Osmerus eperlanus (European smelt): 134018930
Help
Entry
134018930 CDS
T10927
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04510
Focal adhesion
oep04512
ECM-receptor interaction
Brite
Glycosaminoglycan binding proteins [BR:
oep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134018930 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
134018930
NCBI-ProteinID:
XP_062315285
LinkDB
All DBs
Position
4:13775464..13795127
Genome browser
AA seq
1424 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSVVRCQQEDDQSIGAKGQKGEPGEIADVVGPKGPAGPMG
PSGEQGPRGEAGAKGDKGNIGPRGRDGEPGTPGNPGPPGPPGPPGPNGPPGLGGNFAAQM
AGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGAAGPMGPRG
PSGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKGEGG
AAGAKGEGGAPGENGAPGPMGPRGLPGERGRPGPSGSAGARGNDGLPGPAGPNGPVGPAG
APGFPGSPGAKGEAGPTGARGSEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKGSAG
ASGISGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPAGPLGAPG
PAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGALGDRGVPGVGGPKG
GTGDPGRTGEPGLPGARGLTGRPGDAGPQGKGGPSGAAGEDGRPGPPGPQGARGQPGVMG
FPGPKGANGEAGKAGEKGLVGRTGLRGLGGKDGETGAAGPPGPAGPAGERGEQGQPGPSG
FQGLPGPGGPPGESGKPGDQGVPGEGGAAGATGPRGERGFPGERGGAGPQGLQGPRGLPG
TPGTDGPKGAIGPSGGAGAQGPPGLQGMPGERGAGGISGAKGDRGDNGEKGPEGASGKDG
SRGLTGPIGPPGPAGPNGAKGETGASGPTGAGGARGAPGDRGETGPPGPAGFAGPPGSDG
QPGAKGEIGEGGQKGDAGAPGPQGPSGAPGPVGPTGVSGPKGARGAQGAAGATGFPGAAG
RVGSPGPNGNPGASGPAGPSGKDGPKGVRGDSGPTGRQGDAGLRGAAGAPGEKGDAGEDG
PPGPDGPSGPNGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAGGDRGPPGPVG
PPGLSGPAGEPGREGNAGADGPPGRDGSTGVKGERGNTGPAGAPGAPGSPGAPGPVGPLG
KQGDRGESGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQGLPG
PPGPAGDAGAAGPAGPSGAKGPPGPVGPAGKDGSNGQLGPVGPPGPRGRSGETGPAGPPG
NAGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVDSTLKSLN
NQIENLRSPDGTQKNPARTCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCNMETGETC
VYPSIANVPKKNWWSSKGKDGKHIWFGETMNGGFHFNYAQDGPAANAASIQLTFLRLLST
EASQTLTYHCRNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYGVLEDGCKKHTG
QWGKTVFEYKTQKTSRLPIVDIAPMDVGGADQEFGVDVGAVCFL
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactgttctgctacttgtagcatcccaggttgtttta
ctatccgttgtcagatgtcaacaagaagacgaccaatcaattggtgctaagggccagaaa
ggtgaaccaggcgagattgcagatgttgtaggaccaaaaggaccagcaggccccatgggc
ccctctggagagcagggaccacgtggagaggcaggtgctaagggtgataagggaaatatt
ggccccagaggaagagatggtgagcctggcaccccagggaaccccggaccccccggaccc
cctggcccccctggacccaatggcccccctggacttggcgggaactttgctgctcagatg
gcaggtggatttgatgagaaagctggaggtgctcagatgggagtgatgcaaggacctatg
ggccctatgggtccccgtggccccccaggcccctcaggagcccctggcccacaaggtttc
caaggaaaccccggtgagactggcgagcccggtgcagctggccccatgggaccccgtggc
ccatctggaccctctggcaaaccaggaagtgatggtgaggctggtaaacctggaaaggct
ggtgagcgtggacctgcagggcctcagggtgctcgtggattccctggaacccctggactt
cctggaattaaaggacacagaggtcaccctggcctggatggtgccaaaggagagggtggt
gctgcaggagccaagggggagggtggtgctcccggagagaacggagcccctggacctatg
ggaccacgtggtctgcctggtgagagaggtcgtcctggaccctctggatctgctggtgct
cgtggtaatgatggcttgcctggtcctgctggtcccaatgggcctgttggtcctgctgga
gcaccaggtttcccagggtctccaggtgccaagggagaggctggccccactggagcccgt
ggatctgagggcgctcagggaccccgtggagaagctggcaccccaggatctcctggacct
gcaggagcctctggcaaccctggtactgatggtatccctggagctaaaggatctgctggt
gcttctggtatttctggtgcccctggattcccaggcccacgtggcccacccggaccacag
