQSDQPFKNP
FKASQEKHHKHHENHQEVHPRKHKESVELHLANVTSSSLSLRWAEADPKLMAYFEVAVTR
LHDHTLVLRKNVTGTELLVDGLDAGQTYHAVVTAHTTDGNTASSYKGIVTTKAAEHKVPH
HVSVLALTPPLDKPETANELAGPCSLDYDPGLPCKDYQAKWFFDRKNGICTQFWYGGCGG
NGNRFETEAQCLKLCVRSAPEPQQNMEQVKTEILPAPAALTGSDICQLAKEEGACAKFVL
KWHYDALSKSCSRFWYGGCGGNQNRFNTHEECEKACGKAAAASRGVIAAIRT
NT seq
9519 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcgtcggctgatgccgctgtgcgctctcgtctgcttcctgttcgcaggactg
ctgaccaaacttgatgctcaggaagattgcgcacaaggcctgccagctgatatatacttt
ctagtggactcatcatggagcatgggacaggagaactttgagtacgtaagacagtttctg
tacagagtggtaaaagctctgcaacaggggggcgggagcaggtttaagtttgccctggtg
cagtacagcggttcgcccaaaaccgagttccaactcaacacttaccagtcgttccgggag
gtccttgggcacatcgaggccatggtctaccggggcgggggaaccaggacggggctgggc
ctggacttcctcatccgggcccatctgaacgccgcctcgggcagccgagccggcgacggc
gtgacccaggtggtggtggtcctgacggatggacgttcccaggacgacgtggccgaacca
gcccaggtgctgcgtctggcgggcgtggaggtttttgcagtgggcgttcaggacgcggtg
gactgggagctcggcgagatggctagcgagccacgagacactcatgttttcagcgtagac
actttcacggccttggcgggcattatccaggacttagtggtggggttgtgtggtgccgtg
accctggctgggggcggggctcctgtagcgctgacagcccccatgtcagttgaagtcaga
cgattggctggagatgtgacagcacaagaatcagccgacctagttctcttaattgacgga
tctgaaaacattggagcggctaacttcccacgtgtgcgtgatttggctataagaatcata
cagggccttgatgtgggcagggacaaaatacgggtggccgtggttcagtacggcgccaac
cctgagattaagatctatctaaatagttatgaaaacaaagccgctgtcctggatgccgtg
aaggcccttaccttcatgggaggtgacgaggctaatctcggtgcggccttggaggaagtg
gcagagcacctgttgatccaggtggccgggggcagggcggaggagggggtgccccaggcc
ctggtgattatcagtgccggtccatccacggacgatactggcgtgggcgacagggcgctt
aagcagtccaacgttatcacatttggtgtggtggtgggtgcggaggccacagctgagttg
gagacggttaccacagataagagctttcttctgtcggccccagatttcagtgcagtggct
gtcatgggtgaccaactgctaccatacattaacggggtggcccaacgcacaattgtcatt
cagaatgagttcacagaagccttggaagttggaaatagggacatcattttcctcattgac
agtaccatgggttccacaattatcaacgccatacgcgagttcatcagaaggtttgtcgag
acaatgccaatcggaccgggcgaggtgcaagtgggcgtggtccagttcagcagcaccccc
cgatcggagatcgacctgaacgcctttggaaccaaggaggacctgttaggcgctcttggc
cgaatcaaaccaaaacccggccaggaggtgaacatcggagcagccttgaactttgtgaga
accaacatgctgcgggaagagaagggaagtcgtattcagcaggggattcctcagctggtg
ctgctgatgacaactaagaagtccagcgacagcgtggagcagccttccgaggaactgcag
cgcatgggagtcctgaccctggccgcaggctccaagaccgctgacgagcaggagctaaag
cgcattgcctttgccgagagcctggtgttcatgttaaaggacttccgccagctgctgcgc
cagcccaagctgatcgtctcgccgctctccactctgaccggggtggttgtgactgaggga
cccacagaaccagtggtcgagattacgacagtgcagactcagcggatggtgcgagacatc
gtcttcctcgttgatggctcaagttacactgagagcaacttccgttacgtgcaagaattc
atcgccgaagtcgtcaaccagctggatgttcggccagaccgggttcagatcggcctcatg
