Osmerus eperlanus (European smelt): 134017655
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Entry
134017655 CDS
T10927
Symbol
lmo7a
Name
(RefSeq) LIM domain only protein 7 isoform X1
KO
K06084
F-box protein 20
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
134017655 (lmo7a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oep04121
]
134017655 (lmo7a)
Ubiquitin system [BR:
oep04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
134017655 (lmo7a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
PDZ_6
PDZ
PDZ_2
Motif
Other DBs
NCBI-GeneID:
134017655
NCBI-ProteinID:
XP_062313547
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All DBs
Position
3:18075768..18128239
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AA seq
1457 aa
AA seq
DB search
MMEWREQSAVSCEDAFSEAQRWIEAVTKKTFGSNNFRSALENGVLLCDLVNRIKPSIIKR
VNRLSTPIAGLDNLNVFLRACGKLGLKEAQLFHPGDLQDLSSRVTIKRQETSRRLKNVLI
TLYWLGRTAQNDPFYHGPYLNLKAFEGLLGIALSKALEDSVGQSGGSSSVRDSGFGDGWY
CEREDLFYLRGGGRQHRRENSLDSLDSEGSRPPSISSDTTLKDGSEGCFSDAEVDSLFKM
ADSKDPLHYRRSLVVTPKTATQFNQFLPTKDKFSGYVPAPLRKKRAERQEDNRRSWVGPQ
FTEEDGTFTRALRKPDASDGSKSMSDISVDPASLRQVRYEELQKIREQVKESEDQWQDDL
TKWKNRRRSVNSDIVKKKEEREEVEQFTLTGSSSRRSKTFREMQEERENRDTKSSLSNRL
SSLTSLDQDVFEEPAPAPRTRTLPTRSYTVDSPYAAEDRPTARSVPPLREDPPSARLEPN
RAILPPAVHKGVTGDLPTASSRSSIFKPSNPPATMEISCNPVNTAEDTSAPAPSLLIKAP
ESRLPWASRQAKETPSFGPLDEQPQPGYSLPPGVSRVSASLPRSYQRSDSARLTSVVTAR
PFGTQSTRITSLPRAFTMDESLRRVNGEPETASKPPPSIPVLGRYGQAMTFEHEARSSSA
QSSNEEEEEEEEEEERSGTPTPSVSPVVPQIKNDPSGPQTKAVSPTPVPVSPTSPKDTNQ
ESFCDMRISLNQKPNSSTDFGFHADWDSTGVHITSMQTGSPAEQCQLQLGDEVLAVSGHK
VSDMSYPEWKGSLEDALQQGSLVLDLRRHGKNHWDRDHPSLPFKSHKIINLTSMDHPTLV
GGPDKPTVNTTSLDFTSSTSTQNTKEVPSHPIIDMASNGVNGGFRDKPVTLRNKESEPIS
LKNLKRRSEFFEQGGSESAISDLAVPSIAPSSSRWSWDPEEERRRQEKWQREQEVLLQEK
YKRDQEKLEEEWRRAQQDAVNQGSTHQQEMSLEVENNRSISPHSPLSPLSQPTPPWQEQE
ESQAQALEEERSRLEEQERRRQEEERRKREEEERDLERLQEERKRLEQEEEKERRRREEE
ELRWQRKRQEEREEERRRQEEQQRKDRERDQENQRGGDSYGYAQVQPELSMTDRVKSKST
PHLDDVDHADSRGRSGRPGGMAQRLLEEELRRQQDRRAQGQRAASQLELERRDILNAMRY
REPERVTSSGLAEASWGKKGDSLSQSEAERQQILREMKKKTQLLTDNSWIRQRSTSTTTS
KEPIDLAGPIRRGDSLDNLDAPRSSWRSSWTPGSTSSIPNYSRPHSAMSASGGGAGAGGW
ARPGSATFPSSYSMSSLRAGGGNPSSSWSQRSSSPTSPSPTTSPEPPAEHHLPSQQQRSR
SVSGKKICTLCDSPLGKGAAMIIESLGLCYHLGCFKCIDCLCDLGGSEAGAEVRIRNKQL
YCNSCYVRFKTGQPTSM
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atgatggagtggcgcgagcaatctgctgtcagctgtgaagatgctttctctgaagcgcag
agatggattgaggcggtaaccaagaaaacattcgggagcaacaacttccgatctgcgctg
gagaatggagtgctgttgtgtgatctcgtcaacaggatcaagccaagtatcatcaagagg
gtgaacaggctctccacacccattgctggactggacaacctgaatgtcttcctgagggct
tgcgggaagctgggactaaaggaagcgcaactttttcaccccggagacctccaagacctg
tccagcagagtcactatcaaacgtcaagagaccagcaggagactgaaaaatgtgttgatc
accctgtactggcttggcaggacagcacaaaacgaccctttctatcatggaccttaccta
aacctcaaggcttttgagggattacttggcatagcactttcaaaggcactcgaggactct
gtgggccagagcggtggcagcagcagcgtgagagacagtggtttcggagacggctggtac
tgcgagagagaggacctgttctacctgagaggaggaggacggcaacacaggagggagaac
tccctggacagtctcgactctgagggctcgcgaccacccagcatctcatctgacaccact
ctgaaagacggcagcgagggttgtttcagtgacgccgaagtagattccctcttcaagatg
gccgacagcaaggaccccctccattaccgccgctcgctggtggtcacgcccaagacagcc
acccagttcaaccagttcctgcctaccaaggacaagttctcgggctacgtccccgccccg
ctgcgtaagaaacgggccgagcgccaggaagacaaccgcaggagctgggtgggcccccag
tttacagaggaggacggcaccttcaccagagctctccgtaagcccgatgctagtgacggg
agtaaatctatgagtgacatatcagtggacccagccagtctaagacaagtgcgctacgag
gagctgcagaaaattcgtgagcaggtgaaggagagtgaagaccagtggcaggatgacctc
