Osmerus eperlanus (European smelt): 134017900
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Entry
134017900 CDS
T10927
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134017900 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oep03041
]
134017900 (prpf40a)
Spliceosome [BR:
oep03041
]
Complex A
U1 snRNP components
U1 related factors
134017900 (prpf40a)
Complex B
134017900 (prpf40a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
CEP164_N
Motif
Other DBs
NCBI-GeneID:
134017900
NCBI-ProteinID:
XP_062314011
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All DBs
Position
3:23930849..23950326
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AA seq
891 aa
AA seq
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MSSADAKNGSSQAAPFPGVPPSGMPPSFMGPPGMPPHFPPMGMPPMGQRPPSMSPMPPGM
MPPGMMPMGGPQMGQMPGMMPPMMAGMIMPPRMPAVAMQPTGPPGVDTATTTAGTVGTAN
GSPQDEQPKKKSLWTEHKSLDGKTYFYNTETKQSTWEKPDDLKSPAEQMLSKCPWKEYKS
DTGKPYFYNSQTKESRWTKPKDLEDLEAMIKAEENGTADVPAPGTVPTPVLQAHAAAAME
TMMEVESVAVSVALPVVEEHLTQGAVQGGEGSTEAPPASTESTAPTELPASTEGSKEDRP
EIQKKTYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKTIINDPRYSALPKLSEKKQAF
NAYKVQTEKEEKEEARIKYKESKETYQRFLENHDKMTSTTRYKKAEQMFGDQEVWSCVPE
RDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNP
TFAEDEELQNMDKEDALICFEEHIRALEKEEEDDKQKSLLRERRRQRKNRQSFQKFLDEL
HDHGQLHSMSAWMEMYPTISSDIRFSNMLGQPVYGVYSAGSTPLDLFKFYVEDLKARYHD
EKRIIKDILKDKGFLVEVNTGFEDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEARERE
REKEEARKMKRKEAAFKSMLKQATPPLEPEATWETVRERFLKESAFEDVTLESERKRIFK
DFMHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEEEEYHNNNKKKKRSQSKSL
SERSSSGESERSYKKSKKHKKKGKKRRHKSASPESEGEKKGRDRDSKREQEKEKEKENDK
SRGKGRSESKQKSPKRKATKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagcagatgctaaaaatggctcgagccaagcagcaccttttcctggtgtccca
ccttcgggaatgcccccatcttttatgggaccaccaggaatgccacctcacttcccccca
atgggaatgccccccatgggtcagaggccgcccagcatgagccccatgcccccagggatg
atgcccccagggatgatgcccatgggtggaccccagatgggacagatgccaggtatgatg
ccccccatgatggctgggatgattatgccccctcgtatgcccgcggtggccatgcaacca
acaggaccgcctggggtggacactgccaccactacagcaggaacagtgggtacagctaat
ggctctccccaggacgagcagcccaagaagaagtccctgtggacagagcacaagtctctg
gatgggaaaacttatttctataacacagagaccaagcagtccacctgggagaaaccagac
gacctcaagtctcctgcagaacaaatgttgtcaaaatgtccgtggaaggagtacaagtct
gacacagggaaaccgtacttctacaactcccagaccaaggagtccagatggactaagccc
aaggatctggaggatctggaggccatgatcaaagccgaggagaatgggactgcagacgtc
cccgcccctggcaccgtccccacgcctgtcctgcaggctcacgccgccgccgccatggaa
actatgatggaggtggagagcgtggcggtgagcgtggccctgcccgtggtggaggagcac
ctgacccagggggccgttcaggggggcgagggcagcaccgaggcccccccagcttccaca
gagagcactgccccaacagagcttcctgccagcactgagggctccaaggaggatcgtcca
gagatccagaagaagacgtacaagtggaacaccaaggaggaggccaagcaggccttcaaa
gagctcctgaaggagaagggtgtctcgtctaatgcatcatgggagcaggccatgaaaacc
atcatcaacgacccccgctacagtgccctgcccaagctgagtgagaagaagcaggccttc
aacgcctacaaggtccagacagagaaggaggagaaggaagaggccaggatcaagtacaag
gagtccaaggaaacctaccagaggttcttggagaaccatgacaagatgacctccaccacc
agatacaagaaagcggagcagatgtttggggatcaggaggtgtggagttgtgttccagag
agggacagactggagatctatgaagacgtgctgttctacctggctaagaaggagaaggaa
caagccaagcagctgcggaagagaaactgggaggccctgaagaacatcctggacaacatg
gccaacgtgacgtaccgtaccacctggtctgaggcacagcagtacctactggacaacccc
accttcgcagaggacgaggagctacagaacatggacaaggaggatgctctgatctgtttt
gaggagcatatccgagctctggagaaggaggaggaggatgacaagcagaagtctctgctg
agagagaggagacgtcagcgcaagaaccgccagtctttccagaagtttctagatgagctc
catgaccacggtcagctgcactccatgtctgcctggatggagatgtaccccaccatcagc
tccgacatccgcttctctaacatgctgggacagcctgtttatggtgtctattctgcaggc
tccacccctctggacctgttcaagttctacgtggaggacctgaaggcccgttaccatgac
gagaagaggatcatcaaggacattctcaaggacaagggcttcctggtggaggtgaatact
ggatttgaggactttggttctgttataagctcagacaagagagccacgacgctggatgct
ggcaatatcaagctggccttcaacagtctgctggaaaaagcggaggcgcgggagcgggag
cgggagaaggaggaggccaggaagatgaagaggaaggaggcagcgttcaagagcatgctg
aagcaggccacgccccctcttgagccagaggccacctgggagacggtccgagagagattc
ctcaaagagtcggccttcgaggacgtgactctggagtcagagaggaagaggatatttaaa
gacttcatgcacgtcttggagcatgagtgccagcaccatcactccaagaccaagaagcat
tcaaagaagtccaagaaacaccacaggaagagatcccgttctcgctcgggttccgagtct
gaggaggaggagtaccacaacaacaacaagaagaagaaacgctcccagtccaagtccctg
tccgagcgctcctccagcggggagtctgagagaagttataagaagtccaagaagcacaag
aagaagggaaagaagaggcgacacaagtcggcttcccctgagtctgagggagagaagaag
gggagagacagggacagcaagcgggagcaggagaaggagaaggagaaggagaatgacaag
tccagagggaaaggccgctccgagtccaaacagaagtctcccaaaaggaaagctaccaag
gaggagggcggctgggacacgtcaggcagtgagctgagcgagggagagctagagaagagg
aggagaacactgctggagcagctggacgcaccgtga
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