Osmerus eperlanus (European smelt): 134020710 Help Entry 134020710         CDS       T10927                                  Symbol spg11 Name (RefSeq) spatacsin isoform X1   KO K19026   spatacsin Organism oep  Osmerus eperlanus (European smelt) Brite DNA repair and recombination proteins [BR:oep03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      134020710 (spg11) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Spatacsin_C Motif Other DBs NCBI-GeneID:  134020710 NCBI-ProteinID:  XP_062316885 LinkDB All DBs Position 5:complement(956845..993769) Genome browser AA seq 2415 aa AA seqDB search MLNRSEPMDNGTLEVALIPESNLCRNVEDLGKAKMAQGSSLLCFLNRSGGLTIGDISVSE SSGKTLDGTYSDVAWEEVTAHGGSGSVHRLLAVGSEGDLKLYEVKAECAASNQPLTCTSK CTAEQIVQLVQEKDLSLPEVLSVKVLSFVDARCCLLLNSSTLVQLLWKWRGAGDPQALSC CPLRLPPGAPCTWTDSRLCRDTLFMLTCSGVIYVFSSVEGSQLASVDLAWCVPAWLCEGD TPPCLSAFSLLQVSPDLTTAVAVTRSNAAVAIDLNDYFRKHPDHLLGCLPQPCSPLRPGE SSDEDSLSSSAYSRSALGASFHTDRSWEARLTALYSRAKASSSPSPSPPQPARSSWFRAL PLTGGPQTAPSSRLSQSRVPSEGAGVQLCVPDGSVPALLSVSDFSAVLTLVSPGNSQTTV AFWDLQSQMVTYHRPSLPAAPVLCCGGEQLCLMLKASGLSLVLFCVSQEELLNRLMVFGS ASTVDSLCHLNTWERCPIPLHALQAGLKNHQLDTVEFFLKSKENLLCPTGLAPDQPSPVS SQSQLKNVQDLLPALELLLGSIRDTHTESQSRQFSEQLLSITLAFLNTQVRSILSRTQEP DEGLQKCVEILDGYISTLRSYMKTLPWPAGGDTCSPVTSPSPDPEEEDWSSLSTGEVVQH AVLTNQIPRAQAYLRSHSKPEQRIDELRMMGLQQAFSCLADRDLQLASTLLRNMGFNVKK KLHSICLYTDNQELRDFVVDELSKQRYLSEEEVQRVAFIKQIENLACVPVTRASQPVDRE RVLQMAQTDPASKRLLEQRVLEASSQSDARLFMSLRLDWVTHWDPDTQRTISLSHLQDSA VSACDSVVLWRYLTSHHDQARVTCWIQNLGSQNGDPASAPQWPALPPDVVNDHTLCSSHM RDHILHMLARRGLFVQAEMADFEQLLWRLGQAGGVMQAAHPLPHYRSALGLDFHTRFIHL CLDGCLRCLLYTYLDHYRLTPRNCPVLADKSLYESHPWFEMLVKIQEITRDLLEPGRVFH ASLTSAQVLLPGSQASVSSMLLEGHSLLALATIMFAPGGIDQVVSLGSGGSTWRVDPQLL KMALSLYPKLRAALFPPSGPSTLSSDTSIYHLMQSLHPLDPSRLFSWQSANTLSSTGETS SELPHFSSPHLVSQFAMIEKLDFLYYLRHGRPSFAYGTFLVQNLTTFTDVKSHLQCAAQQ AYCLAMQLFSSAPVVAACVCFCELLGVCSLRMRVDRKALSLVLAHWSQNSDETTTASHRD SLAVKGSRLVEAERATAEELLALLEAAVKDIIERKGINRWSHEAGKEWALPVQFCQLHTL PLSSVYPLDCAASGHWLHFLLFVQLHSYPPQQVRSLAGQFGPALQAHLTLSLQDLQWRAD QALAGGLGGGVSLPSHEAPEAPRDLLLVLLRSQEEPCPWRHLLGEAVGLRCPTLGVLAAC HQDADLLQCLCVWVLTSVDEVVSEEATAHLHESPRHHEWNLHDLSIIWRALLRKRLVSPL IRGFQLFQRDSPLIHVLLMYELCCDYKNYPEAQKKLLEFQKYLINRRGGGAEGGGAAGLP LAWEESQASALLLILMQQCSTQYELRRLLRLLADMDRLLKSNGPDFKKLSLLSQVLKDTC VSVPPALLESYSTPALQEASKGLLEQLQASALFSQARQVAELAGLPIDSLVINELVHDLI SQKAKRQWERRETRVAFWRKCNNQFRTNRTSPEAASEFFLSQAGGPEPRHGSVEEVELVC VQERCLLLGLAGHWLSLLSPAPLERLEDLEKQLWTSLVRQQVLQTAMETESMFSFPAPAV PPEENSYEALVKEFSFSKMAVLNQPQYLGLEGLEGLEGPAGGREASGPLGGERERSALSW LVGQLLDEGCVHEAGRVCRYFSFCPRDVWLVLRCRGLASGELQAGLTGMLPQEGSPADRL PSASSFTSLSSFVMVPSPEDQVLSQLQRLVDQCHHGKNYCKQVLSLYELSKELRCLYSEI