ggagcaacaggacctcttgggcccaagggacagtcgggagaccctggtattcctgggttc
aaaggtgaagccggacccaagggggagcttggccctgccggtcccctcggagccccgggc
ccagctggtgaggagggcaagagaggagccagaggagagcctggtgctgctggaccactt
ggacctcctggcgagaggggagctcctggtaatcgtggtttcccaggtcaggatggtctt
gcaggtgctaagggtgctcttggtgaccgtggtgttcctggagtgggtgggcctaagggt
ggtactggagaccccggccgcacaggagagcctggtctgcctggagccagaggtctcact
ggtcgccctggagatgctggtcctcagggtaaaggtggtccatctggtgccgctggtgag
gatggtcgccctggacctcctggtcctcagggtgcccgtggccagcctggagtgatggga
ttccctggacctaagggagccaatggtgaggctggcaaagcaggagagaagggtcttgtt
ggtcgcactggtctgaggggtctgggtggaaaggatggtgagactggtgctgctgggcct
cccggtcctgctggacctgctggagagagaggagagcaaggacagcctggaccctctggc
ttccagggtctgcctggacctggtggacccccaggagagagtggcaagccaggtgaccag
ggtgttcctggagagggtggagctgctggtgccactggacctagaggtgagcgtggtttc
cctggcgagaggggtggagctggacctcagggtctgcagggacctcgtggacttcctgga
actcccggaactgatggacccaagggagccatcgggccatctggcggtgctggtgcccag
ggacccccaggcctccagggtatgccaggagagagaggagctggtggtatctctggagct
aagggagacagaggtgacaatggtgagaaaggacctgagggtgcttctggaaaggatggc
tctaggggtttgactggtccaattggtcctcctggtccagctggacctaatggcgctaag
ggagagactggagcttctggacctactggtgctggtggtgctcgtggtgctcctggtgac
cgtggtgagactggtcctccagggcctgctggcttcgctggacctcctggttcagatgga
cagcctggtgccaagggagagattggtgagggtggacagaagggtgacgctggtgcccct
ggccctcagggaccctctggggcccctggacctgtgggtcccactggtgtttctggacct
aaaggagcccgtggagctcagggagctgctggtgctactggtttccctggtgctgctgga
agagttggatctcctggtcccaatggtaaccctggtgcttctggccctgctggaccttct
ggtaaagatggtcctaagggagttcgtggagactcaggccccacaggaagacagggagat
gctgggctgcgtggagctgctggtgccccaggagagaagggagatgctggagaggatgga
ccccctggtcccgatggaccttcaggtcccaatggattggctggatctcgtggtattgtt
ggtctgcctgggcagcgtggagagaggggcttccctggccttcctggaccttctggcgag
cccggtaagcagggagctcctggtgctggcggggatcgtggaccccctggacctgttggg
ccccctggactgagtggacctgctggagagcctggtagagagggcaacgctggagcagat
ggaccccctggaagagatggatcaactggagtcaagggagagcgtggtaacactggtcct
gctggtgcccccggggcccctggttcccctggtgcccctggccccgtcggccctcttggc
aagcagggagacagaggagagtctggtgcccaaggacctgctggacccgctggaccagct
ggagccagaggaatggctggaccccaaggaccccgtggagacaagggagaggctggcgag
acaggagagaggggacagaagggtcaccgtgggttcactggcctgcagggtctgcctgga
cctcccggtcctgctggagatgctggtgctgctggacctgctgggcccagtggagccaag
ggaccccctggaccagtcggccctgctggaaaggatggatctaacggccagctgggacct
gttggacctcccggaccccgtggacgctctggagagactgggccagctggtcctcctggt
aacgctggaccccctgggcctcccgggccccctggccctggcatcgacatgtctgctttc
gctggcctgtctcagcctgagaagtcccctgatcccctgaggtacatgagggccgacgag
gcctccagctccctcaggcagcatgacgtggaggtggactccactctcaagtccctgaac
aaccagatcgagaacctgcgcagcccagacggtacccagaagaaccccgcccgcacctgc
agagaccttaaactctgccaccctgagtggaagagcggtgactactgggtggatcccaac
attggcagcactgctgatgccatcaaggtcttctgtaacatggagactggcgagacctgc
gtctacccaagcatagccaacgtgcccaagaagaactggtggagcagcaagggcaaggac
ggcaagcacatctggttcggagagaccatgaacggaggattccacttcaactacgcacag
gacggccctgctgccaatgctgccagcatccagctgaccttcctgaggctgctgtccaca
gaggcctcccagaccctcacctaccactgccgcaacagcgtggcctacatggacgcctcc
acaggcaacctgaagaaggccgtgctgctgcagggctccaacgacgtggagatcagagcc
gagggcaacagccgcttcacctacggcgtgttggaggacggttgcaagaaacacacaggc
cagtggggcaagactgtcttcgagtacaaaacacagaagacctcccgtctgcccatcgtg
gacattgctcccatggacgtcggaggagcagaccaggagttcggagtggacgtaggcgca
gtctgcttcttgtaa
DBGET
integrated database retrieval system
