Osmerus eperlanus (European smelt): 134018855
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Entry
134018855 CDS
T10927
Name
(RefSeq) embryonic polyadenylate-binding protein-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03015
mRNA surveillance pathway
oep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134018855
09123 Folding, sorting and degradation
03018 RNA degradation
134018855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oep03019
]
134018855
03041 Spliceosome [BR:
oep03041
]
134018855
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
134018855
mRNA cycle factors
Stress granule specific factors
134018855
Spliceosome [BR:
oep03041
]
Complex C
Other components
Complex C specific factors
134018855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_occluded
RBD_RDR6
Motif
Other DBs
NCBI-GeneID:
134018855
NCBI-ProteinID:
XP_062315144
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All DBs
Position
4:complement(12596312..12606562)
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AA seq
658 aa
AA seq
DB search
MNSSGQQAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINF
QQPADAECALDTMNYEVLKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTF
SAFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIDTMNGMLLNDRKVLETGSELESGI
GDPKACVLGKNCQLSPFSFVGHFKSRKEREVEFGAKAMRFTNVYIKNFSEDYTDDRLKGV
FSQFGRTMSVRVMVDERGRSRGFGFVNYENHEDAQMAVEEMNGKELNGKVLYVGRAQKRL
ERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDGINDEKLRKEFAPYGTITSAKVMTDAG
HSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERKAILTNKYMQRLATVR
TMPGPVIDSYQQPGYYMSAVPQPPSRSFYNPNQMGTIRTSPRWTTQPPRPQGPYSAQFVR
TAVPRRASTPISGVRQASTQAPRIMNYTQRMANIGTQTAGGRAGLSGGMVRGTQYKYSSG
VRNLQQVITVPTPITMQQVMPYPVMEQAVHVRGQEPLTASMLASAPLMEQKQLLGERLYP
LIHALHPKLAGKITGMLLEIDNSELLHMLESPESLNSKVEEAVAVLQAHQAKEHSPKK
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagtgggcaacaagcataccccctggcctccctgtacgtaggggacctgcac
cctgatgtgacagaggccatgctctatcagaagttctctcctgctggaccaattatgtct
attcgtgtgtgtcgtgacatcatcacccgaagatctcttggatatgcatatatcaacttc
cagcagccagctgatgcggagtgtgctttggatacaatgaactatgaggtcctcaagggt
cgacctatcaggataatgtggtctcagcgtgacccaggactaaggaagtctggcgtggga
aacattttcatcaagaacatggacgagtccattgacaacaaagccctttatgataccttt
tcagcctttgggaatatactgtcttgtaaggttgtgtgtgacgagaatggctccaagggc
tacggctttgttcactttgagacacaagaggcggcaaatcgtgccatcgatactatgaat
ggaatgctgctcaatgacagaaaagtcctagagacaggtagtgagttggaatctgggatt
ggtgacccaaaggcctgtgtcctggggaaaaattgtcagttgtccccatttagttttgtt
ggccactttaagtccagaaaagagcgtgaggtggagtttggggccaaagccatgaggttc
accaacgtttacatcaagaacttcagcgaggactacacagatgacagactgaagggggtc
ttctcacaatttggcaggaccatgagtgtacgggtgatggtggatgaaaggggacgctct
cggggatttggctttgtaaattacgaaaaccatgaggatgctcaaatggcagttgaggaa
atgaatgggaaagagctgaatggtaaagtgctgtatgttgggcgtgctcagaaaaggctt
gaacgccagggggagctcaagcgcaagtttgaacaaattaaacaggagcgcatccaacgc
tatcagggggttaatctgtatgtcaaaaacctggatgatggaataaacgatgagaaactc
cggaaggagtttgccccttatggtaccattactagcgcaaaggtgatgacggatgcggga
cacagcaaggggttcggttttgtgtgcttctcgtcccctgaggaggccacaaaagctgtg
actgaaatgaatgggcgcatcgttgccaccaagccactttatgttgctctagcccagcgc
aaagaggaacgcaaagccatcctcaccaacaagtacatgcagagacttgccacagtcagg
accatgcctggccctgtaatcgactcctaccagcagccagggtattacatgtctgctgtg
cctcagcctcccagtcgttctttctacaatcccaatcagatgggcaccataagaacgtcg
cctcgctggactacacagccacctagaccacagggtccctactctgcccagtttgtgagg
actgctgttccccggcgtgcctccacccccatcagtggtgtccgccaggcctccacccag
gcaccacgcatcatgaactacacacaaagaatggcaaatattggcacccagacagcgggt
ggtcgtgcaggcctgtcaggaggtatggtcagaggcacccagtacaagtactcctctggg
gtcaggaacctccagcaggtcatcactgtgccaacaccaataacaatgcaacaggttatg
ccctatcctgtgatggagcaggcagtgcatgtccggggccaggagcctctcacagcctcc
atgctggcttcagcccctctcatggagcagaaacagctgctgggtgagcgactgtaccct
ctaattcatgcccttcatccaaaattggctggaaaaataactggcatgttactggagatt
gacaactcagagttgttgcacatgctggagtcccctgagtccctgaattctaaggtggag
gaagctgtggctgtgctgcaggcccaccaggccaaggaacactctcctaagaagtaa
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