SDEEPLAVLQKVLLSRQPDRYQKAQAFISVQGLQPDTLAVMLASAVLQGLLASMQDGDAA EKQMFRPAEGREAFLQLAKLCGDASLLGLRLLELIPSVPLRELACMVELLILSHDCFSLT CNMEGIVRVLQAARHLSHTHLAHSDSYSLLVRLLTGIGRYNDMTYIFDLLNQNHRFEMLL RKNVESQNAGLKTALLDYLRRCLPGDSEKHNMVALCFSMRREIGENHEGAARTQLKLIQS QEGAQPWAVTPELKSSLLKVLTLLKDAAESYSKDSCVRQAARCVRMAKLLALQLHFLNQG QEQRVINLQPSDLLKTIIALPRCYQGFVVAEAYDYSPDMAELLYQKVVVSGDFSYLEEFS RLRPLPPSLFEDISKKMIHNKPPSSAGQNMKRLLQRCDDVYTYYKLAYEHKFFDVANMLL QDSKTSSYLNDRLGS NT seq 7248 nt NT seq  +upstreamnt  +downstreamnt atgttgaacaggtctgaacctatggataatggcacattggaggttgctctcatccctgaa agtaacctctgcagaaatgttgaggatttggggaaagccaaaatggcccagggcagctct ctgctgtgtttcctaaaccgatccggcgggctaaccatcggcgatatctctgtctctgag tcgtcaggaaaaactcttgatggaacatactcagatgtggcctgggaggaggtgacggct cacggtgggtcaggtagcgtccacagactcctcgccgttgggtcagagggtgacctgaag ctgtatgaggtcaaagcggagtgtgcagcttctaaccagccgctaacatgtacctctaaa tgcacagcagaacagattgtgcagctggtccaggagaaggatcttagtttgcctgaggtg ctgtctgtgaaggtgctgtctttcgtggacgccaggtgctgcctcctgctgaactccagc acgctggtgcagctgctgtggaagtggcggggcgctggagatcctcaggccctgtcctgc tgtcccctccgcctcccccctggagccccctgcacctggacggactcccggctctgcaga gacactctcttcatgctaacctgcagtggagtcatatatgtgttcagcagtgtagaaggt agtcagctggccagcgttgacctggcgtggtgtgtccctgcctggctgtgtgagggtgac acgcccccctgcctctcagccttctccctgctgcaggtctctcctgacctcactacggcc gtggcggtcacccgctccaacgccgccgtcgccatcgacctcaacgactacttcaggaag cacccagaccacctgctgggctgcctgccccagccctgctcccctctccgccctggggag tccagcgacgaggacagcctctccagttccgcctacagccgttctgctctgggagccagc ttccacacagaccggtcctgggaggctcgtttgacagccctgtacagccgggccaaggcc tcctcctccccctccccctcccctccccagccagccaggagctcctggttcagagcgctg cccctcacagggggcccccagaccgctccctcctccaggctctcccagagcagggtcccc tcagagggggcgggggtccagctgtgtgtccctgacggctctgtcccagctctgctctcc gtctcagacttctctgctgtgctgacgctcgtttccccgggcaacagtcagacgacagtg gccttctgggatttgcagtcccagatggtgacgtaccacaggccgtccctgcccgccgct cctgtgctgtgctgtggaggggagcagctctgtctgatgctgaaggcgtcgggcctgtcc ctggtgctattctgtgtgtctcaggaggagctgttaaacagactgatggtgtttggcagc gcaagcactgtggactccctgtgtcacctgaacacctgggagcgctgtcctatccccctc cacgccctgcaggctgggctgaagaatcaccagctggacacggtggagttcttcctgaaa agcaaagagaaccttctctgtcccactggcctcgctcctgatcagccctctcctgtttcc tcccagagccagctgaagaatgttcaggacctgctcccagctctggagctgctgctgggc tccatcagggatacccacactgagagccagagccggcagttctcagagcagctgctcagc atcaccttggccttcctcaacactcaagtcaggagcatcctctccagaacccaggagcca gacgagggcctgcagaagtgtgtggagatcttggatggttacatcagcaccctgcggagc tacatgaagacactcccctggccagcagggggagacacctgctctcctgtcacatcaccc tcacctgaccctgaggaggaagactggagctccctgtccacaggggaggtggtccagcac gcggtgctgaccaaccagatccctcgggcccaggcctacctgcggagccacagcaaacca gagcagcggatagacgagctaaggatgatgggtctgcagcaggccttcagctgcctggct