Osmerus eperlanus (European smelt): 134017879
Help
Entry
134017879 CDS
T10927
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04622
RIG-I-like receptor signaling pathway
oep05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
134017879 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
134017879 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
oep04054
]
134017879 (ifih1)
Enzymes [BR:
oep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134017879 (ifih1)
Pattern recognition receptors [BR:
oep04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
134017879 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
CARD_2
DEAD
ResIII
Helicase_C
CARD
SWI2_SNF2
AAA_22
C1_4
DUF3638
Motif
Other DBs
NCBI-GeneID:
134017879
NCBI-ProteinID:
XP_062313974
LinkDB
All DBs
Position
3:22959681..22972168
Genome browser
AA seq
993 aa
AA seq
DB search
MGTKDDDVWKNLIDVLRPRLLKLIQVEPVLDYLDFIDVEQKELIKNKAKTESNIRAVDLL
IETLIKNQYPAGWFRSFVVALSEAGCQHAASYVEGRPPSPSSEAENDYCVRLIQVLLPTL
LEMKTNDVSRRCFELDILNQEDLEVISGKTPKEGARELLRRVVRCPPGWFSTFLQALRDT
EHIPLYRELTGGNPGDEGNEPGEDGEPGSLVSADGAPGEAATQGQAAQRPGASEDETLDS
SDISGMSMDESLDTTDLYQEQEEKSSDSLDVSLSDGSDAASSAGSPKKADIILRDYQMEV
ARPALEGKNIIVCLPTGSGKTRVAVYITKQHLDGRRSEGLPGKVVVLVNKVPLVEQHYST
EFWKFLKHQYKVEKVSGDSQLKISFTQIVQKNDIIICTAQILENYLERANDGDDDGIQLS
DLTLIVIDECHHTQKGAVYNKIMIRYLKQKKKNASLKKLAKKTVPIPQILGLTASPGVGG
AKKMAKAEEHILRICANLDASEILTKNESLGLNKKEPHKRIATAEERNEDPFGDVIKGIM
NDIHGHGVLSPSCDLGTQNYEQWVVLMEQNAAKEENQQVRVCAEHLRRYNEALHLSNTIR
MKDAFSFLHKFYKEEKKKKMAPEEDTPIKITETEMFLFDLFKEKKAQLQELTKHPEYENN
ILSQLRTTVLQEFTSRMEARGIIFTKTRHSAIALSQWVQDNPKFAEVGVKACYVIGAGDQ
SEVKPMTLAEQRDALKKFRNGEVNLLIATTVAEEGLDIAECNFVIRYALVTNEIAMIQAR
GRGRAEDSSYILVEEQGSGVAEREHVNEYRESMMSKAIEKVKKLDPAAYEKRILEYQLQA
IMEDRVKKTKKNQKAMMMESPSKVMFNCKRCSKTVCSGEDIQIIESMHRVNVSAQFGELF
IKRENTSLRERMLDYETNLVIACKDCGQEWGSMMLFRGIDCPCLHIKHFVVTFDGRNKTY
TKWSELTVKFPAFDYAEHASLVAHSSEEDEDSM
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgggcactaaggatgatgacgtttggaaaaatcttatcgatgtcctcagacccaggttg
ctcaaacttatccaggttgagcctgttctggattacctagacttcatagacgtagagcaa
aaagaactaatcaaaaacaaagcaaagacagagagcaacatccgggctgttgacctactc
attgaaacgctcatcaaaaaccagtacccggctggctggttcaggtccttcgtggttgcc
ctgtcggaagcaggttgtcaacatgctgcgagttatgtggagggtcgccctccaagcccc
tcatcggaggcagagaatgactactgcgtccgacttattcaagttctcctacccacactt
ttggaaatgaagactaatgatgtgtcccgtaggtgttttgaattagacattctcaaccag
gaggacctcgaagttatttcaggtaaaaccccaaaagaaggagctcgtgaactgctgcga
agggtggtaagatgtcctcctggctggttctccacattcctgcaggccttgcgagacacg
