Osmerus eperlanus (European smelt): 134017484 Help Entry 134017484         CDS       T10927                                  Symbol col4a1 Name (RefSeq) collagen alpha-1(IV) chain   KO K06237   collagen type IV alpha Organism oep  Osmerus eperlanus (European smelt) Pathway oep04382   Cornified envelope formation oep04510   Focal adhesion oep04512   ECM-receptor interaction oep04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:oep00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     134017484 (col4a1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     134017484 (col4a1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     134017484 (col4a1)  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     134017484 (col4a1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:oep04147]     134017484 (col4a1)    00536 Glycosaminoglycan binding proteins [BR:oep00536]     134017484 (col4a1) Exosome [BR:oep04147]  Exosomal proteins   Exosomal proteins of other cancer cells    134017484 (col4a1) Glycosaminoglycan binding proteins [BR:oep00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    134017484 (col4a1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  134017484 NCBI-ProteinID:  XP_062313117 LinkDB All DBs Position 3:10143997..10175157 Genome browser AA seq 1637 aa AA seqDB search MMLPCGTLFLLAALYSNFDLSEAKGCSGSSCGDCDCSGVKGGKGERGFPGLQGNMGFPGM QGHEGPPGPMGPKGDYGESGSPGQKGSRGPPGLAGFPGNAGLPGIPGQDGPPGSQGIPGC NGTKGERGTDGSPGLHGLQGPPGLPGLQGMKGEPGIVMGIKGDIGFPGRPGQQGLQGPVG PLGPKGPPGDEGPKGFPGPPGPPGEKGDRLSFQSEKGDKGDKGLQGPPGPPGPPGGPGEQ TGPSITHYIPGDRGSQGEKGDKGACVPHVTGVKGEPGPPGPRGKPGKDGDNGFTGEKGFS GTPGYNGETGEKGERGPPGYGSPGPQGPPGFPGLQGERGFPGIQGDTGPPGGHIEGPPGE RGQKGDVGLKGNPGLDGESLRGAPGQDGLAGPPGPPGLVGTDEPCPGIQKGGPGPPGPQG LRGELGQKGDSGDTCVQCESFGPPGSTGPQGPKGPQGYPGPAGSKGDKGQSGPSGPPGTP GSVGTPGLMGAPGSVGEPGDIYVAPGLKGAKGLPGTAGTSGLPGVDGLPGQDGKPGIPGP KGDPAREGIKGERGRDGDSGPMGRTGERGPPGQPGFGRTGEAGDKGTTGQPGRPGAPGQP GVKGEPGKGVSAPGPQGTPGARGETGRPGLQGNSGPQGDPGMPGFPGPKGDPGQPGIGFP GLPGPKGYSGTPGAPGVPGESGRQGNDGLSGRPGGPGPKGEPGRGLPGPKGSDGPPGVTG FPGDKGKVGLPGIPGTEGASGPPGPQGIKGDPGPPGRHGVSGQPGPPGAGDPGAPGPMGP PGKTGPFGRDGVKGDKGFPGSPGQDMPGFPGDKGDQGFPGPQGSKGLAGRPGASGRDGLP GDPGPKGEMGVIGTPGTPGYQGSLGSPGSPGLRGDPGLTGPRGDFGEQGPKGERGEQGLQ GPPGNMTEVDMEHMKGEKGDIGVTGNPGKTGQKGYTGQPGSPGMPGKDGEPGQPGQAGVK GDLGFPGEPGGEGKPGQKGSSGDMGLPGSTGPKGAKGIVGTPGHTGFRGSDGDKGDQGVP GKPGVGIPGPPGEKGFTGLPGTSGNPGDKGLKGSMGVPGMPGTSGSKGDTGSIGYPGQPG QPGEKGVVGLPGSSGEPGRPGQPGDPGLQGPPGPVGEKGESGVDGIPGSSGERGDPGLPG RGFPGTNGQTGTKGNKGSHGVPGTPGLSGIPGTKGDKGIPGFHGPQGQPGERGLPGSSME GPKGDKGVTGQPGEPGSTGAPGPAGIPGREGSKGDKGESGPAGVQGETGLKGDRGNPGLS GQPGLPGVDGLKGELGVQGAPGFPGTKGEIGFVGFKGELGDQGFPGVKGIDGPPGPPGPH IFIKGDLGFPGTQGPSGPEGPQGFPGLKGQQGVTGIQGIKGEEGHPGYNGHPGAKGEPGL