gaccgagacctgcagctagccagcaccctgctcaggaacatgggtttcaacgtgaagaag aaactccacagcatctgtctctacactgacaaccaggagctgagagactttgtggtggat gagctgtcgaagcagaggtacttgtcagaggaagaggttcaaagagttgcgttcatcaaa cagattgagaatttggcttgcgtgcctgttactcgagcctcccagcctgtggacagagaa agggttctccagatggcccagacagacccggcctctaagaggctgctagagcagcgagtg ctagaggccagctcccagtcggacgccaggctgtttatgtccctccgcctggactgggtg acacactgggatccagacactcagaggaccatctctctgtctcacttacaggactcagca gtgagtgcctgtgactccgtggtgctttggcggtacctgacatcccatcacgaccaggcc agggtgacctgctggatccagaacctgggctcccagaacggggaccccgccagcgccccc cagtggccggcactgcccccagacgtcgtcaatgaccacaccctgtgcagctcccacatg agggaccacatcctccacatgctggccaggagagggctgtttgtccaggctgagatggct gactttgagcagctgctgtggaggctgggccaggccgggggcgtgatgcaggccgcccac cccctcccccactaccgctcagcgctgggcctcgacttccacacacgtttcatccacctc tgcctggacggctgcctgcgctgcctgctctacacatacctggaccactacaggctaacc ccgaggaattgccctgtgctggcagataagagtttatacgaaagccacccgtggtttgaa atgttggtgaaaattcaggagattacaagagacctcttggagccgggccgtgtgttccat gccagcctgaccagtgcccaggtgctgctcccaggcagccaggcctccgtcagcagcatg ctcctggagggacacagcctgctggccctggccaccatcatgttcgcccccgggggcata gaccaggtggtgagtctgggatcagggggctccacgtggagggtggacccccagctgctg aagatggccttgagcctctaccccaaactcagagctgctctcttcccccccagtggcccc tccaccctatcgtccgacacctccatctaccacctcatgcagtcgctgcatcctttggat ccttccagattgttttcctggcagtccgccaacacgctcagttctactggagaaacttca tcagagttgccacatttctccagcccacaccttgttagccagtttgccatgattgagaag ctggacttcctgtattacctccgtcatggacgaccttcgttcgcctacggaacgtttctt gtccagaatttaaccaccttcaccgacgtgaagtcacacctgcagtgtgcagctcagcag gcatactgcctggccatgcagctgttcagcagtgcgcccgtggtggcagcatgtgtttgt ttctgtgagctcctgggggtgtgcagcctcaggatgagggtggacaggaaggcccttagt ctggtcctcgctcactggagccagaacagcgacgagacaacgacagcttctcacagagac tctctggctgttaaaggcagcaggcttgtggaggctgagagggcgacagcagaggagctg cttgctctgttggaggctgctgtgaaggacataattgaaaggaagggaattaacaggtgg tcgcacgaggcggggaaggagtgggctctgccggtgcagttctgccagctgcacaccctc cctctcagctctgtctaccctctggactgtgccgccagcggacactggcttcatttcctg ctctttgtccagctacacagctacccacctcaacaggtgaggtcactcgctggccagttt ggccccgccctgcaggcccacctgaccctctctctccaggacctgcagtggagggcagac caggccctggccgggggcctgggcggtggggtgagcctgcccagccacgaggccccggag gcccccagggacctgctcctggtgctgctgcggagccaggaggagccctgcccctggagg cacctgctgggggaggctgtggggctgcgctgccccacgctgggcgtgctggctgcctgc caccaggatgcggacctcctccagtgcctgtgtgtgtgggtcctgacctctgtggatgaa gtcgtctccgaggaggccaccgcccacctgcatgagagcccccgacaccacgagtggaac ctccatgacctgtccatcatctggagggccctgctcaggaagcgcctggtcagccctctg atacgaggcttccagctcttccagcgggactcccccctgatccacgtgctgctgatgtat gagctgtgctgcgactacaaaaactacccagaggcccagaagaagctcctggagttccag aagtatttgatcaatcggcggggcggcggggcggagggcggcggggcggcggggctgccc