KEGG   Osmerus eperlanus (European smelt): 134018909
Entry
134018909         CDS       T10927                                 
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
  KO
K08131  collagen type IX alpha
Organism
oep  Osmerus eperlanus (European smelt)
Pathway
oep04510  Focal adhesion
oep04512  ECM-receptor interaction
oep04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:oep00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    134018909 (col9a3)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    134018909 (col9a3)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    134018909 (col9a3)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:oep00535]
    134018909 (col9a3)
Proteoglycans [BR:oep00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   134018909 (col9a3)
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 134018909
NCBI-ProteinID: XP_062315247
LinkDB
Position
4:13499006..13513488
AA seq 678 aa
MAMFSALGVLLLCQLLTSSSAQRPGPRGPNGLPGTPGPPGKDGTDGKTGPAGLPGKTGPK
GKAGIPGGSGSPGLPGLPGVDGLTGPDGPAGKDGPPGEMGDAGPSGPGGPPGRGRTGAPG
LPGANGLQGGVGPQGPVGPEGTSGDAGAPGLDGPPGLPGALPDGSGDLLCPAICPPGPSG
PPGMPGFKGHTGHKGDKGELGKDGEKGDSGPPGPPGIPGTVGLQGPRGLRGLQGPMGPVG
DRGLPGFRGKPGITGVIGKTGDAGENGPQGFNGPKGDIGKIGPKGGPGGSGPKGEPGIPG
RDGKDGTQGLDGEKGDAGRGGVPGEKGPNGLPGLQGRAGSKGSKGGVGDPGEMGEAGPSG
EPGIPGDIGIPGERGMAGPRGVVGGIGPVGNIGGQGVKGYQGVKGALGDPGLPGPTGIRG
GFGERGPVGASGPKGDMGVGGSDGLPGENGEPGPFGPVGQKGEGGKTGELGPKGVVGPQG
ELGARGAPGKPGLMGFQGEQGLPGIAGKNGVPGKLASEQHIRELCGSMIDDQIAQLAANL
RRPLSPGGVGRPGPAGRAGKPGGSGSIGHPGSRGPPGYRGLPGDLGDPGPRGDVGEQGDK
GPIGKAVDGPVGDQGHQGLPGVHGIVKDGRDGSPGDPGEPGESGRTGRTGHQGSPGICDT
SACQGASVAGKTSNPKNH
NT seq 2037 nt   +upstreamnt  +downstreamnt
atggctatgttctcagctcttggtgtgcttttgctatgccagcttttgacatcatcttca
gcacagagacctggcccacgaggacccaatgggctgccaggaaccccaggacctccggga
aaggatggcactgatggcaaaactggccctgctggacttcctgggaagactggacctaaa
gggaaagcaggtataccaggaggatctgggagcccaggcctgccaggccttccaggggtg
gacggattgactggtcctgatggcccagctgggaaggatggtcctccaggggagatgggg
gatgctggaccttccgggccaggtggacctcctggcagagggagaacaggagctccaggg
cttccaggagccaacgggctgcagggcggcgtggggccacaggggcctgtgggccctgag
ggtacttctggagatgctggtgctcctggccttgatggacccccaggtcttcctggtgct
ctccctgatggcagtggagatcttttgtgtcctgccatctgtccccctggtccctctggc
cctcctgggatgcctggctttaagggtcacacaggacacaaaggagacaagggagagctt
gggaaagatggagaaaagggtgattctgggccccctggtcctcctgggatcccaggcact
gtggggctgcagggtccacgtgggctgaggggactccagggtccgatggggccagtggga
gacaggggtttacctggtttccggggcaagcctggcattacaggtgttattggaaagaca
ggtgatgctggagagaatggaccacagggttttaatggaccgaagggagacattggcaaa
attggtccaaaaggaggtcctggtggatcaggacccaaaggggagcctggtattcctggc
agagatgggaaggatggcacccaaggattagatggagagaagggtgatgctggtaggggt
ggtgtgcctggcgaaaaaggacccaatgggcttcctggtctgcaaggaagggctggctct
aagggatctaaaggaggagttggagatccaggagaaatgggagaagcaggaccatctgga
gagccaggtattcctggcgacattggtatccctggagaaaggggtatggcaggacccaga
ggagtggttggtggcattggaccagtgggcaacattgggggccagggtgttaaaggttac
cagggggtgaagggtgcgctcggggaccctggccttccaggaccaacggggatccgagga
ggatttggtgaaaggggaccagttggtgcatcagggcctaagggagacatgggcgtggga
ggaagtgatggtctcccaggagagaacggagaacctggtccatttggtccagttggccaa
aagggagaggggggaaagactggtgagctgggacccaagggtgtagtggggcctcaagga
gaactcggggccagaggggccccaggaaaaccaggacttatgggcttccagggtgaacaa
ggtctacccggcattgcagggaaaaatggtgttcctggtaaacttgcaagtgaacagcac
atcagagaattgtgtggctcaatgattgatgatcagattgcacagttggctgccaacttg
aggaggcccctgtccccaggaggggttggtcgtcctgggcctgccggacgcgctgggaaa
ccaggtggttcaggatctattggacaccctggctctcgaggtcctccaggatacagaggg
ctgcctggagaccttggagatcctggtcccagaggtgatgttggtgaacagggagacaag
ggacccattggaaaggctgttgacgggcctgttggagaccaaggacaccaaggtctgcca
ggagtgcatggaatcgtcaaggatgggcgtgatggatcccctggagatccaggtgagcca
ggagagtctggccggacaggtaggaccggacaccagggatctcctggaatctgtgacact
tcagcctgtcaaggtgcctcagttgctggaaaaacctccaaccccaagaaccattaa

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