TGPLGPRGHPGPPGPDGVPGQVGPPGPSSMDHGFLVTRHSQSVDVPDCPEGTSLIYDGYS LLSVQGNTRTHGQDLGTAGSCLRKFSPMPFLFCDINNVCNFASRNDYSYWLTSPEPMPMS MAPITGHSIKPFISRCSVCEAPAMVLAVHSQTIMIPACPSGWDSLWIGYSYVMNTGSGAA SFGQALASPGSCLEEFRSAPFIECHGKGTCNYYANSYTFWLATIEDEDMFTKPIPATLKA GNLRTHISRCQVCMKRT NT seq 4914 nt NT seq  +upstreamnt  +downstreamnt atgatgctgccctgtggaactttgtttctacttgcggctctctactctaacttcgacctt tctgaggctaagggatgctcaggctcatcctgtggggattgtgactgcagtggtgtaaaa ggaggaaagggtgagcggggattccctggtctccaaggcaacatgggttttccagggatg cagggccatgaggggccccctgggccaatgggccccaagggagactatggtgagtctggg tctcctggacagaaaggaagccgtggccctcctggtctagcaggtttcccaggaaacgcc ggccttccgggtattcctggacaagatggccctccaggatcacaaggtatcccagggtgc aatgggaccaagggagaacgaggaactgatgggagtcctggcttacatggcctgcagggt ccacctggtctgcctggactccaaggaatgaagggagaacctgggattgttatgggaata aaaggagacatcggattccctggaagacctggacaacaaggattacaaggaccagttggc cctctgggccccaaggggcccccaggagatgaaggacccaaaggtttccccggccccccc ggtcctccaggagagaagggtgaccgactgtcctttcagagtgagaaaggagacaagggt gataaaggactccaggggccacctggcccaccgggcccccctggtgggccaggggaacaa acaggcccttccatcacacactacatcccaggagacagaggatcccaaggagaaaaaggc gacaaaggagcctgcgtgccccatgtgactggtgtgaagggggagcccggaccacctggg cccaggggcaaacccggaaaggatggggacaatggatttacgggagagaaaggcttctcc gggactcctggatacaacggagagacgggtgaaaagggagagaggggacctccaggatat ggttcacctggcccccaagggccccctggttttcctggattacaaggagagagaggtttc cctggtatccaaggcgatactggaccccctggaggacacatagaaggccctcctggtgag agaggccaaaaaggagatgttggcctcaagggcaatccaggactggatggggagtctctc cggggggcccctggacaggacggattggctggacctcccggcccccctggactagtgggt acagatgaaccatgtccaggaatacagaagggaggccctggccctcctggacctcagggt cttagaggggagttgggacagaaaggtgacagtggggacacgtgtgtacagtgtgaatcc ttcggccccccaggatcaaccggcccccaggggcccaaaggaccacaaggttacccaggc ccagcaggcagcaagggagacaagggtcagtctggtccatctggacctccaggaacaccc ggtagtgtgggtactccaggtttgatgggggcccctgggtccgtcggtgagccaggggac atctacgtggctcctgggctcaagggagccaaggggctgcctggcacagctggcacatcc ggattaccaggggtggacggtctgccggggcaggatggcaaaccaggcattccggggccc aaaggagaccccgccagagagggcattaagggggaacgcggtcgggacggagactcaggt cccatggggcgcacaggggagagaggccctccaggacagccagggttcgggcgaactggc gaggctggagataagggcaccacgggtcagccaggcagaccaggagcccctggacaacca ggtgtgaagggagagccaggtaaaggagtgagcgcacctggaccacagggaactcctgga gccagaggagagacaggtcgacctggactacaaggtaacagcgggccccagggtgaccct gggatgccgggattcccaggaccgaagggagaccccggtcaacctggcataggatttcct ggactacctggacccaaaggatactctggaacccctggagcccctggagtcccgggagag tcaggtagacaggggaacgacggcctctctggacggcctggagggccaggtccaaaggga gagcctggcaggggtctgccagggcccaagggctcagacggccccccaggggtgacaggc tttcctggggacaagggcaaagtggggctgcctggcatcccaggaacggagggagcctca ggaccgcccggacctcaaggaataaaaggtgacccaggaccaccaggacgtcacggtgtg tcaggccagccaggacctcctggagctggggaccctggagcccccgggcccatgggaccc