ctggcgtgggaggagagccaggcctcggccctcctgctcatcctcatgcagcagtgctcc acgcagtacgagctgcgcagactgctgcggctgctggcggacatggaccggctgctgaag tctaacggtccagacttcaagaagctcagtctgctgtctcaggtcctgaaggacacgtgt gtgagtgttccccccgccctgctggagagctactccactcccgccctgcaggaggcgagc aagggcttgctggagcagctgcaggccagtgctctgttcagccaggcgcgccaggtcgca gagctggctggcctgcccattgacagcctggtcattaacgagttagtccacgacctcatc tcccagaaggccaagcgtcagtgggagaggagggaaacacgggtggccttctggaggaaa tgcaacaatcagttcaggactaaccgcaccagtcccgaggctgcctcggagttcttcctg tcccaggctggaggtccagagccccgacatggctccgtggaggaggtggagctggtctgt gtccaggagaggtgcctcctcctgggcctggctggccactggctgtccctgctcagccca gctcccctggagcgcctggaggacctggagaagcagctctggaccagccttgtccggcag caggttctgcagactgccatggagacagagagcatgttctcctttcctgctcctgccgtt cccccggaggagaactcctacgaggccctggtgaaggagttctccttctccaagatggcg gtgctgaaccagccccagtacctgggtctggaggggctggagggtctggaggggccggcg ggcggcagggaggcttcagggccgctggggggtgagcgggagcggagcgcgctctcctgg ctggtggggcagctgctggatgagggctgcgtccacgaggcgggacgcgtgtgtcgctat ttctccttctgtccccgggatgtttggctggtgctgcgctgccgcggcctggcgtctgga gagctgcaggccggcctgacgggcatgctcccccaggagggctcgcctgccgacaggctg cccagcgcctccagcttcaccagcttgtcctccttcgtgatggttccctccccagaggac caggtgctgagtcagctgcagcggctggtggaccagtgtcatcacggcaagaactactgc aagcaggtcctcagcctgtacgagctctccaaggagctgcggtgcttgtacagtgagatc tcagacgaagagcccctggccgtgctgcagaaggtgctgctgtcccggcagcctgaccgc taccagaaggctcaggccttcatcagcgtgcagggcctgcagccagacaccctggccgtc atgctggcttccgccgtgctgcagggcctgctggcctccatgcaggacggagacgcagcg gagaagcagatgttcaggccagcggagggcagggaggccttcctgcagctggccaagctg tgtggagacgccagcctgctggggctccgcctactggagctcatcccctctgtgcccctg agagagctggcctgcatggtggagctgctgattctgagccacgactgcttcagcctgacg tgcaacatggagggcatcgtcagggtgctgcaggccgcacgccacctgagccacacacac ctggcgcacagcgacagttacagcctgctggtgcgtctccttacaggcatcggcaggtac aatgacatgacctacatcttcgacctgctcaaccagaaccaccgctttgagatgctgctc aggaagaacgtggagtctcagaatgcgggtctgaagactgccctgctggactacctgagg cgctgcctgccaggagacagtgagaagcacaacatggtggccctgtgcttcagcatgagg agggagatcggggagaaccacgagggggccgctcgtacgcagctcaaactcatccagtcc caggagggggcccagccctgggcggtgaccccagaactgaagagcagcctgctgaaggtt ctgaccctgctaaaggacgcagcagagagctactcaaaggactcgtgtgtgcgccaggca gcccgctgtgtgaggatggccaagctgctggcgctgcagctccacttcctgaaccagggg caggagcagcgagtcatcaacctgcagccctcagacctcctcaagaccatcattgccctg ccgcgctgctaccagggcttcgtggtggcggaggcgtatgactacagcccagacatggct gagctgctgtaccagaaggtggtcgtcagcggagacttctcctacctggaagagttcagc aggctccgccccctgccccccagcctgtttgaggacatctctaagaaaatgatccacaac aaaccgcccagcagtgctgggcagaacatgaagagactgctgcagcgctgtgatgatgtg tacacatactataaactggcctacgaacacaagttcttcgatgtggccaacatgttactg caggactcaaaaacaagcagttatctcaacgacagacttgggagctga

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