caattcgcaggaaaccccaagatcgagttttacctcaacaccttctccagcaaacaagac
gtgctgaacagtgtctcccaactcaggggggttggaggctccattctgaacacaggagct
gctatggattacgccctcgccaacatgttccaggcctccacagggtcccggaagagacag
ggtgttcaacaggtgttggttctggtcaccggtggcccatcccaggaccaggttaagagg
atagccgacaaagtggctctggcaggcgtactgaccttcacagtcagctccggccaggca
gacagcgctttaatgaagtcggttgcttttgttcctaacttggcttaccatgaaaggagc
tggactggactggcaaatgttgtggggcaaatcatgacccctctgatcaccgtggtgggt
gatactgatgtgactcagggagaagtcatagaggaagtcacaggcggagagagggatgtg
gctttcctgattgatggctctgataatgtaagagcagatttctcttacatccgggacttc
attctcaaagtcattgagcctcttgacattggaatggacagagtacggatttcagttgtc
caacaaagtgagaggccaacggctaacttctacctaaacacttatcagaataaagatgaa
gtaatgagagctgtaaattcacttactccggctggtggtcgaagtctcaacacgggggtt
gccttgaaattcatgaaggataccatattgtcagataaacatggcagccgtgcagctcag
aatgtaccccagttcatgattgttttgagtggcagcaaatcaaaggacagtgtcaaggag
tcagccgttgccttaaagactgatggagtggtaccgtttggtgtgggtgtcaaggatgcg
gaccgtaaacagattgaggccatttcacacaacccctcctttgccttcaacgtgaaggat
ttcagtgagctgagcaccatcccccaaaagctcaacagctatgtgagcctccccaaggag
cagctccaagaagtcctccttgaagccgagtctcagggtcccaagaaggatgtggtcttc
ctcattgatggctcagacaacgtaggaagagagttccccatcatccaggagttcatccgc
agagttgttgaaaaccttaatgtgggtgagaacaagattagaattggtgtggtgcagtat
ggtgactccccttcagcagatatctacctgaactcccatacgaccaaagagggcgtcatg
aatgctgtgaggtcgctgagacagcacggtgggaggcagcgtaacttgggccaggctgtg
gagtttgtcagtcgggacgtgctcacagctccacgtggaggcagaaagcaggagggtgtc
catcagtttgtgattgtcgtttctggaggaagttccactgatgatgtcagacaggcagca
accttgcttaagcagtccggggttctgcccttcagcattgggaccagagatgctagccaa
caggagctccagatgatctcctacgttcctaaatttgcttacaccgtggatgacttccct
ggtctatacactgtccaggaaaacttgatctccacgctgacagagttgtcagatgaagaa
attgccaggctccatccggtattcccaagttttgatgtgacaaccacagtagtaaccact
ggcggagacaagagggatgtggtattcctcattgacggaacaacagcagtacgcaacgag
ttccctgctatcagggatatgatcaacagggtagtgggaaagctggatgtgggtctggat
cgcgtcagggtgtcggtggtgcagtacagtgatgacgccaaagtggagttccttttgaat
gaattctcaacaaaagaagaagtccgccaggctgtgagcaggctgcggagcagaggtggg
aaccagctcaacacggggcgtgctcttgactgggtctccaagaacatataccagagatca
gcaggtagtcggattgaggatgctgtgccacagttcctgatcctagtcactggaggcaag
tcttcagatgatgtttctggtccggctaatcagctgaagaccaaccttgttgctcctctt
gccattggggcaaggaatgccgatcccaacgaactgaggcagatcgcactgaagccagag
cttacctacactatcagcaacttcgggcaacttccaagtgttgagcagcaactcattact
tcagtcaacaccatgaccaccgctgacatctctactagttttgatccctcaaagggtgtc
cgaaacctaaacatggggagaaaggacatcattttcctcgttgatggatcagacaccaca
ggctcttccggcatcgcccacatccgtgacttcatcctgaacatagttcagcagctcaat
gttcagccagaccacgtgcgagtatctgttgtccaatactcagacaaggtcaagactgag
ttttccctcaactcccacaacaacaagccagatgtactgtcagctatcaagagacttcgt