accaaatggaagaaccgccggcgtagcgtgaactctgacattgtgaagaagaaggaggag
agagaggaggtcgagcagttcaccctgactggaagcagcagcaggaggtccaagaccttc
agagagatgcaggaggagagagagaaccgggacaccaagagttctctcagcaatcgtctc
agctccctgacctctctggaccaggacgtgtttgaggagccggcccctgctcctcggacc
cgtaccctccccaccaggagctacaccgtcgacagcccgtacgcagccgaggaccgcccc
actgctcgctccgtgccccccctgagggaggaccccccttccgccaggctggagcccaac
agggccatcttgccccccgctgtgcacaagggggttacgggggaccttcctaccgccagc
agccgtagctccatctttaaaccttccaaccccccagccactatggagattagctgcaac
ccagtcaacacagcggaggacacctctgccccagcccccagccttctgatcaaagcaccc
gagtccaggctcccctgggcgagcaggcaggccaaggagaccccctcttttggccctctg
gatgagcagccccagcctggctacagcctgcctcccggggtgtctcgggtttccgcctct
ctccccaggagttaccagagatcggatagcgcccgcctcacctcagtcgtcacggcgcgg
cccttcgggacacagtccacccggatcacttccctgccccgagccttcaccatggacgag
tctctgaggcgcgtgaacggcgagccggagaccgccagcaagcctccgccctccatccct
gtcctcggccgctacggccaagccatgacctttgagcacgaggcccgctccagctcagcc
cagagcagcaacgaggaggaggaggaagaggaggaggaggaggagaggagtgggaccccc
acaccgagtgtttcccctgtggttccccagatcaagaatgacccctccggcccccagacc
aaggctgtgtctcccactccagtcccagtcagccccacatccccaaaggacaccaaccag
gagagtttctgcgacatgcgcatcagtctgaaccagaagcccaacagcagcacagacttt
ggtttccatgccgactgggactccaccggagtccacatcacatccatgcagacaggcagc
ccagcggagcagtgccagctgcagttgggcgatgaggtgctggcggtgagcggccacaag
gtgtcagacatgagctaccctgagtggaagggcagcctggaggacgccctgcagcagggc
agcctggtgttggacctacgacgccacggcaagaaccactgggacagagaccatccttcc
ctgccgtttaaaagccataagatcatcaatctgaccagtatggatcatccaacacttgta
ggtggccccgacaaacccaccgtcaacaccaccagtctggacttcacctcctccacatcc
acccagaacaccaaggaggtccccagccacccaatcattgacatggcctccaacggagtt
aatggcggtttccgtgacaaaccagtgaccctgaggaacaaagagtcagaacccatttct
ttgaaaaacttaaaacggagatcagagttttttgaacaaggaggatccgagtctgcaata
tccgatctggctgttccctccatcgccccgtcctccagccgctggtcctgggacccagag
gaggagcgcaggaggcaggagaagtggcagagggaacaggaggtcctcctgcaggagaag
tataagcgagaccaggagaagctggaagaggaatggcgtagggcccagcaagatgctgtg
aatcagggcagcacacaccagcaggagatgagtctggaggtggagaacaacaggagcatc
agccctcactctcccctctcccccctcagccagccgactcccccctggcaggagcaggag
gagtcacaggctcaggctctggaggaggagaggagccggctggaggagcaggagcggagg
aggcaggaggaggagaggaggaagagggaggaggaggagagagacctggagcgcctgcag
gaggaaaggaagagactagaacaggaggaggagaaggagaggaggaggagggaggaggag
gagctgaggtggcagaggaagagacaggaggagagggaggaggagaggaggcgtcaggag
gaacagcagcgtaaagacagggagagggaccaggagaaccagaggggaggtgactcctat
ggctatgcccaggtccagcctgagctgtccatgactgacagggtgaagtccaaatctaca
ccccacctggacgatgtggaccatgccgattcgagaggccgctccggccgtccggggggc
atggcccagaggctgctggaggaggagctgagacgccagcaggacaggagggcccagggc
cagagggccgcgtcccagctcgagctggagaggagggacatcctcaacgccatgagatac
agggagccagagagagtgaccagcagtgggctggctgaggcctcatgggggaagaaaggg
gacagcctgtctcagtcggaggccgagcgacagcagatcctgcgggagatgaaaaagaag
acccagctcctgactgacaacagctggatccgccagagatccaccagcaccaccaccagc
aaggagcctattgacctggctggccccattcgcagaggcgattccctggacaacttggac
gcgccccgctcctcctggcgctcctcatggaccccaggaagcacctcctccatccccaac
tacagccggccccactccgccatgtctgccagcggcggaggagcaggggctgggggctgg
gctcgccccgggtcagccacctttccctcttcctactccatgagctccctgcgagcgggc
ggagggaacccctcgtcctcctggtcccagcgctcctcctcccccacctccccctccccc
accacgtctcccgagcccccggctgagcatcacctgccctcccagcagcaacgcagcagg
tcagtgagtggcaagaaaatctgtacgttgtgtgactcgccgctgggcaagggagcagcc
atgatcatcgagtccctggggctctgttatcatttgggctgctttaagtgtattgactgt
ctgtgcgacctgggaggatcagaagcaggggcagaggtcagaatacgcaacaaacaactc
tactgtaactcctgctatgtgcgcttcaaaactggacagcccacctccatgtga
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