gagcacattcccctatacagggagctgactggaggaaaccccggggatgaggggaatgag
ccaggtgaggacggggagcctggcagcctggtctctgcagacggggctccaggggaagca
gccacccagggccaagcagcccaaaggcctggagcctcggaggatgagaccctggacagc
agcgacatatcagggatgagcatggatgagtccttagacactacagatctttaccaagaa
caggaagagaaaagtagtgacagcttggatgtctcactctcagacggcagcgacgccgca
agttctgctggaagccccaagaaagctgacatcatccttcgagattatcagatggaggtt
gcgcgacctgccttggaggggaaaaacataattgtgtgcctgccgacaggaagtggcaaa
acccgagttgcagtgtatattactaaacaacatctggacggcaggaggagcgaggggctg
ccagggaaagtggtggtcctggttaacaaggtgcccttggttgagcagcattactccacg
gagttctggaagtttctgaaacaccagtacaaagtggagaaagtcagtggagactcccag
ctcaaaatctccttcactcagatagtccagaagaacgatatcataatctgcactgcccag
atcctggagaactacttggagagggctaatgatggcgacgatgacgggattcagttatca
gatttgaccctcattgtaattgatgagtgtcaccacacacagaagggagctgtctacaac
aagatcatgatccgctacctgaaacagaagaagaagaacgcttccttgaagaagttagcg
aagaagactgttcccattcctcagatcctgggcctcaccgcctcacctggtgttggaggg
gccaagaaaatggcgaaagctgaggagcacattttacgaatctgtgcaaacctggatgct
tcagagatcttgactaagaatgagagtcttggactcaacaagaaggaaccacataagagg
attgctacggctgaagagaggaatgaggatccctttggggatgtaatcaagggcatcatg
aatgacatccatggccacggtgtgctgtctccctcctgcgacctgggcacccagaactac
gagcagtgggtggttctgatggagcaaaatgctgcaaaagaggagaaccagcaggtgcgt
gtttgcgcggagcacctccgcaggtacaatgaggcgttgcacctgagcaacaccatccgc
atgaaagacgccttcagcttcctgcacaagttctacaaagaggagaagaagaagaaaatg
gctccggaggaggacacgcccataaagataactgaaacggagatgttcctcttcgatctc
tttaaagaaaagaaggcacaactgcaggagttgaccaagcatccggagtatgagaataac
atcttgtctcagctgagaaccaccgttcttcaggagttcacgagcagaatggaagcgcga
gggatcatttttaccaaaacccgtcacagtgccatagctttaagccagtgggttcaggac
aacccaaagtttgccgaggtgggagtgaaagcatgctatgtgataggagcgggagaccag
agtgaagtcaaaccaatgacccttgcagagcaaagggatgcgttgaaaaagttccggaac
ggagaagtgaacttgctgatcgccaccaccgtggcggaggagggtctggacatagcagag
tgcaacttcgtcatccgatatgccctcgtgaccaatgagatagccatgatccaggctcgg
ggccgaggcagagcggaggacagcagctacatcctggtggaggagcagggctcaggagtg
gctgaacgggagcatgtcaacgagtaccgcgagagcatgatgagcaaggccatcgagaaa
gtgaagaagcttgatccagcggcgtatgagaaaaggattctagagtatcagctccaggct
attatggaggacagagtgaagaagaccaagaagaatcagaaagctatgatgatggagagt
ccatccaaagtgatgttcaactgtaaacgctgcagcaaaacagtctgctctggtgaagac
attcagatcattgaaagtatgcacagagtcaacgtttctgcacagtttggtgaacttttt
atcaaaagagaaaacacgtcccttcgggagaggatgctggactatgagaccaatctggtc
atagcttgcaaggactgtgggcaggagtggggttccatgatgctgttccgtgggattgac
tgtccctgtcttcacatcaaacacttcgtagtgaccttcgatggaaggaacaagacctac
accaagtggagtgaactcaccgtcaagttccctgcctttgattacgctgagcatgccagt
ctagtggctcacagctctgaggaggatgaagacagcatgtag
DBGET
integrated database retrieval system