cagatgggcggccggtcctcaaacttggcagaagccatcgagcatgtgatccggaatgag
ctgaaagcctcagcaggtgtccgtctggccgacgcctcccagcatctcgtggttctcact
ggcggacgctccacgtccgacctgtcagtttatgggcctctgctgaaggggtctcgagtc
aactgcattggtatcggcgctggggccgctgacgccaggcagctgaaacaaatcgccacc
agctcagaagatgttctccaggtgccaacgttcccgggcttgcctgtcatcagagagaag
ttcatcgcccgtcttaatgggactatcccagaggagccccccacagattatgaggacccc
aatctccccaaagccaaggcggctgatattgtgtttttggtcgatggctccatcaatctg
ggcaaggataacttcaaggaggttatggatttcatcctgaatctcatcgacctcttcttc
accgagagggacaagcttcagattggcctggcgcactactccacggacatgaccgacgtc
ttcttcctcaacacttacaaggacaaggatgacatcatcagtgccatctcccggaccgag
tacaagggtgggcggaagatcaacacaggtgcagccattcgccacgtgcagcagaaccac
ttcatcaaggagaaaggaagcaggaaggacgaaggcatccctcagatcctgatgatcgtc
actggaggacgttcgtctgacgacggcaagtcggcagctctcgctctgaaagctaccggc
gtgcgaatctacgcagttggagtggggaacatcgaggatgagctgatcgacctgggcagc
gaggccaccacggtggcgagggcaagcaccttcctggaactatcggagctcaacgagcag
atcttggaaacgctggatgatgaggtgaaaggtgtgaaactctgcacgggtgtgccggac
tcagtcaaaagctgcaatgtggaggtgttggtgggctttgacgtgtctgcccagaacatt
tttgccgcccagaccaacctccagaccaagatgggagccatcctccagagaatctccaag
atggcgtctatcagctgctcctcgggccagatcccctctgtccatgtggggatgctggcc
atggactctgcctccgagccagtcatgctggaattcaccgataacgcagatgagctgttc
gaagcgttcaaggccttgagaaactccggcccttaccttctcaatggcaagactatcact
gcttacaacacaaggttcaaaagcagaccggctgacaccactaaggttgtgattcatctg
actgatggattggatggccaatactctgagatgaagagacgagttgaggaacttcggctt
tctggtgtgagcagcttcatcctggtgggtcttgagcgcgtgcccaggtttgaagaggca
gtgctgctggagttcggccgtggtttccggtacactcgccccctgcgtgtcaacatcatg
gatctggactatgagctgatggaggaactggacaatattgctgagagggagtgctgcgca
gtgccatgcaagtgcacaggcaccagaggagatcgaggtggagttggcttaccaggacct
aagggcggtccaggtgcagtgggatacccagggcatcctggagatgagggtggacctgga
gacagaggtcctcctggtgtgaatggaactcagggtttccagggctgtccaggtcagaga
ggcgtcaagggttctcgtggatactccggtgaaaagggagattttggagagattggcctg
gatggtattaatggagaagagggtacaagtggaattgttgggccccctggagatagaggg
aacccagggagaaggggtcccaaaggccttaaaggaaaggcgggagatatagggggtact
ggaatcaggggagatcccggtgcaacggggctggataacaacgagccgggacctaaaggg
gacctaggcgatgctggtccagtgggagaggcaggacaggatggcaccaggggaggcgca
ggcgaaccaggaaggaggggtgctgacggtaggagaggtgctcctggaccagccggacct
ttgggcaagcctggagctgacgggctccagggagagccagggatcggaggatccagggga
ccagcaggacccacaagtacaccaggaatccgaggcgaggatgggaacccaggacccagg
ggcccaggaggagcccaaggacccggaggagacaagggacgacggggtactgttggtcgt
aagggagagccgggagactccggacccaaaggcattgtgggacctctggggcctcgtggg
gaacctggtgaggatggtcgggatggctttggaatcccgggacccaagggcaggaggggt
gatgagggcttcccagggttcccaggaccaaagggtgcggcaggagacgcagggacccct