cctggaaaaacaggaccctttggtcgggatggtgtgaagggagacaagggattccctggt tcccctggccaagacatgcctggttttccaggggacaagggagaccaaggcttcccaggc ccccagggatctaagggcctggccggacgaccgggcgcctctggtagagatggcctacca ggagacccaggtcccaagggagagatgggtgtcatagggactccaggaaccccaggttac caggggtctctcggctcaccaggttctcctggcctcagaggtgaccctggactaacaggg cccaggggagattttggtgagcaaggccccaagggagagaggggggaacaaggactgcag gggcccccggggaacatgactgaagtggacatggaacacatgaagggagagaagggagat atcggagtgacaggtaacccaggtaagacgggacagaagggttacacggggcaacctggc tcacctggaatgccggggaaggatggcgagcctggtcagcctggacaagcgggtgtgaag ggagacttgggttttcctggagagcctggcggtgaaggcaaacctggacagaaaggctct tctggagacatgggactaccaggttcgactggtccaaagggtgccaaggggattgtgggc acacctgggcacacaggcttcaggggctctgacggggacaaaggagaccagggtgtgcct gggaagccaggggtgggcatacctggaccacctggagagaagggttttactggcttgcct ggtacctcgggtaacccaggagataagggtctgaagggttctatgggggttccaggcatg ccagggacatcaggctccaagggggacacgggctccattggatacccaggtcagccaggt cagccaggtgagaaaggagttgtcgggctgccagggtcatctggagagccagggcgcccg ggacaaccaggtgaccctggcctgcagggccctcctgggcctgtgggggaaaagggggaa tcgggcgtggacggcatccctggatcctcaggagagaggggtgacccagggttacctggc aggggcttccctggaactaatggacagaccggcaccaaaggtaataagggtagtcatggg gtcccgggtactccaggtctctcaggtattccagggacaaagggggacaagggcatacca ggcttccacggcccccagggccagccaggagagagaggcctgccaggatcctccatggag gggcccaagggggacaaaggagtgacaggacagcctggagagccaggatccacaggggcc cccgggccagcaggtatcccaggtagagagggctccaagggggacaagggagagagtggc ccagctggcgtgcagggggagacgggattaaaaggagaccgcggaaacccgggactttct ggtcaacctggccttccaggtgttgatgggctgaagggagagcttggtgtgcagggtgcg cctgggttccctgggacgaagggagagattggatttgttgggtttaaaggagagctggga gaccaaggattccctggggtcaaaggtattgacggcccacctggcccccctggcccccac atcttcattaaaggagaccttggcttccctggaacacaggggcccagtggtcctgagggg ccccaaggcttccctggcctgaaaggacagcaaggcgtgactggtattcagggtattaag ggagaagaggggcatcctggctacaacggtcatcctggagccaaaggagaacctggcctg actggtccattgggacccagaggacaccctggaccccctgggcctgatggcgtacctgga caggtaggcccacctgggccctcctccatggaccacggttttcttgtcaccaggcacagc caatcggtggatgttccagactgtcctgagggaacgtccttgatctatgatggctactcc ctcctctctgtccaggggaatacgcgcacacatgggcaggaccttggcacggccgggagc tgtctgaggaagttcagtcccatgccattcctgttctgtgacatcaacaacgtttgtaac tttgcctcccgcaacgactactcctattggctcacgtcacctgagcccatgcccatgagc atggcccctatcactggacacagcatcaaacccttcatcagcaggtgttccgtgtgtgag gctcctgccatggttctagccgtgcacagccagaccatcatgatcccagcatgcccctct ggctgggactcgctgtggattggatactcctacgtcatgaacactggttctggtgcggcg agttttggccaggccctggcctcccccggctcctgtctggaggagttccgcagcgccccc ttcatcgagtgccacggaaagggcacctgcaactactacgctaactcctacaccttctgg ctcgccacaatcgaggatgaggacatgtttacgaaaccgatcccagccacgcttaaggca gggaacctacgaacacacatcagtcgctgtcaagtctgcatgaagaggacatag

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