Osmerus eperlanus (European smelt): 134017189
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Entry
134017189 CDS
T10927
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oep03000
]
134017189 (sox1a)
Transcription factors [BR:
oep03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
134017189 (sox1a)
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
134017189
NCBI-ProteinID:
XP_062312559
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All DBs
Position
3:complement(3883163..3904288)
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AA seq
319 aa
AA seq
DB search
MYSMMMETDLHSPGPQTNTTTGQTGPNSGSKANQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGAGGGGGVGLGVGMGSSGIGQRLESPGGHGGSASSGYAHMNGWANGAYSGQ
VAAAAAAAAMMQEAQLAYNHHPGSGAHHHHSHHHHPHNPQPMHRYDMTALQYSPISNSQS
YMSASPSGYGGITYTQHPSSGVSSSAMGTLGSLVKSEPSQQVPCRMPQTQMTVTGHIEPW
GVDHDDCQGMLTMDLHGNE
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggaaaccgacctccactcccctggaccccaaacgaacacgacc
acgggtcaaacggggccaaacagtgggtctaaagcgaaccaggacagagtgaaaagaccg
atgaacgcgttcatggtgtggtcccgtgggcagcggaggaagatggcacaggaaaatccc
aaaatgcacaactccgagatcagcaaacggctgggtgccgagtggaaggtgatgtccgag
gccgaaaaacgtccgtttatcgatgaggcgaaaaggttgcgagctatgcatatgaaggag
cacccggattacaagtaccggccacgacggaagaccaagacgctgcttaaaaaggacaaa
tactccctggccggtgggctgctctctggggcaggagggggtggtggagtgggtcttggg
gtcggaatgggttcctccgggatcggtcagaggcttgagagcccgggggggcacggaggc
tcagccagctcgggctacgcgcacatgaacggctgggcgaacggtgcgtactcaggacag
gtggctgcggcggcagcggctgcggcgatgatgcaggaggctcaactagcctacaaccat
cacccagggagcggagcacaccaccaccactcacaccaccaccacccacataacccgcag
cccatgcaccgctacgacatgactgcactgcaatacagccctatctcgaactctcaaagc
tacatgagcgcctctccgtccggctacggcgggatcacctacacgcagcacccgagttct
ggggtctcttcctccgccatgggaacgttagggtcgctggtgaagtcagagccgagccaa
caagtaccctgcaggatgccgcagacccaaatgactgtgacgggacacattgaaccttgg
ggtgtcgatcacgacgactgccaggggatgctgacgatggatctccacggtaacgagtga
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