ggaggacctggacgccatggcaaccgcggccagacgggtgtatcaggagatattggttca
ccgggccagaagggagatgtcggataccctggttcctacggtcagaagggaccgagagga
cctggtgttgtgcaatgcgacctggtcaagaaaatcagagataactgcccctgctgctac
ggcaagcaagagtgtcctctctatcccactgagctggccttcgccctggacgcctccgat
ggcgtgccagccccggccttcagaaacatgcgagacgctgtcctccggctggtcggcaac
atcaccattgccgagagcaactgtccccgcggcgcgcgcgtggcgctgaccctctacaac
aatgaggtgaccaccgagatcaggttcgccgacgctctgaagcgccgcgccctcgtgcag
cgcatcgaaggactgcaggccctgcagacacgcaagcagcgcagcctggagacggccatg
aacttcctggcccagaacaccttcaagagggtgcggagcggcttcctgatgagaaaggtg
gccatcttctttgtcaacggggcagtgaaagaatatccggccatcagcgccgcggcactc
aggctctacgacaccggcatcgcgtccgtgttcctgctcaaccgtgaggatcgcgcgctc
tccagagctctgcagatcaacaacacagccctggctcaggtggtggttctgcccagtcct
ggaagtgcacagtacaactctgtcatccagaaggttatgaactgccacgtgtgctttgac
ttctgctccccggatgcgatgtgcgattacatccctccaacgtccctcagagaccggcgc
tctttcacctcagatgtggacatcgacatggccttcgtcatggacagctccgagaccacc
taccccgccacctttgacgagatgaagcactacgtggcacacatggtggaccagctagag
atctcctccagcccagcctcgtccatccaccacgccagggtggctgtggtgcagcaggcc
ccgtacgagttcctccgcaacagcagcggcctgcccatccacatcaacctgcggctgacg
gaccagaactcggcccgagacatccgtaccttcctgctggagaagacccctcagctggag
ggaggcctggccctggcggcagccatcgagagtacggtggagcaggtgttcgagaaggct
cctcaccagcgagacctgaaggtgctgatcctgatggtgaccggcccggtggccgaggac
gaggagaggctggtgcgggtcgccacggagatgaagtgtaaggggtacttcctggtggtc
ctgggcgtgggtgagaagcttcgggtcgcggacacgcgagtcctgtcccgcatggttagc
gagccgtccgacgtgttcttcaagaggctggatggcacctcacagttctacgacaaatac
atccagaactttggtcgcctgctgcccaagtatctcaacattcagaatgctttctacatg
tcccccgaagtctccaaacactgccaatggtatcagagtgaccagcctttcaaaaaccct
ttcaaagcttctcaggagaaacatcacaaacaccatgaaaatcaccaggaggtccatcca
aggaaacacaaagaatcggtcgagctccacctggccaacgtgacctccagcagcctgagt
ctgcgctgggccgaggccgaccccaagctcatggcctacttcgaggtggcagtgacacgc
ctccacgaccacaccctggtgctgaggaagaacgtcacaggcaccgagctgctggtggac
ggcctggacgctggacagacctaccatgctgtggtcaccgcccacaccaccgacggcaac
accgcctccagctacaagggcatcgtcaccacaaaagcagccgagcacaaagtcccccac
cacgtctctgttcttgcgttgacaccccccctagacaaaccagagacagctaacgagctc
gcaggcccatgttcacttgactatgatcccggactgccgtgcaaagactatcaggctaag
tggttctttgacagaaagaacgggatctgtactcagttctggtacgggggttgtggagga
aatggaaataggttcgagaccgaggcccagtgcctgaagctctgcgtgaggtcagcacca
gaacctcagcagaacatggagcaagtaaagactgagatccttccagctcccgcggcccta
acaggaagtgacatctgccagctggccaaggaggagggagcctgcgccaaattcgtcctc
aagtggcactatgacgccctgagcaagagctgctctcgcttctggtacggaggctgcgga
gggaaccagaaccgcttcaacacacacgaggaatgtgagaaggcctgtggaaaagcagca
gctgccagccgaggagtcatcgccgctataagaacatag
DBGET
integrated database retrieval system
